ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B p... 30 2.3
2LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B p... 29 5.2

>LRC4B_MOUSE (P0C192) Leucine-rich repeat-containing protein 4B precursor|
          Length = 709

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 410 GGSLSRPRGQHREPRLPRPQGAWAAGR 330
           G    +PRG  +EP  P   GAW  GR
Sbjct: 499 GEEAQQPRGTEKEPPGPTTDGAWGGGR 525



to top

>LRC4B_HUMAN (Q9NT99) Leucine-rich repeat-containing protein 4B precursor|
          Length = 713

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 410 GGSLSRPRGQHREPRLPRPQGAWAAGRCG 324
           G    +PRG  +EP  P   G W  GR G
Sbjct: 500 GEEALQPRGTEKEPPGPTTDGVWGGGRPG 528


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,325,408
Number of Sequences: 219361
Number of extensions: 322836
Number of successful extensions: 1116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top