Clone Information

BLAST Search Result

Clone Name	bart50d04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ENV_MLVAV (P03386) Env polyprotein precursor (Coat polyprotein) ...	32	0.43
2	FNBP2_HUMAN (O75044) SLIT-ROBO Rho GTPase-activating protein 2 (...	30	1.3
3	CPO_DROME (Q01617) Protein couch potato	30	2.1
4	PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor typ...	29	2.8
5	TXLNB_CHICK (Q9I969) Beta-taxilin (Muscle-derived protein 77)	29	3.6
6	EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400...	29	3.6
7	KCNH4_HUMAN (Q9UQ05) Potassium voltage-gated channel subfamily H...	29	3.6
8	IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Ir...	28	4.8
9	FENR2_TOBAC (O04397) Ferredoxin--NADP reductase, root-type isozy...	28	4.8
10	SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot...	28	4.8
11	VRP1_YEAST (P37370) Verprolin	28	4.8
12	DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypept...	28	4.8
13	FBN1_MOUSE (Q61554) Fibrillin-1 precursor	28	4.8
14	FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)	28	4.8
15	HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (...	28	4.8
16	GBX2_MOUSE (P48031) Homeobox protein GBX-2 (Gastrulation and bra...	28	4.8
17	GBX2_HUMAN (P52951) Homeobox protein GBX-2 (Gastrulation and bra...	28	4.8
18	TDRD6_MOUSE (P61407) Tudor domain-containing protein 6	28	6.2
19	STRC_MOUSE (Q8VIM6) Stereocilin precursor	28	6.2
20	CB017_HUMAN (Q8NC44) Protein C2orf17	28	6.2
21	MMP21_HUMAN (Q8N119) Matrix metalloproteinase-21 precursor (EC 3...	28	6.2
22	VE4_HPV05 (P06924) Probable protein E4	28	6.2
23	SPY4_MOUSE (Q9WTP2) Sprouty homolog 4 (Spry-4)	28	6.2
24	AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Pro...	28	6.2
25	CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)	28	6.2
26	FBN1_HUMAN (P35555) Fibrillin-1 precursor	28	6.2
27	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	28	8.1
28	GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor (H...	28	8.1
29	VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription fact...	28	8.1
30	DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)...	28	8.1
31	DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)	28	8.1
32	ZIPA_ECOL6 (Q8FFC0) Cell division protein zipA homolog	28	8.1
33	USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A p...	28	8.1
34	PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presyna...	28	8.1
35	MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia p...	28	8.1
36	SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing prote...	28	8.1
37	PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor t...	28	8.1
38	DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)	28	8.1
39	AMEL_PIG (P45561) Amelogenin precursor (Amelogenin 173A/173B) (L...	28	8.1
40	TENS1_HUMAN (Q9HBL0) Tensin-1	28	8.1

>ENV_MLVAV (P03386) Env polyprotein precursor (Coat polyprotein) [Contains:|
           Coat protein GP70; Spike protein p15E; R protein]
          Length = 669

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPI-GPTPSSSRSDFTAGELAMSIRPLWLPEPPP 152
           P L   RP S+P+P   P PS+S    T         PL LPEPPP
Sbjct: 272 PVLSDRRPPSRPRPTRSPPPSNSTPTET---------PLTLPEPPP 308

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>FNBP2_HUMAN (O75044) SLIT-ROBO Rho GTPase-activating protein 2 (srGAP2)|
            (Formin-binding protein 2)
          Length = 1071

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +3

Query: 18   PSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRP-----LWLPEPPPDVDRAPEIF 179
            P+  PS P        P P+  RS  TAG++A + RP     +  P  PP     P +F
Sbjct: 988  PTSEPSSPLHTQLLKDPEPAFQRSASTAGDIACAFRPVKSVKMAAPVKPPATRPKPTVF 1046

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>CPO_DROME (Q01617) Protein couch potato|
          Length = 738

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 15  RPSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPP 152
           RP+L P  PAS PQ + P+P    +       A+S+ P+ +P P P
Sbjct: 93  RPTL-PQTPASAPQVLSPSPKRQCA------AAVSVLPVTVPVPVP 131

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>PTN23_RAT (O88902) Tyrosine-protein phosphatase non-receptor type 23 (EC|
           3.1.3.48) (His-domain-containing protein tyrosine
           phosphatase) (HD-PTP) (Protein tyrosine phosphatase
           TD14) (PTP-TD14) (Fragment)
          Length = 1499

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 30  PSRPASKPQPIGPTPSSSRSDFTAGELAMSIRP 128
           P      PQPI   PS+    F+  ELAM +RP
Sbjct: 671 PYAGVGPPQPIVGLPSAPPPQFSGPELAMDVRP 703

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>TXLNB_CHICK (Q9I969) Beta-taxilin (Muscle-derived protein 77)|
          Length = 676

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = +3

Query: 18  PSLIPSRPASKPQ-------PIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPD 155
           P ++P+ P S P        P+G  P+S++S   A E    I  L++P+ P +
Sbjct: 613 PKIMPATPESVPTLMQNTSAPLGNMPASTKSTPKAVEHVDDIAELFIPDQPAE 665

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>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 30   PSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAPE 173
            P  P  +P P  P P ++ S   AG+ A+       P+P P V   P+
Sbjct: 2480 PPPPPQQPPPPVPQPQAASSQTPAGQPAVQ------PQPQPQVQAQPQ 2521

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>KCNH4_HUMAN (Q9UQ05) Potassium voltage-gated channel subfamily H member 4|
            (Voltage-gated potassium channel subunit Kv12.3)
            (Ether-a-go-go-like potassium channel 1) (ELK channel 1)
            (ELK1) (Brain-specific eag-like channel 2) (BEC2)
          Length = 1017

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 15   RPSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIR 125
            RPS++P  P S+P P+GP+P    S  T   L  S +
Sbjct: 975  RPSILPPYP-SEPDPLGPSPVPEASPPTPSLLRHSFQ 1010

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>IRX5_MOUSE (Q9JKQ4) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2)
          Length = 484

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 30  PSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAPEIF 179
           P  PAS P P GP PS+      +G  ++   P   P PPP V   P+++
Sbjct: 288 PHYPASVPAP-GPHPSAGELPPGSGGSSVIHSPPPPPPPPPAVLAKPKLW 336

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>FENR2_TOBAC (O04397) Ferredoxin--NADP reductase, root-type isozyme, chloroplast|
           precursor (EC 1.18.1.2) (FNR)
          Length = 375

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 57  PIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAP 170
           P+    S  RS F A  +  S R  W+  PP D+  AP
Sbjct: 14  PLQTDSSFRRSTFKATSITFSDRSSWISMPPIDLKAAP 51

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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +3

Query: 3    TKSHRPSLIPSR----PASKPQPIGPTPSSSRSDFTAGELAMSIRPL-WLPEPPPD 155
            T S   S +P      P S PQ + P PSSS        ++    P    PEPPP+
Sbjct: 2868 TPSEHKSFVPDTGTLTPTSSPQGVKPAPSSSSLYMVTSFVSAPPDPQPPAPEPPPE 2923

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>VRP1_YEAST (P37370) Verprolin|
          Length = 817

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 21  SLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLW-LPEPPP 152
           S+ P++ +S P P  P P    +  T+  L+ S  PL  LP PPP
Sbjct: 386 SVPPNKASSMPAPPPPPPPPPGAFSTSSALSASSIPLAPLPPPPP 430

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>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1280

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 36  RPASKPQPIGPTPSSSRSDFTAGE 107
           RP SKP P+ P P++ R++ T  E
Sbjct: 915 RPPSKPPPVEPWPAALRAEITDAE 938

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>FBN1_MOUSE (Q61554) Fibrillin-1 precursor|
          Length = 2871

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPD 155
           P +IP RP   P PIGP P         G     + P  +P PPP+
Sbjct: 392 PLVIPGRPEYPPPPIGPLPPV--QPVPPGYPPGPVIP--VPRPPPE 433

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>FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)|
          Length = 2871

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTP 74
           P +IP RP   P P+GP P
Sbjct: 392 PMVIPERPGYPPPPLGPVP 410

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>HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 6   KSHRPSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDV 158
           K  R + +P  P+ +   I   P S+RS     E      PL +P PPPD+
Sbjct: 393 KWFRDNAVPGAPSFQDPAIPTPPPSTRSLNERAETP----PLPIPPPPPDI 439

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>GBX2_MOUSE (P48031) Homeobox protein GBX-2 (Gastrulation and brain-specific|
           homeobox protein 2) (Homeobox protein STRA7)
          Length = 348

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  PTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAPE 173
           P PS     +T   + M  RP+ LP PPP     P+
Sbjct: 32  PQPSPGHFVYTGYPMFMPYRPVVLPPPPPPPPALPQ 67

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>GBX2_HUMAN (P52951) Homeobox protein GBX-2 (Gastrulation and brain-specific|
           homeobox protein 2)
          Length = 348

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 66  PTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAPE 173
           P PS     +T   + M  RP+ LP PPP     P+
Sbjct: 32  PQPSPGHFVYTGYPMFMPYRPVVLPPPPPPPPALPQ 67

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>TDRD6_MOUSE (P61407) Tudor domain-containing protein 6|
          Length = 2134

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = -2

Query: 121  IDMASSPAVKSEREELGVG----PMGCGLEAG 38
            I++  SPA + E+EELG+G    P+  G +AG
Sbjct: 1858 IELQHSPAGEEEKEELGLGSPMAPLSPGCQAG 1889

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>STRC_MOUSE (Q8VIM6) Stereocilin precursor|
          Length = 1809

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 63  GPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAP 170
           GP P  S S+F+   L   I+P   P PPP   R P
Sbjct: 355 GPEPPYSISNFSIYLLCQHIKPA-TPRPPPTTPRPP 389

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>CB017_HUMAN (Q8NC44) Protein C2orf17|
          Length = 543

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTPSSSRS----DF---TAGELAMSIRPLWL-PEPPPDVDRAPE 173
           PS++P  P   PQP+ P P    +    DF     GEL      L L PE PP    AP 
Sbjct: 464 PSILPPVPQDSPQPL-PAPEEEEALTTEDFELLDQGELEQLNAELGLEPETPPKPPDAPP 522

Query: 174 I 176
           +
Sbjct: 523 L 523

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>MMP21_HUMAN (Q8N119) Matrix metalloproteinase-21 precursor (EC 3.4.24.-)|
           (MMP-21)
          Length = 569

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPD 155
           P + P  P++ P P GP P +         L++S R  W P   PD
Sbjct: 120 PDMRPPPPSAPPSPPGPPPRARSRRSPRAPLSLSRRG-WQPRGYPD 164

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>VE4_HPV05 (P06924) Probable protein E4|
          Length = 245

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 18  PSLIPSR-PASKPQPIGPTPS-SSRSDFTAGELAMSIRPLWLPEPPPD 155
           P L P R P+ KP P+GP P    R     G L     P   P+PP +
Sbjct: 87  PGLGPGRGPSPKPTPLGPPPGPGPRRSPRLGPLQADRDPEEGPQPPAE 134

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>SPY4_MOUSE (Q9WTP2) Sprouty homolog 4 (Spry-4)|
          Length = 300

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRP 128
           P+  P RP   P  + PTP+    D T   ++ S RP
Sbjct: 61  PATGPKRPRGGPPELAPTPARCDQDITHHWISFSGRP 97

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>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4)
          Length = 1217

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +3

Query: 6   KSHRPSLIPSRPASKPQPIGPTPSSSR--SDFTAGELAMSIRPLWLPEPPPDV--DRAPE 173
           K   P+  P     +P+P  PTPS  R     TA   A S      P+PP D   DR PE
Sbjct: 646 KPEVPAPTPQAAVPRPKPPVPTPSEKRKHKSSTAPSKAPS-----APQPPKDSAGDRNPE 700

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>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)|
          Length = 1430

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
 Frame = +3

Query: 27   IPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPL-------WLPEPPPDVDRAP 170
            +  RP +K   IGP P    S +  G   +  RP         LP PPP  +  P
Sbjct: 1149 VKRRPKAKEPDIGPEPPPPLSVYQNGTATIRRRPASEQAGPPELPPPPPPAEPPP 1203

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>FBN1_HUMAN (P35555) Fibrillin-1 precursor|
          Length = 2871

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 18  PSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAP 170
           P +IP RP   P P+GP P             + + P + P P   V R P
Sbjct: 392 PMVIPGRPEYPPPPLGPIPP-----------VLPVPPGFPPGPQIPVPRPP 431

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 9   SHRPSLIPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPP 152
           S +P+    RPA++P P GP P  ++     G    + RP   P P P
Sbjct: 184 SSQPAPERERPAARPGPGGPRPGPAQGGPRPGPGQGAPRPGATPGPRP 231

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>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  PSLIPSRPASK--PQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDRAPE 173
           PS  P  PA    P P  PTPS S S   +   + S  P   P P P    +P+
Sbjct: 323 PSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPSPSPSPSPSPSPSPIPSPSPK 376

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>VSX1_BOVIN (Q9GMA3) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 365

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 121 IDMASSPAVKSEREELGVGPMGCGLEAGREGISEGR 14
           ID++SS   +++R + GVG  G     G EG+  G+
Sbjct: 326 IDLSSSTRQETDRAQQGVGAQGRPDSEGLEGLQPGK 361

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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 27  IPSRPASKPQPIGPTP 74
           +PSRP + P P GP P
Sbjct: 815 VPSRPGASPDPFGPPP 830

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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 27  IPSRPASKPQPIGPTP 74
           +PSRP + P P GP P
Sbjct: 815 VPSRPGASPDPFGPPP 830

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>ZIPA_ECOL6 (Q8FFC0) Cell division protein zipA homolog|
          Length = 332

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 42  ASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPPPDVDR 164
           AS PQP+   P  ++  F   E   + +P  + EP P +D+
Sbjct: 151 ASAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDK 191

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>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 96   TAGELAMSIRPLWLPEPPPDVDRAPEI 176
            TAG      +PLW  E PPD   AP I
Sbjct: 4129 TAGCAHSVPQPLWTEEAPPDTQMAPTI 4155

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>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 57   PIGPTPSSSRSDFTAGELAMSIRPLWLPEPPP 152
            P+   PS SR  F +  L +S +P   P PPP
Sbjct: 2328 PVSTHPSKSRPFFRSSSLDISAQPPPPPPPPP 2359

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>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2|
           (ALL1-related protein)
          Length = 5262

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 30  PSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLP-EPPPDVDR 164
           P  P  +  P+ P P +SR      +  MS  P   P  PPP+V R
Sbjct: 607 PLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSR 652

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>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin|
           repeat domain-containing protein 14)
          Length = 871

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 24  LIPSRPASKPQPIGPTPSSSRSDFTA 101
           L+  +P+ +  P+GP P SS S+  A
Sbjct: 678 LLEQKPSHRSSPVGPAPGSSPSELPA 703

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>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48)
          Length = 1692

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
 Frame = +3

Query: 33   SRPASKPQP------IGPTPSSSRSDFTAGELAMSIRPLWLPEPPP 152
            S+P  +PQP       GP P+     F    L  S  P  LP PPP
Sbjct: 1007 SQPQPQPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQAPGILPPPPP 1052

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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 27  IPSRPASKPQPIGPTP 74
           +PSRP + P P GP P
Sbjct: 815 VPSRPGASPDPFGPPP 830

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>AMEL_PIG (P45561) Amelogenin precursor (Amelogenin 173A/173B) (Leucine-rich|
           amelogenin peptide) (LRAP)
          Length = 189

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   TKSHRPSL-IPSRPASKPQPIGPTPSSSRSDFTAGELAMSIRPLWLPEPP 149
           T+ H+P+L +P++   +PQP+ P P               I+PL LP+PP
Sbjct: 113 TQHHQPNLPLPAQQPFQPQPVQPQP---HQPLQPQSPMHPIQPL-LPQPP 158

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>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 6   KSHRPSLIPSRPASKPQPIGPTPSSSRSDF 95
           ++H  SL+ SRP+  PQP+  TP  S  +F
Sbjct: 669 RAHLESLVASRPS--PQPLAETPIPSLPEF 696


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,630,538
Number of Sequences: 219361
Number of extensions: 535022
Number of successful extensions: 2852
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2834
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result