ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 64 1e-10
2MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A 29 3.6

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 33/63 (52%), Positives = 36/63 (57%)
 Frame = +3

Query: 30  MTSVWKTKVLPGLSXXXXXXXXXXXXXEFLKSFNXXXXXXXXXXXXTELEPKVVETIEAS 209
           MTSVWKTKVL GL+             EFLKSFN            TELEPKVVE +E+S
Sbjct: 1   MTSVWKTKVLTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKVVEVVESS 60

Query: 210 PPE 218
           PPE
Sbjct: 61  PPE 63



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>MOAA_ERWCT (Q6D3C7) Molybdenum cofactor biosynthesis protein A|
          Length = 329

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  EGEEYDERMEDQGSPRAQQVLRQGWQEGRRRR 112
           EG E   R    G    QQ+L+QGWQ+ +R R
Sbjct: 198 EGGELFRRHHVSGEVIRQQLLQQGWQQQQRAR 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,646,620
Number of Sequences: 219361
Number of extensions: 250570
Number of successful extensions: 872
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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