ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CACB1_MOUSE (Q8R3Z5) Voltage-dependent L-type calcium channel be... 28 7.5
2CACB1_RABIT (P19517) Voltage-dependent L-type calcium channel be... 28 7.5
3CACB1_HUMAN (Q02641) Voltage-dependent L-type calcium channel be... 28 7.5
4CACB1_BOVIN (Q9MZL7) Voltage-dependent L-type calcium channel be... 28 7.5
5RANB9_MOUSE (P69566) Ran-binding protein 9 (RanBP9) (Ran-binding... 27 9.8
6SRR_MOUSE (Q9QZX7) Serine racemase (EC 5.1.1.-) 27 9.8

>CACB1_MOUSE (Q8R3Z5) Voltage-dependent L-type calcium channel beta-1 subunit|
           (CAB1) (Calcium channel, voltage-dependent, beta 1
           subunit)
          Length = 597

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  HPTPSLPPVAVAQRAKSTSGLAAWPGP 96
           HP  S PP  +  R  +T+ LAA P P
Sbjct: 413 HPPSSTPPNPLLNRTMATAALAASPAP 439



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>CACB1_RABIT (P19517) Voltage-dependent L-type calcium channel beta-1 subunit|
           (CAB1) (Calcium channel, voltage-dependent, beta 1
           subunit)
          Length = 524

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  HPTPSLPPVAVAQRAKSTSGLAAWPGP 96
           HP  S PP  +  R  +T+ LAA P P
Sbjct: 458 HPPSSTPPNPLLNRTMATAALAASPAP 484



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>CACB1_HUMAN (Q02641) Voltage-dependent L-type calcium channel beta-1 subunit|
           (CAB1) (Calcium channel, voltage-dependent, beta 1
           subunit)
          Length = 598

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  HPTPSLPPVAVAQRAKSTSGLAAWPGP 96
           HP  S PP  +  R  +T+ LAA P P
Sbjct: 413 HPPSSTPPNPLLNRTMATAALAASPAP 439



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>CACB1_BOVIN (Q9MZL7) Voltage-dependent L-type calcium channel beta-1 subunit|
           (CAB1) (Calcium channel, voltage-dependent, beta 1
           subunit)
          Length = 598

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  HPTPSLPPVAVAQRAKSTSGLAAWPGP 96
           HP  S PP  +  R  +T+ LAA P P
Sbjct: 413 HPPSSTPPNPLLNRTMATAALAASPAP 439



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>RANB9_MOUSE (P69566) Ran-binding protein 9 (RanBP9) (Ran-binding protein M)|
          (RanBPM) (B cell antigen receptor Ig beta-associated
          protein 1) (IBAP-1)
          Length = 653

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 19 PTPSLPPVAVAQRAKSTSGLAAWPGP 96
          P P  PP + A  A +  GLA  PGP
Sbjct: 14 PPPPPPPASAAAPATAPPGLAVGPGP 39



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>SRR_MOUSE (Q9QZX7) Serine racemase (EC 5.1.1.-)|
          Length = 339

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 1   SKFDHHPTPSL-PPVAVAQRAKSTSGLAAWP 90
           SK     TP+L PP  +A   KS+ GL  WP
Sbjct: 220 SKLKGELTPNLHPPETIADGVKSSIGLNTWP 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,269,687
Number of Sequences: 219361
Number of extensions: 242150
Number of successful extensions: 835
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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