>HES3_MOUSE (Q61657) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 403 QIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQV 269
           Q+RS  + H  HQ   RK  +A  + L+V    +LQ  +Q  W V
Sbjct: 15  QLRSLLERHYSHQIRKRKLEKADILELSVKYMRSLQNSLQGLWPV 59

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 373  IHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQVVQNQARQKQLQKLHQV 221
            I Q  S++QH+  Q   A    L+ Q+   +     Q+QA+Q+QLQ++ ++
Sbjct: 3911 IQQHQSQQQHQVQQQNQAQQQHLSQQQHQSQQQLNQQHQAQQQQLQQIQKL 3961

>HES3_RAT (Q04667) Transcription factor HES-3 (Hairy and enhancer of split 3)|
          Length = 175

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 403 QIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQV 269
           Q+RS  + H  HQ   RK  +A  + L+V    +LQ  +Q  W V
Sbjct: 15  QLRSLLERHYSHQIRKRKLEKADILELSVKYVRSLQNSLQGLWLV 59

>MT2C_RABIT (P80290) Metallothionein-2C (MT-2C) (Metallothionein-IIC) (MT-IIC)|
          Length = 62

 Score = 26.2 bits (56), Expect(2) = 6.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 240 SCFCLAWFCTTCHASCTFFC 299
           SC C A  CT+C  SC   C
Sbjct: 19  SCTCKACKCTSCKKSCCSCC 38



 Score = 21.6 bits (44), Expect(2) = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 161 STARRTATCGISKTTRPCRC 220
           +TA  + TC  S T + C+C
Sbjct: 8   ATAGDSCTCANSCTCKACKC 27

>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)|
           (dPAS1)
          Length = 1027

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -2

Query: 412 YRHQIRSYRQSHGIHQFASRKQHEACQMVLAVATRLTLQKKVQEAWQVVQNQARQKQLQK 233
           ++H ++   QSH   Q  +++QH+  Q       +   Q++ Q+  Q  Q Q +Q+QLQ 
Sbjct: 779 HQHNLQQQHQSHSQLQQHTQQQHQQ-QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQL 837

Query: 232 LHQ 224
             Q
Sbjct: 838 QQQ 840


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,862,317
Number of Sequences: 219361
Number of extensions: 798346
Number of successful extensions: 3094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3087
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)