ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50e02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482956.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1218 Score = 200 bits (101), Expect = 3e-48 Identities = 224/265 (84%) Strand = Plus / Plus Query: 99 tggtgaccatcctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcc 158 |||| ||| |||||||| |||||||||||||||| ||||| ||||||||||||| | ||| Sbjct: 59 tggtcaccgtcctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcc 118 Query: 159 tcgctttccttgaaaaggagctccagaaattggacgggccggatgctaggatcgcggact 218 |||| |||||||| || |||||||| ||| |||| || ||||||||||||||||| |||| Sbjct: 119 tcgccttccttgagaaagagctccaaaaactggatggtccggatgctaggatcgctgact 178 Query: 219 acttcgatgtcgtcgccggcacgagcaccgggggcctcttgacggtgatgctcacggcgc 278 ||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||| || | Sbjct: 179 acttcgacgtcgtcgccggcacgagcaccggtggcctcctgacggcgatgctcactgctc 238 Query: 279 cggacaaggatggccggccgctgttcgacggcaaggatctggccaagttctacatcgacg 338 | || || | |||||| ||||||| || | | || ||||||| ||||||||||| Sbjct: 239 caaacgagaacaaccggccactgttcgccgccgacgaattggccaaattctacatcgaac 298 Query: 339 agtcgcccaaaatcttcccacagaa 363 | ||||||| |||||||||||||| Sbjct: 299 actcgcccagcatcttcccacagaa 323
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Minus Query: 183 agaaattggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacga 242 ||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 23541061 agaaactggatggtccggatgctaggatcgctgactacttcgacgtcgtcgccggcacga 23541002 Query: 243 gcaccgggggcctcttgacggtgatgctcacggcgccggacaaggatggccggccgctgt 302 ||||||| |||||| |||||| ||||||||| || || || || | |||||| |||| Sbjct: 23541001 gcaccggtggcctcctgacggcgatgctcactgctccaaacgagaacaaccggccactgt 23540942 Query: 303 tcgacggcaaggatctggccaagttctacatcgacgagtcgcccaaaatcttcccacaga 362 ||| || | | || ||||||| ||||||||||| | ||||||| ||||||||||||| Sbjct: 23540941 tcgccgccgacgaattggccaaattctacatcgaacactcgcccagcatcttcccacaga 23540882 Query: 363 a 363 | Sbjct: 23540881 a 23540881 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 99 tggtgaccatcctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcc 158 |||| ||| |||||||| |||||||||||||||| ||||| ||||||||||||| | ||| Sbjct: 23541240 tggtcaccgtcctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcc 23541181 Query: 159 tcgctttccttgaaaaggagctcca 183 |||| |||||||| || |||||||| Sbjct: 23541180 tcgccttccttgagaaagagctcca 23541156 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| | | |||| || ||||| Sbjct: 17656550 ctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgttcctg 17656609 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||| | |||||||||||| || ||| | |||||||||||||| ||| Sbjct: 17656610 gaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcgacgtc 17656669 Query: 230 gtcgccggcacgagcaccgggggcctcttgacggtgatgctcacggcgccggacaaggat 289 ||||||| |||||||| || || || |||||| |||||| ||||||| | | || Sbjct: 17656670 atcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcgccgac 17656729 Query: 290 ggccggccgctgttcgacggcaagga 315 ||||||||||| |||| || |||||| Sbjct: 17656730 ggccggccgctcttcgccgccaagga 17656755 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Minus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| || | ||||||| ||||| Sbjct: 23487018 ctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcgcgttcctg 23486959 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || | || ||| | ||||||| || || ||| || |||| |||||||||| || Sbjct: 23486958 gaggagaaactgcaggagctggacggccccgaggctcggctcgccaactacttcgacgtg 23486899 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 23486898 atcgccgggacgagcaccgg 23486879 Score = 48.1 bits (24), Expect = 0.023 Identities = 111/140 (79%) Strand = Plus / Minus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| |||||||||||||||| | || |||||||||| || | ||||||| ||| Sbjct: 23497729 ctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcgccagcctc 23497670 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||||| | ||||| | || || |||||||| ||||||||||| || Sbjct: 23497669 gaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactacttcgacgta 23497610 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 23497609 atcgccgggacgagcaccgg 23497590 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 ttgaaaaggagctccagaaattgga 192 ||||||||||| ||||||||||||| Sbjct: 6843601 ttgaaaaggaggtccagaaattgga 6843577 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ttgaaaaggagctccagaaattgga 192 ||||||||||| ||||||||||||| Sbjct: 6613585 ttgaaaaggaggtccagaaattgga 6613609
>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1666_A04 Length = 90097 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Minus Query: 183 agaaattggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacga 242 ||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct: 20836 agaaactggatggtccggatgctaggatcgctgactacttcgacgtcgtcgccggcacga 20777 Query: 243 gcaccgggggcctcttgacggtgatgctcacggcgccggacaaggatggccggccgctgt 302 ||||||| |||||| |||||| ||||||||| || || || || | |||||| |||| Sbjct: 20776 gcaccggtggcctcctgacggcgatgctcactgctccaaacgagaacaaccggccactgt 20717 Query: 303 tcgacggcaaggatctggccaagttctacatcgacgagtcgcccaaaatcttcccacaga 362 ||| || | | || ||||||| ||||||||||| | ||||||| ||||||||||||| Sbjct: 20716 tcgccgccgacgaattggccaaattctacatcgaacactcgcccagcatcttcccacaga 20657 Query: 363 a 363 | Sbjct: 20656 a 20656 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 99 tggtgaccatcctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcc 158 |||| ||| |||||||| |||||||||||||||| ||||| ||||||||||||| | ||| Sbjct: 21015 tggtcaccgtcctgagcatcgacggcggcggcgtcagagggatcatcccggccaccatcc 20956 Query: 159 tcgctttccttgaaaaggagctcca 183 |||| |||||||| || |||||||| Sbjct: 20955 tcgccttccttgagaaagagctcca 20931
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 15649 tggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccg 15708 Query: 249 ggg 251 ||| Sbjct: 15709 ggg 15711 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || |||||||||||||||||||| || ||||||| |||||||||| Sbjct: 7322 tggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacgagcaccg 7381 Query: 249 ggg 251 ||| Sbjct: 7382 ggg 7384
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 22999646 tggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccg 22999705 Query: 249 ggg 251 ||| Sbjct: 22999706 ggg 22999708 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || |||||||||||||||||||| || ||||||| |||||||||| Sbjct: 22991319 tggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacgagcaccg 22991378 Query: 249 ggg 251 ||| Sbjct: 22991379 ggg 22991381
>dbj|AK109768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A03, full insert sequence Length = 1931 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 1618 tggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccg 1677 Query: 249 ggg 251 ||| Sbjct: 1678 ggg 1680
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 85.7 bits (43), Expect = 1e-13 Identities = 58/63 (92%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| Sbjct: 23309556 tggacgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccg 23309615 Query: 249 ggg 251 ||| Sbjct: 23309616 ggg 23309618 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || |||||||||||||||||||| || ||||||| |||||||||| Sbjct: 23301229 tggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacgagcaccg 23301288 Query: 249 ggg 251 ||| Sbjct: 23301289 ggg 23301291
>dbj|AK067827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120O20, full insert sequence Length = 2434 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 193 cgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccgggg 251 ||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 237 cgggccggaggcgaggatcgcggactacttcgatgtgatcgccgggacgagcaccgggg 295
>dbj|AK058531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-A08, full insert sequence Length = 1618 Score = 77.8 bits (39), Expect = 3e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || |||||||||||||||||||| || ||||||| |||||||||| Sbjct: 375 tggacgggccggaggcgaggatcgcggactacttcgacgtgatcgccgggacgagcaccg 434 Query: 249 ggg 251 ||| Sbjct: 435 ggg 437
>ref|XM_482084.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1329 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| | | |||| || ||||| Sbjct: 175 ctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgttcctg 234 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||| | |||||||||||| || ||| | |||||||||||||| ||| Sbjct: 235 gaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcgacgtc 294 Query: 230 gtcgccggcacgagcaccgggggcctcttgacggtgatgctcacggcgccggacaaggat 289 ||||||| |||||||| || || || |||||| |||||| ||||||| | | || Sbjct: 295 atcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcgccgac 354 Query: 290 ggccggccgctgttcgacggcaagga 315 ||||||||||| |||| || |||||| Sbjct: 355 ggccggccgctcttcgccgccaagga 380
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| | | |||| || ||||| Sbjct: 133200 ctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgttcctg 133259 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||| | |||||||||||| || ||| | |||||||||||||| ||| Sbjct: 133260 gaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcgacgtc 133319 Query: 230 gtcgccggcacgagcaccgggggcctcttgacggtgatgctcacggcgccggacaaggat 289 ||||||| |||||||| || || || |||||| |||||| ||||||| | | || Sbjct: 133320 atcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcgccgac 133379 Query: 290 ggccggccgctgttcgacggcaagga 315 ||||||||||| |||| || |||||| Sbjct: 133380 ggccggccgctcttcgccgccaagga 133405
>dbj|AP003962.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_C03 Length = 118339 Score = 67.9 bits (34), Expect = 3e-08 Identities = 163/206 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| | | |||| || ||||| Sbjct: 41939 ctgagcatcgacggcggcggcgtgcgcgggatcatcccggggaccatcctggcgttcctg 41998 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||| | |||||||||||| || ||| | |||||||||||||| ||| Sbjct: 41999 gaggagaagctgcaggagctggacgggccggcggcgagggtggcggactacttcgacgtc 42058 Query: 230 gtcgccggcacgagcaccgggggcctcttgacggtgatgctcacggcgccggacaaggat 289 ||||||| |||||||| || || || |||||| |||||| ||||||| | | || Sbjct: 42059 atcgccgggacgagcacgggcgggctggtgacggccatgctcgcggcgcccggcgccgac 42118 Query: 290 ggccggccgctgttcgacggcaagga 315 ||||||||||| |||| || |||||| Sbjct: 42119 ggccggccgctcttcgccgccaagga 42144
>gb|AY105282.1| Zea mays PCO126203 mRNA sequence Length = 768 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||| ||||| ||| ||||||| |||||||||||||| | ||||| |||||||||| Sbjct: 266 tggacggcccggacgctcggatcgccgactacttcgatgtgattgccgggacgagcaccg 325 Query: 249 g 249 | Sbjct: 326 g 326
>ref|XM_482940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1629 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| || | ||||||| ||||| Sbjct: 274 ctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcgcgttcctg 333 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || | || ||| | ||||||| || || ||| || |||| |||||||||| || Sbjct: 334 gaggagaaactgcaggagctggacggccccgaggctcggctcgccaactacttcgacgtg 393 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 394 atcgccgggacgagcaccgg 413
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Minus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| || | ||||||| ||||| Sbjct: 78433 ctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcgcgttcctg 78374 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || | || ||| | ||||||| || || ||| || |||| |||||||||| || Sbjct: 78373 gaggagaaactgcaggagctggacggccccgaggctcggctcgccaactacttcgacgtg 78314 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 78313 atcgccgggacgagcaccgg 78294 Score = 48.1 bits (24), Expect = 0.023 Identities = 111/140 (79%) Strand = Plus / Minus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| |||||||||||||||| | || |||||||||| || | ||||||| ||| Sbjct: 89144 ctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcgccagcctc 89085 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||||| | ||||| | || || |||||||| ||||||||||| || Sbjct: 89084 gaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactacttcgacgta 89025 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 89024 atcgccgggacgagcaccgg 89005
>dbj|AK101432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038K22, full insert sequence Length = 1629 Score = 56.0 bits (28), Expect = 1e-04 Identities = 112/140 (80%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| ||||||||||||||||| | || |||||||||| || | ||||||| ||||| Sbjct: 274 ctgagcatcgacggcggcggcgtgcgcggcatcatcccgggcaccatcctcgcgttcctg 333 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || | || ||| | ||||||| || || ||| || |||| |||||||||| || Sbjct: 334 gaggagaaactgcaggagctggacggccccgaggctcggctcgccaactacttcgacgtg 393 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 394 atcgccgggacgagcaccgg 413
>gb|AF061282.1| Sorghum bicolor 22 kDa kafirin cluster Length = 162249 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||||||||| || | ||||| ||||||||||| || ||||||| |||||||||| Sbjct: 72892 tggacgggccggacgcacgcatcgccgactacttcgacgtgatcgccgggacgagcaccg 72951 Query: 249 g 249 | Sbjct: 72952 g 72952 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 ||||||| || |||||| |||| || ||||||||||| || ||||||| |||||||||| Sbjct: 56247 tggacggcccagatgctcggattgccgactacttcgacgtgatcgccgggacgagcaccg 56306 Query: 249 g 249 | Sbjct: 56307 g 56307 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 209 atcgcggactacttcgatgtcgtcgccggcacgagcaccgg 249 ||||| ||||||||||| || ||||||| ||||||||||| Sbjct: 42958 atcgccgactacttcgacgtgatcgccgggacgagcaccgg 42918
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 |||||||||| ||||| ||| | || ||||||||||| | |||||||||||||||||| Sbjct: 22361017 tggacgggccagatgcgaggctggccgactacttcgactacatcgccggcacgagcaccg 22360958 Query: 249 g 249 | Sbjct: 22360957 g 22360957
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 |||||||||| ||||| ||| | || ||||||||||| | |||||||||||||||||| Sbjct: 22289362 tggacgggccagatgcgaggctggccgactacttcgactacatcgccggcacgagcaccg 22289303 Query: 249 g 249 | Sbjct: 22289302 g 22289302
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 |||||||||| ||||| ||| | || ||||||||||| | |||||||||||||||||| Sbjct: 737 tggacgggccagatgcgaggctggccgactacttcgactacatcgccggcacgagcaccg 796 Query: 249 g 249 | Sbjct: 797 g 797
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 189 tggacgggccggatgctaggatcgcggactacttcgatgtcgtcgccggcacgagcaccg 248 |||||||||| ||||| ||| | || ||||||||||| | |||||||||||||||||| Sbjct: 146517 tggacgggccagatgcgaggctggccgactacttcgactacatcgccggcacgagcaccg 146576 Query: 249 g 249 | Sbjct: 146577 g 146577
>ref|XM_482944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 48.1 bits (24), Expect = 0.023 Identities = 111/140 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| |||||||||||||||| | || |||||||||| || | ||||||| ||| Sbjct: 336 ctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcgccagcctc 395 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||||| | ||||| | || || |||||||| ||||||||||| || Sbjct: 396 gaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactacttcgacgta 455 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 456 atcgccgggacgagcaccgg 475
>dbj|AK108679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-B01, full insert sequence Length = 1701 Score = 48.1 bits (24), Expect = 0.023 Identities = 111/140 (79%) Strand = Plus / Plus Query: 110 ctgagcgtcgacggcggcggcgtgagaggaatcatcccggccatcgtcctcgctttcctt 169 |||||| |||||||||||||||| | || |||||||||| || | ||||||| ||| Sbjct: 336 ctgagcatcgacggcggcggcgtccgcggcatcatcccgggcaccatcctcgccagcctc 395 Query: 170 gaaaaggagctccagaaattggacgggccggatgctaggatcgcggactacttcgatgtc 229 || || |||| ||||| | ||||| | || || |||||||| ||||||||||| || Sbjct: 396 gaggagaagctgcagaagctagacggcgccgacgcgaggatcgccgactacttcgacgta 455 Query: 230 gtcgccggcacgagcaccgg 249 ||||||| ||||||||||| Sbjct: 456 atcgccgggacgagcaccgg 475
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 299 ctgttcgacggcaaggatctggc 321 ||||||||||||||||||||||| Sbjct: 5075774 ctgttcgacggcaaggatctggc 5075796
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 219 acttcgatgtcgtcgccggcac 240 |||||||||||||||||||||| Sbjct: 2006363 acttcgatgtcgtcgccggcac 2006384
>emb|AM087204.1| Caenolestes fuliginosus partial adra2b gene for alpha-2B adrenergic receptor Length = 1119 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 3 taagctgccaccttctgttctt 24 |||||||||||||||||||||| Sbjct: 650 taagctgccaccttctgttctt 671
>ref|NM_123725.1| Arabidopsis thaliana nutrient reservoir AT5G43590 mRNA, complete cds Length = 1206 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 104 accatcctgagcgtcgacggcggcggcgtgagaggaatcat 144 |||||||| ||| ||||||||||||| || |||||||||| Sbjct: 43 accatcctcagcctcgacggcggcggagtccgaggaatcat 83
>gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1 (MOC1) gene, complete cds Length = 3176 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgtcgccggcacgagcaccgg 249 ||||||||||||||||||||| Sbjct: 2245 cgtcgccggcacgagcaccgg 2265
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgtcgccggcacgagcaccgg 249 ||||||||||||||||||||| Sbjct: 23932115 cgtcgccggcacgagcaccgg 23932135
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 cgtcgccggcacgagcaccgg 249 ||||||||||||||||||||| Sbjct: 61726 cgtcgccggcacgagcaccgg 61746
>dbj|AP006857.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0002E10 Length = 140486 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 ttgaaaaggagctccagaaattgga 192 ||||||||||| ||||||||||||| Sbjct: 94320 ttgaaaaggaggtccagaaattgga 94296
>dbj|AP005488.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0003D23 Length = 151604 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ttgaaaaggagctccagaaattgga 192 ||||||||||| ||||||||||||| Sbjct: 46932 ttgaaaaggaggtccagaaattgga 46956
>dbj|AB016875.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7 Length = 60476 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 104 accatcctgagcgtcgacggcggcggcgtgagaggaatcat 144 |||||||| ||| ||||||||||||| || |||||||||| Sbjct: 35343 accatcctcagcctcgacggcggcggagtccgaggaatcat 35303
>gb|AC090710.16| Homo sapiens 12 BAC RP11-754J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174302 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 ggctccatcttctcccagatc 391 ||||||||||||||||||||| Sbjct: 32782 ggctccatcttctcccagatc 32802
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ctgttcgacggcaaggatct 318 |||||||||||||||||||| Sbjct: 3997323 ctgttcgacggcaaggatct 3997304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ggccggccgctgttcgacgg 309 |||||||||||||||||||| Sbjct: 2599276 ggccggccgctgttcgacgg 2599295
>gb|AC113121.27| Mus musculus chromosome 8, clone RP23-347G12, complete sequence Length = 192877 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcttcccacagaactgcagg 370 |||||||||||||||||||| Sbjct: 14898 tcttcccacagaactgcagg 14917
>gb|AC154593.2| Mus musculus BAC clone RP23-350J12 from chromosome 14, complete sequence Length = 214057 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 ctggccaagttctacatcgacgag 340 |||||||||||||||||| ||||| Sbjct: 162551 ctggccaagttctacatccacgag 162574
>ref|XM_452187.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B14729g predicted mRNA Length = 1416 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 tggccaagttctacatcgac 337 |||||||||||||||||||| Sbjct: 269 tggccaagttctacatcgac 288
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 210 tcgcggactacttcgatgtcgtcgccgg 237 |||||||||||||||| |||||||||| Sbjct: 8124253 tcgcggactacttcgacctcgtcgccgg 8124280
>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 caaggatctggccaagttct 329 |||||||||||||||||||| Sbjct: 154908 caaggatctggccaagttct 154889
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1320834 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 tggccaagttctacatcgac 337 |||||||||||||||||||| Sbjct: 1294715 tggccaagttctacatcgac 1294696
>gb|AC024451.8| Homo sapiens chromosome 11, clone RP11-697N18, complete sequence Length = 159791 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcttcccacagaactgcagg 370 |||||||||||||||||||| Sbjct: 49130 tcttcccacagaactgcagg 49149
>gb|AE005991.1| Caulobacter crescentus CB15 section 317 of 359 of the complete genome Length = 12490 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tcctgagcgtcgacggcggcggcg 131 |||||||||||| ||||||||||| Sbjct: 964 tcctgagcgtcgccggcggcggcg 987
>gb|AC009389.9|AC009389 Drosophila melanogaster, chromosome 3R, region 98C-98C, BAC clone BACR01F12, complete sequence Length = 152853 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 ggcaaggatctggccaagttctac 331 ||||||||||||||| |||||||| Sbjct: 140950 ggcaaggatctggcccagttctac 140927
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 210 tcgcggactacttcgatgtcgtcgccgg 237 |||||||||||||||| |||||||||| Sbjct: 8122088 tcgcggactacttcgacctcgtcgccgg 8122115
>gb|AC007819.8|AC007819 Drosophila melanogaster, chromosome 3R, region 98C-98C, BAC clone BACR06K21, complete sequence Length = 189649 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 ggcaaggatctggccaagttctac 331 ||||||||||||||| |||||||| Sbjct: 47922 ggcaaggatctggcccagttctac 47899
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 210 tcgcggactacttcgatgtcgtcgccgg 237 |||||||||||||||| |||||||||| Sbjct: 55683 tcgcggactacttcgacctcgtcgccgg 55710
>gb|AE004596.1| Pseudomonas aeruginosa PAO1, section 157 of 529 of the complete genome Length = 11958 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ccggccgctgttcgacggca 311 |||||||||||||||||||| Sbjct: 2562 ccggccgctgttcgacggca 2581
>gb|AC131904.4| Homo sapiens chromosome 8, clone CTD-2328O16, complete sequence Length = 116803 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 tcttcccacagaactgcagg 370 |||||||||||||||||||| Sbjct: 29678 tcttcccacagaactgcagg 29659
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 gctgttcgacggcaaggatctggc 321 |||||||||||||||||| ||||| Sbjct: 1744059 gctgttcgacggcaaggacctggc 1744036
>gb|AF143948.1|AF143948 Pseudomonas aeruginosa putative spermidine synthase, serine/threonine protein kinase homolog, and hypothetical integral membrane protein genes, complete cds Length = 4857 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ccggccgctgttcgacggca 311 |||||||||||||||||||| Sbjct: 2035 ccggccgctgttcgacggca 2054
>gb|AE003764.3| Drosophila melanogaster chromosome 3R, section 102 of 118 of the complete sequence Length = 231455 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 308 ggcaaggatctggccaagttctac 331 ||||||||||||||| |||||||| Sbjct: 33399 ggcaaggatctggcccagttctac 33376
>gb|AC113049.22| Mus musculus chromosome 8, clone RP23-248P8, complete sequence Length = 200431 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tcttcccacagaactgcagg 370 |||||||||||||||||||| Sbjct: 174393 tcttcccacagaactgcagg 174412 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,395,998 Number of Sequences: 3902068 Number of extensions: 3395998 Number of successful extensions: 76916 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75796 Number of HSP's gapped (non-prelim): 1120 length of query: 422 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 400 effective length of database: 17,147,199,772 effective search space: 6858879908800 effective search space used: 6858879908800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
