ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188639.1| Oryza sativa (japonica cultivar-group), Ozsa824... 182 4e-43
2dbj|AK065256.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 4e-43
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
4dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
5ref|XM_512578.1| PREDICTED: Pan troglodytes similar to chromosom... 44 0.23
6gb|AE009144.1| Agrobacterium tumefaciens str. C58 circular chrom... 44 0.23
7ref|NM_015578.1| Homo sapiens LSM14 homolog A (SCD6, S. cerevisi... 44 0.23
8gb|BC016842.1| Homo sapiens LSM14 homolog A (SCD6, S. cerevisiae... 44 0.23
9emb|CR861180.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1116 (from cl... 44 0.23
10emb|AL834398.1|HSM805482 Homo sapiens mRNA; cDNA DKFZp547L1110 (... 44 0.23
11dbj|AK127401.1| Homo sapiens cDNA FLJ45492 fis, clone BRTHA2008502 44 0.23
12dbj|AK027643.1| Homo sapiens cDNA FLJ14737 fis, clone NT2RP30022... 44 0.23
13dbj|AK027369.1| Homo sapiens cDNA FLJ14463 fis, clone MAMMA10002... 44 0.23
14gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 44 0.23
15gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, com... 44 0.23
16dbj|AB069975.1| Homo sapiens mRNA for alphaSNBP(B), complete cds 44 0.23
17dbj|AB069974.1| Homo sapiens mRNA for alphaSNBP(A), complete cds 44 0.23
18gb|AY106060.1| Zea mays PCO086292 mRNA sequence 44 0.23
19emb|AL831725.5| Mouse DNA sequence from clone RP23-106P7 on chro... 44 0.23
20emb|AL833221.1|HSM804532 Homo sapiens mRNA; cDNA DKFZp667H157 (f... 44 0.23
21ref|XM_470278.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.91
22gb|AE013000.1| Thermoanaerobacter tengcongensis MB4, section 27 ... 42 0.91
23ref|XM_454145.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E04345g ... 42 0.91
24gb|AY577000.1| Danio rerio clone RZ150A1H09 C19orf13-like protei... 42 0.91
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.91
26ref|XM_569294.1| Cryptococcus neoformans var. neoformans JEC21 6... 42 0.91
27emb|AL445492.10| Human DNA sequence from clone RP11-137O18 on ch... 42 0.91
28emb|AL133280.12| Human DNA sequence from clone RP3-514P16 on chr... 42 0.91
29gb|BC065685.1| Danio rerio zgc:77202, mRNA (cDNA clone MGC:77202... 42 0.91
30gb|BC047185.1| Danio rerio zgc:77202, mRNA (cDNA clone MGC:55754... 42 0.91
31emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 0.91
32ref|NM_214745.1| Danio rerio zgc:77202 (zgc:77202), mRNA 42 0.91
33ref|NM_214772.1| Danio rerio zgc:77202 (zgc:77202), mRNA 42 0.91
34emb|CR933662.1| Homo sapiens mRNA; cDNA DKFZp781M0415 (from clon... 42 0.91
35gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 0.91
36gb|AF369707.1| Capsicum annuum importin alpha 2 mRNA, complete cds 42 0.91
37gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 geno... 42 0.91
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
39dbj|AK121254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
40dbj|AK066462.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.91
41gb|AF003389.2| Caenorhabditis elegans cosmid F23H11, complete se... 40 3.6
42ref|XM_463615.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
43ref|XM_472218.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
44ref|XM_365668.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 3.6
45ref|XM_459497.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 3.6
46gb|BC019463.1| Mus musculus WD repeat domain 33, mRNA (cDNA clon... 40 3.6
47gb|BC030076.1| Mus musculus WD repeat domain 33, mRNA (cDNA clon... 40 3.6
48gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 3.6
49gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome... 40 3.6
50gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome... 40 3.6
51gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, com... 40 3.6
52emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 3.6
53emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4,... 40 3.6
54gb|AC116991.2| Homo sapiens chromosome 3 clone RP11-264M9, compl... 40 3.6
55emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 i... 40 3.6
56dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 3.6
57gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of ... 40 3.6
58gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 3.6
59gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, comp... 40 3.6
60dbj|AK161982.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 3.6
61dbj|AK078286.1| Mus musculus adult male olfactory brain cDNA, RI... 40 3.6
62dbj|AK003256.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 40 3.6
63dbj|AK009297.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 3.6
64dbj|AK045923.1| Mus musculus adult male corpora quadrigemina cDN... 40 3.6
65dbj|AK050653.1| Mus musculus 2 days neonate thymus thymic cells ... 40 3.6
66dbj|AK045125.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 3.6
67ref|NM_064887.2| Caenorhabditis elegans F23H11.3 (F23H11.3) mRNA... 40 3.6
68dbj|AK018408.1| Mus musculus 16 days embryo lung cDNA, RIKEN ful... 40 3.6
69dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
70gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cance... 40 3.6
71gb|AC006336.4|AC006336 Homo sapiens BAC clone RP11-508K5 from Y,... 40 3.6
72dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
73ref|XM_226076.3| PREDICTED: Rattus norvegicus WD repeat domain 3... 40 3.6
74gb|AF172724.1|AF172724 Caulobacter crescentus structural mainten... 40 3.6
75gb|AC116137.19| Mus musculus chromosome 19, clone RP23-122L1, co... 40 3.6
76gb|AC116863.6| Mus musculus chromosome 19, clone RP24-408G9, com... 40 3.6
77gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 3.6
78dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.6
79dbj|AP000820.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.6
80emb|AM114764.1| Platynereis dumerilii partial mRNA for axonemal ... 40 3.6
81gb|U21216.1|SPU21216 Streptomyces pristinaespiralis NADH:FMN oxi... 40 3.6 
>ref|NM_188639.1| Oryza sativa (japonica cultivar-group), Ozsa8242 predicted mRNA
          Length = 615

 Score =  182 bits (92), Expect = 4e-43
 Identities = 161/184 (87%)
 Strand = Plus / Plus

                                                                       
Query: 42  tggaagaccaaggttctccccgggctcagcaagttcttcgacaaggatggcaagaaggcc 101
           |||||||||||||||||| | || |||| |||| |||| ||||||||||| |||||||| 
Sbjct: 13  tggaagaccaaggttctcactggactcaacaagctctttgacaaggatggaaagaaggct 72

                                                                       
Query: 102 gccgccgccgagttcttgaaatccttcaacaaggaagagattgacaaggagattgaggac 161
           || || || |||||||||||||| ||||||||||| ||||||| |||||||||||| |||
Sbjct: 73  gctgctgctgagttcttgaaatcattcaacaaggaggagattggcaaggagattgatgac 132

                                                                       
Query: 162 aagaagacagaactagagcccaaggttgtggagactattgaagcatctcctccagaaatt 221
           ||||||||||| |||||||||||||||||||||  | ||||  |||||||||| || |||
Sbjct: 133 aagaagacagagctagagcccaaggttgtggaggttgttgagtcatctcctcctgagatt 192

               
Query: 222 aagg 225
           ||||
Sbjct: 193 aagg 196
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>dbj|AK065256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J14, full
           insert sequence
          Length = 1243

 Score =  182 bits (92), Expect = 4e-43
 Identities = 161/184 (87%)
 Strand = Plus / Plus

                                                                       
Query: 42  tggaagaccaaggttctccccgggctcagcaagttcttcgacaaggatggcaagaaggcc 101
           |||||||||||||||||| | || |||| |||| |||| ||||||||||| |||||||| 
Sbjct: 156 tggaagaccaaggttctcactggactcaacaagctctttgacaaggatggaaagaaggct 215

                                                                       
Query: 102 gccgccgccgagttcttgaaatccttcaacaaggaagagattgacaaggagattgaggac 161
           || || || |||||||||||||| ||||||||||| ||||||| |||||||||||| |||
Sbjct: 216 gctgctgctgagttcttgaaatcattcaacaaggaggagattggcaaggagattgatgac 275

                                                                       
Query: 162 aagaagacagaactagagcccaaggttgtggagactattgaagcatctcctccagaaatt 221
           ||||||||||| |||||||||||||||||||||  | ||||  |||||||||| || |||
Sbjct: 276 aagaagacagagctagagcccaaggttgtggaggttgttgagtcatctcctcctgagatt 335

               
Query: 222 aagg 225
           ||||
Sbjct: 336 aagg 339
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                           
Query: 133     aggaagagattgacaaggagattgaggacaagaagacagaactagagcccaaggttgtgg 192
               |||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 7364606 aggaggagattggcaaggagattgatgacaagaagacagagctagagcccaaggttgtgg 7364547

                                                
Query: 193     agactattgaagcatctcctccagaaattaagg 225
               ||  | ||||  |||||||||| || |||||||
Sbjct: 7364546 aggttgttgagtcatctcctcctgagattaagg 7364514



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                           
Query: 42      tggaagaccaaggttctccccgggctcagcaagttcttcgacaaggatggcaagaaggcc 101
               |||||||||||||||||| | || |||| |||| |||| ||||||||||| |||||||| 
Sbjct: 7364801 tggaagaccaaggttctcactggactcaacaagctctttgacaaggatggaaagaaggct 7364742

                                                 
Query: 102     gccgccgccgagttcttgaaatccttcaacaagg 135
               || || || |||||||||||||| ||||||||||
Sbjct: 7364741 gctgctgctgagttcttgaaatcattcaacaagg 7364708



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 92       caagaaggccgccgccgccg 111
                ||||||||||||||||||||
Sbjct: 40087658 caagaaggccgccgccgccg 40087677
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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0702F03
          Length = 141111

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                         
Query: 133   aggaagagattgacaaggagattgaggacaagaagacagaactagagcccaaggttgtgg 192
             |||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 25634 aggaggagattggcaaggagattgatgacaagaagacagagctagagcccaaggttgtgg 25575

                                              
Query: 193   agactattgaagcatctcctccagaaattaagg 225
             ||  | ||||  |||||||||| || |||||||
Sbjct: 25574 aggttgttgagtcatctcctcctgagattaagg 25542



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                         
Query: 42    tggaagaccaaggttctccccgggctcagcaagttcttcgacaaggatggcaagaaggcc 101
             |||||||||||||||||| | || |||| |||| |||| ||||||||||| |||||||| 
Sbjct: 25829 tggaagaccaaggttctcactggactcaacaagctctttgacaaggatggaaagaaggct 25770

                                               
Query: 102   gccgccgccgagttcttgaaatccttcaacaagg 135
             || || || |||||||||||||| ||||||||||
Sbjct: 25769 gctgctgctgagttcttgaaatcattcaacaagg 25736
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>ref|XM_512578.1| PREDICTED: Pan troglodytes similar to chromosome 19 open reading
           frame 13 (LOC455937), mRNA
          Length = 1330

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 126 ttcaacaaggaagagattgaca 147
           ||||||||||||||||||||||
Sbjct: 736 ttcaacaaggaagagattgaca 757
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>gb|AE009144.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 170
            of 256 of the complete sequence
          Length = 10570

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 74   gttcttcgacaaggatggcaag 95
            ||||||||||||||||||||||
Sbjct: 6692 gttcttcgacaaggatggcaag 6713
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>ref|NM_015578.1| Homo sapiens LSM14 homolog A (SCD6, S. cerevisiae) (LSM14A), mRNA
          Length = 3389

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 990  ttcaacaaggaagagattgaca 1011
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>gb|BC016842.1| Homo sapiens LSM14 homolog A (SCD6, S. cerevisiae), mRNA (cDNA clone
            MGC:10135 IMAGE:3902704), complete cds
          Length = 2300

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 1109 ttcaacaaggaagagattgaca 1130
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>emb|CR861180.1| Pongo pygmaeus mRNA; cDNA DKFZp459H1116 (from clone DKFZp459H1116)
          Length = 2117

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 126 ttcaacaaggaagagattgaca 147
           ||||||||||||||||||||||
Sbjct: 931 ttcaacaaggaagagattgaca 952
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>emb|AL834398.1|HSM805482 Homo sapiens mRNA; cDNA DKFZp547L1110 (from clone DKFZp547L1110)
          Length = 2306

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 1018 ttcaacaaggaagagattgaca 1039
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>dbj|AK127401.1| Homo sapiens cDNA FLJ45492 fis, clone BRTHA2008502
          Length = 3625

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 1232 ttcaacaaggaagagattgaca 1253
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>dbj|AK027643.1| Homo sapiens cDNA FLJ14737 fis, clone NT2RP3002273, weakly similar to
            SCD6 PROTEIN
          Length = 3389

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 990  ttcaacaaggaagagattgaca 1011
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>dbj|AK027369.1| Homo sapiens cDNA FLJ14463 fis, clone MAMMA1000284, moderately
           similar to P.walti mRNA for rnp associated protein 55
          Length = 1900

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 126 ttcaacaaggaagagattgaca 147
           ||||||||||||||||||||||
Sbjct: 719 ttcaacaaggaagagattgaca 740
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 74      gttcttcgacaaggatggcaag 95
               ||||||||||||||||||||||
Sbjct: 1882222 gttcttcgacaaggatggcaag 1882243
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>gb|AC010614.8| Homo sapiens chromosome 19 clone CTD-2518G19, complete sequence
          Length = 158595

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 126   ttcaacaaggaagagattgaca 147
             ||||||||||||||||||||||
Sbjct: 77167 ttcaacaaggaagagattgaca 77188
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>dbj|AB069975.1| Homo sapiens mRNA for alphaSNBP(B), complete cds
          Length = 1839

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 988  ttcaacaaggaagagattgaca 1009
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>dbj|AB069974.1| Homo sapiens mRNA for alphaSNBP(A), complete cds
          Length = 1896

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 126  ttcaacaaggaagagattgaca 147
            ||||||||||||||||||||||
Sbjct: 988  ttcaacaaggaagagattgaca 1009
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>gb|AY106060.1| Zea mays PCO086292 mRNA sequence
          Length = 717

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 90  ggcaagaaggccgccgccgccg 111
           ||||||||||||||||||||||
Sbjct: 198 ggcaagaaggccgccgccgccg 219
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>emb|AL831725.5| Mouse DNA sequence from clone RP23-106P7 on chromosome X, complete
             sequence
          Length = 174712

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 212   tccagaaattaagggcttgata 233
             ||||||||||||||||||||||
Sbjct: 90449 tccagaaattaagggcttgata 90428
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>emb|AL833221.1|HSM804532 Homo sapiens mRNA; cDNA DKFZp667H157 (from clone DKFZp667H157)
          Length = 3054

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 126 ttcaacaaggaagagattgaca 147
           ||||||||||||||||||||||
Sbjct: 582 ttcaacaaggaagagattgaca 603
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>ref|XM_470278.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2039

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  gccgccgccgccgagttcttg 119
           |||||||||||||||||||||
Sbjct: 227 gccgccgccgccgagttcttg 207
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>gb|AE013000.1| Thermoanaerobacter tengcongensis MB4, section 27 of 244 of the
            complete genome
          Length = 10206

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 9    acatctttgaaggagaggaatatga 33
            |||||||||||| ||||||||||||
Sbjct: 8631 acatctttgaagaagaggaatatga 8655
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>ref|XM_454145.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E04345g predicted mRNA
          Length = 1287

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  atggcaagaaggccgccgccg 108
           |||||||||||||||||||||
Sbjct: 470 atggcaagaaggccgccgccg 490
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>gb|AY577000.1| Danio rerio clone RZ150A1H09 C19orf13-like protein mRNA, complete
           cds
          Length = 1701

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ttcaacaaggaagagattgac 146
           |||||||||||||||||||||
Sbjct: 972 ttcaacaaggaagagattgac 992
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 99      gccgccgccgccgagttcttg 119
               |||||||||||||||||||||
Sbjct: 3635979 gccgccgccgccgagttcttg 3635959
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>ref|XM_569294.1| Cryptococcus neoformans var. neoformans JEC21 60s ribosomal protein
           (CNB05510) partial mRNA
          Length = 607

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 90  ggcaagaaggccgccgccgcc 110
           |||||||||||||||||||||
Sbjct: 442 ggcaagaaggccgccgccgcc 462
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>emb|AL445492.10| Human DNA sequence from clone RP11-137O18 on chromosome 10 Contains part
              of the gene for VPS10 domain receptor protein SORCS 3
              (SORCS3), complete sequence
          Length = 149248

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 126    ttcaacaaggaagagattgacaagg 150
              ||||| |||||||||||||||||||
Sbjct: 139184 ttcaaaaaggaagagattgacaagg 139160
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>emb|AL133280.12| Human DNA sequence from clone RP3-514P16 on chromosome Xq21.33-22.2
             Contains a protein kinase C iota (PRKCI) pseudogene,
             complete sequence
          Length = 27482

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   agagcccaaggttgtggagac 196
             |||||||||||||||||||||
Sbjct: 10944 agagcccaaggttgtggagac 10924
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>gb|BC065685.1| Danio rerio zgc:77202, mRNA (cDNA clone MGC:77202 IMAGE:6962125),
           complete cds
          Length = 3397

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ttcaacaaggaagagattgac 146
           |||||||||||||||||||||
Sbjct: 960 ttcaacaaggaagagattgac 980
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>gb|BC047185.1| Danio rerio zgc:77202, mRNA (cDNA clone MGC:55754 IMAGE:3816509),
            complete cds
          Length = 3435

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 126  ttcaacaaggaagagattgac 146
            |||||||||||||||||||||
Sbjct: 992  ttcaacaaggaagagattgac 1012
to top
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2234072

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     atggcaagaaggccgccgccg 108
              |||||||||||||||||||||
Sbjct: 401312 atggcaagaaggccgccgccg 401292
to top
>ref|NM_214745.1| Danio rerio zgc:77202 (zgc:77202), mRNA
          Length = 3397

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ttcaacaaggaagagattgac 146
           |||||||||||||||||||||
Sbjct: 960 ttcaacaaggaagagattgac 980
to top
>ref|NM_214772.1| Danio rerio zgc:77202 (zgc:77202), mRNA
          Length = 3435

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 126  ttcaacaaggaagagattgac 146
            |||||||||||||||||||||
Sbjct: 992  ttcaacaaggaagagattgac 1012
to top
>emb|CR933662.1| Homo sapiens mRNA; cDNA DKFZp781M0415 (from clone DKFZp781M0415)
          Length = 5410

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 176  agagcccaaggttgtggagac 196
            |||||||||||||||||||||
Sbjct: 4273 agagcccaaggttgtggagac 4253
to top
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 90      ggcaagaaggccgccgccgcc 110
               |||||||||||||||||||||
Sbjct: 1547437 ggcaagaaggccgccgccgcc 1547417
to top
>gb|AF369707.1| Capsicum annuum importin alpha 2 mRNA, complete cds
          Length = 2096

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  aagaaggccgccgccgccgag 113
           |||||||||||||||||||||
Sbjct: 88  aagaaggccgccgccgccgag 108
to top
>gb|AC073556.11| Oryza sativa chromosome 3 BAC OSJNBa0091P11 genomic sequence, complete
              sequence
          Length = 160738

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     gccgccgccgccgagttcttg 119
              |||||||||||||||||||||
Sbjct: 145398 gccgccgccgccgagttcttg 145418
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 99      gccgccgccgccgagttcttg 119
               |||||||||||||||||||||
Sbjct: 3636090 gccgccgccgccgagttcttg 3636070
to top
>dbj|AK121254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102A19, full
           insert sequence
          Length = 2337

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  gccgccgccgccgagttcttg 119
           |||||||||||||||||||||
Sbjct: 595 gccgccgccgccgagttcttg 575
to top
>dbj|AK066462.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067A01, full
           insert sequence
          Length = 1761

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 100 ccgccgccgccgagttcttga 120
           |||||||||||||||||||||
Sbjct: 462 ccgccgccgccgagttcttga 482
to top
>gb|AF003389.2| Caenorhabditis elegans cosmid F23H11, complete sequence
          Length = 30610

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  gccgccgagttcttgaaatc 124
            ||||||||||||||||||||
Sbjct: 4758 gccgccgagttcttgaaatc 4739
to top
>ref|XM_463615.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  caagaaggccgccgccgccg 111
           ||||||||||||||||||||
Sbjct: 717 caagaaggccgccgccgccg 736
to top
>ref|XM_472218.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  caagaaggccgccgccgccg 111
           ||||||||||||||||||||
Sbjct: 543 caagaaggccgccgccgccg 562
to top
>ref|XM_365668.1| Magnaporthe grisea 70-15 hypothetical protein (MG02370.4) partial
           mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 99  gccgccgccgccgagttctt 118
           ||||||||||||||||||||
Sbjct: 370 gccgccgccgccgagttctt 389
to top
>ref|XM_459497.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E04752g)
           partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 atccaagatcaagaagaatt 267
           ||||||||||||||||||||
Sbjct: 499 atccaagatcaagaagaatt 518
to top
>gb|BC019463.1| Mus musculus WD repeat domain 33, mRNA (cDNA clone
          IMAGE:4035918), complete cds
          Length = 1215

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 76 catctttgaaggagaggaat 95
to top
>gb|BC030076.1| Mus musculus WD repeat domain 33, mRNA (cDNA clone
          IMAGE:1511452), complete cds
          Length = 1046

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 8  catctttgaaggagaggaat 27
to top
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      caaggatggcaagaaggccg 102
               ||||||||||||||||||||
Sbjct: 2184976 caaggatggcaagaaggccg 2184995
to top
>gb|AC131761.4| Mus musculus BAC clone RP24-228J4 from chromosome 18, complete sequence
          Length = 167442

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     catctttgaaggagaggaat 29
              ||||||||||||||||||||
Sbjct: 163704 catctttgaaggagaggaat 163685
to top
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence
          Length = 171769

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     catctttgaaggagaggaat 29
              ||||||||||||||||||||
Sbjct: 132013 catctttgaaggagaggaat 132032
to top
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence
          Length = 186860

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    catctttgaaggagaggaat 29
             ||||||||||||||||||||
Sbjct: 23876 catctttgaaggagaggaat 23857
to top
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    atccaagatcaagaagaatt 267
              ||||||||||||||||||||
Sbjct: 343929 atccaagatcaagaagaatt 343910
to top
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01,
             complete sequence
          Length = 148353

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    caagaaggccgccgccgccg 111
             ||||||||||||||||||||
Sbjct: 97029 caagaaggccgccgccgccg 97010
to top
>gb|AC116991.2| Homo sapiens chromosome 3 clone RP11-264M9, complete sequence
          Length = 152794

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ctttgaaggagaggaatatg 32
              ||||||||||||||||||||
Sbjct: 119261 ctttgaaggagaggaatatg 119280
to top
>emb|BX510990.32| Zebrafish DNA sequence from clone CH211-67F13 in linkage group 13,
             complete sequence
          Length = 210138

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aacaaggaagagattgacaa 148
             ||||||||||||||||||||
Sbjct: 76539 aacaaggaagagattgacaa 76558
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      ggatggcaagaaggccgccg 105
               ||||||||||||||||||||
Sbjct: 3981417 ggatggcaagaaggccgccg 3981436
to top
>gb|AE005710.1| Caulobacter crescentus CB15 section 36 of 359 of the complete genome
          Length = 11283

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   aggccgccgccgccgagttc 116
            ||||||||||||||||||||
Sbjct: 7152 aggccgccgccgccgagttc 7133
to top
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     caagaaggccgccgccgccg 111
              ||||||||||||||||||||
Sbjct: 900103 caagaaggccgccgccgccg 900122
to top
>gb|AC104302.2| Homo sapiens chromosome 3 clone RP11-379L20, complete sequence
          Length = 206872

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     ctttgaaggagaggaatatg 32
              ||||||||||||||||||||
Sbjct: 179333 ctttgaaggagaggaatatg 179314
to top
>dbj|AK161982.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
          enriched library, clone:6530442D05 product:WDC146
          homolog, full insert sequence
          Length = 2501

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 36 catctttgaaggagaggaat 55
to top
>dbj|AK078286.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
          enriched library, clone:6430571H07 product:hypothetical
          Trp-Asp (WD) repeats profile/Trp-Asp (WD) repeats
          circular profile/G-protein beta WD-40 repeats
          containing protein, full insert sequence
          Length = 1116

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 44 catctttgaaggagaggaat 63
to top
>dbj|AK003256.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
          enriched library, clone:1110001N06 product:hypothetical
          G-protein beta WD-40 repeats containing protein, full
          insert sequence
          Length = 1166

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 44 catctttgaaggagaggaat 63
to top
>dbj|AK009297.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
          library, clone:2310011G05 product:similar to WDC146
          [Homo sapiens], full insert sequence
          Length = 1023

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 43 catctttgaaggagaggaat 62
to top
>dbj|AK045923.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
          full-length enriched library, clone:B230323K17
          product:hypothetical Trp-Asp (WD) repeats
          profile/Trp-Asp (WD) repeats circular profile/G-protein
          beta WD-40 repeats containing protein, full insert
          sequence
          Length = 1592

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 35 catctttgaaggagaggaat 54
to top
>dbj|AK050653.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
          full-length enriched library, clone:C920029N20
          product:WDC146 homolog [Homo sapiens], full insert
          sequence
          Length = 1773

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 36 catctttgaaggagaggaat 55
to top
>dbj|AK045125.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN
          full-length enriched library, clone:B130038H15
          product:RIKEN cDNA 1110001N06 gene, full insert
          sequence
          Length = 1210

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 36 catctttgaaggagaggaat 55
to top
>ref|NM_064887.2| Caenorhabditis elegans F23H11.3 (F23H11.3) mRNA, complete cds
          Length = 1118

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 gccgccgagttcttgaaatc 124
           ||||||||||||||||||||
Sbjct: 748 gccgccgagttcttgaaatc 767
to top
>dbj|AK018408.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched
          library, clone:8430413N20 product:RIKEN cDNA 1110001N06
          gene, full insert sequence
          Length = 1755

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 44 catctttgaaggagaggaat 63
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 92       caagaaggccgccgccgccg 111
                ||||||||||||||||||||
Sbjct: 18516402 caagaaggccgccgccgccg 18516383
to top
>gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202028

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 149    ggagattgaggacaagaagacaga 172
              ||||||||||| ||||||||||||
Sbjct: 180716 ggagattgaggccaagaagacaga 180739
to top
>gb|AC006336.4|AC006336 Homo sapiens BAC clone RP11-508K5 from Y, complete sequence
          Length = 95956

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttgaggacaagaagacagaa 173
             ||||||||||||||||||||
Sbjct: 75357 ttgaggacaagaagacagaa 75376
to top
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    caagaaggccgccgccgccg 111
             ||||||||||||||||||||
Sbjct: 30742 caagaaggccgccgccgccg 30761
to top
>ref|XM_226076.3| PREDICTED: Rattus norvegicus WD repeat domain 33 (predicted)
          (Wdr33_predicted), mRNA
          Length = 5128

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 catctttgaaggagaggaat 29
          ||||||||||||||||||||
Sbjct: 76 catctttgaaggagaggaat 95
to top
>gb|AF172724.1|AF172724 Caulobacter crescentus structural maintenance of chromosomes protein
            homolog Smc (smc) gene, complete cds
          Length = 3701

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   aggccgccgccgccgagttc 116
            ||||||||||||||||||||
Sbjct: 1025 aggccgccgccgccgagttc 1044
to top
>gb|AC116137.19| Mus musculus chromosome 19, clone RP23-122L1, complete sequence
          Length = 170307

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    aagcatctcctccagaaatt 221
              ||||||||||||||||||||
Sbjct: 167674 aagcatctcctccagaaatt 167655
to top
>gb|AC116863.6| Mus musculus chromosome 19, clone RP24-408G9, complete sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   aagcatctcctccagaaatt 221
             ||||||||||||||||||||
Sbjct: 99928 aagcatctcctccagaaatt 99947
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      ggatggcaagaaggccgccg 105
               ||||||||||||||||||||
Sbjct: 3983710 ggatggcaagaaggccgccg 3983729
to top
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
              sequence
          Length = 175731

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    ataaaggataagaaaacatc 250
              ||||||||||||||||||||
Sbjct: 121870 ataaaggataagaaaacatc 121889
to top
>dbj|AP000820.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-644L4, complete
             sequence
          Length = 159644

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   ataaaggataagaaaacatc 250
             ||||||||||||||||||||
Sbjct: 35030 ataaaggataagaaaacatc 35049
to top
>emb|AM114764.1| Platynereis dumerilii partial mRNA for axonemal dynein heavy chain
            protein (adhc gene)
          Length = 5268

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  caaggagattgaggacaaga 165
            ||||||||||||||||||||
Sbjct: 2619 caaggagattgaggacaaga 2638
to top
>gb|U21216.1|SPU21216 Streptomyces pristinaespiralis NADH:FMN oxidoreductase (snaC) gene,
           complete cds
          Length = 770

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 98  ggccgccgccgccgagttct 117
           ||||||||||||||||||||
Sbjct: 427 ggccgccgccgccgagttct 446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,609,340
Number of Sequences: 3902068
Number of extensions: 3609340
Number of successful extensions: 95408
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94697
Number of HSP's gapped (non-prelim): 711
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top