ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472412.1| Oryza sativa (japonica cultivar-group), predic... 88 2e-14
2emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4,... 88 2e-14
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
5dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
6dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
7dbj|AK073473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
8gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 42 0.84
9gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 0.84
10emb|AL133297.1| Human DNA sequence from clone LA16c-425C2 on chr... 42 0.84
11emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 0.84
12emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 0.84
13gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 42 0.84
14gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 0.84
15gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 0.84
16gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 0.84
17gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome... 40 3.3
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.3
19gb|AF005265.1| Oryza sativa importin mRNA, complete cds 40 3.3
20gb|BC053785.1| Xenopus laevis hypothetical protein MGC64360, mRN... 40 3.3
21gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 3.3
22gb|AC106787.2| Homo sapiens chromosome 5 clone RP11-365I6, compl... 40 3.3
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
24dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.3
25gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.3
26dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
27dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.3
28gb|AC003998.1|AC003998 Human PAC clone RP1-161J9 from 5q31, comp... 40 3.3
29dbj|AK099336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
30dbj|AK068233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
31emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 3.3
32gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, comple... 40 3.3
33dbj|AB004814.1| Oryza sativa (japonica cultivar-group) DNA for N... 40 3.3
34dbj|AB004660.1| Oryza sativa mRNA for NLS receptor, complete cds 40 3.3 
>ref|XM_472412.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                       
Query: 198 gtgcgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
           ||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 82  gtgcggcgcgccgtcgtcatcgggaacggctgcgcgggcgccgagaaccagtgcctcggc 141



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 gcgccggagatcttcgcggg 184
           ||||||||||||||||||||
Sbjct: 40  gcgccggagatcttcgcggg 59
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>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13,
             complete sequence
          Length = 113960

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                         
Query: 198   gtgcgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
             ||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 69361 gtgcggcgcgccgtcgtcatcgggaacggctgcgcgggcgccgagaaccagtgcctcggc 69420



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   gcgccggagatcttcgcggg 184
             ||||||||||||||||||||
Sbjct: 69319 gcgccggagatcttcgcggg 69338
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 198      gtgcgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
                ||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 20455941 gtgcggcgcgccgtcgtcatcgggaacggctgcgcgggcgccgagaaccagtgcctcggc 20456000



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 165      gcgccggagatcttcgcggg 184
                ||||||||||||||||||||
Sbjct: 20455899 gcgccggagatcttcgcggg 20455918
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                         
Query: 201      cgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
                |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 19769795 cgccgcgccgtcgtcatcggcaacggctcccccggcgccgagaaccagtgcctcggc 19769851
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>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G07
          Length = 149119

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                      
Query: 201   cgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
             |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 78346 cgccgcgccgtcgtcatcggcaacggctcccccggcgccgagaaccagtgcctcggc 78402
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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1136H02
          Length = 145086

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                       
Query: 201    cgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
              |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 126553 cgccgcgccgtcgtcatcggcaacggctcccccggcgccgagaaccagtgcctcggc 126609
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>dbj|AK073473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045C05, full
           insert sequence
          Length = 2698

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 201 cgccgcgcagtcgtcatcgggaacggctgcccaggcgccgagaaccagtgcctcggc 257
           |||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct: 228 cgccgcgccgtcgtcatcggcaacggctcccccggcgccgagaaccagtgcctcggc 284
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 193    ccgcggtgcgccgcgcagtcg 213
              |||||||||||||||||||||
Sbjct: 139941 ccgcggtgcgccgcgcagtcg 139921
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    cgtcgccgcggtgcgccgcgc 208
              |||||||||||||||||||||
Sbjct: 621416 cgtcgccgcggtgcgccgcgc 621396
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>emb|AL133297.1| Human DNA sequence from clone LA16c-425C2 on chromosome 16 Contains
             gene for KIAA0590 protein, ESTs, STSs, GSSs, complete
             sequence
          Length = 27084

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 112   ccatgtcgattcgcccgctgt 132
             |||||||||||||||||||||
Sbjct: 22947 ccatgtcgattcgcccgctgt 22927
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 188     cgtcgccgcggtgcgccgcgc 208
               |||||||||||||||||||||
Sbjct: 1941144 cgtcgccgcggtgcgccgcgc 1941124
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 141     gagccgccgcccgacgtggatcgggcgccggag 173
               |||||||||||||||||||| | | ||||||||
Sbjct: 2261629 gagccgccgcccgacgtggagccgccgccggag 2261597



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     cggctgcccaggcgccgaga 243
               ||||||||||||||||||||
Sbjct: 3590089 cggctgcccaggcgccgaga 3590070
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>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8
          Length = 279011

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 112    ccatgtcgattcgcccgctgt 132
              |||||||||||||||||||||
Sbjct: 271872 ccatgtcgattcgcccgctgt 271852
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 188    cgtcgccgcggtgcgccgcgc 208
              |||||||||||||||||||||
Sbjct: 574161 cgtcgccgcggtgcgccgcgc 574181
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 188     cgtcgccgcggtgcgccgcgc 208
               |||||||||||||||||||||
Sbjct: 1152026 cgtcgccgcggtgcgccgcgc 1152046
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 141     gagccgccgcccgacgtggatcgggcgccggag 173
               |||||||||||||||||||| | | ||||||||
Sbjct: 2904745 gagccgccgcccgacgtggagccgccgccggag 2904713
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>gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome 3, complete sequence
          Length = 211791

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ccacagcccataggccccac 70
              ||||||||||||||||||||
Sbjct: 192472 ccacagcccataggccccac 192491
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     cggctgcccaggcgccgaga 243
               ||||||||||||||||||||
Sbjct: 3848146 cggctgcccaggcgccgaga 3848127
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>gb|AF005265.1| Oryza sativa importin mRNA, complete cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 97  cagccggcgagctagccatgtcgattcgcccg 128
           |||||||||||| |||||||||| | ||||||
Sbjct: 55  cagccggcgagccagccatgtcgctgcgcccg 86
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>gb|BC053785.1| Xenopus laevis hypothetical protein MGC64360, mRNA (cDNA clone
           MGC:64360 IMAGE:6877868), complete cds
          Length = 1558

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 cgctgtggctgccggagccg 146
           ||||||||||||||||||||
Sbjct: 561 cgctgtggctgccggagccg 580
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 188     cgtcgccgcggtgcgccgcg 207
               ||||||||||||||||||||
Sbjct: 1027755 cgtcgccgcggtgcgccgcg 1027736
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>gb|AC106787.2| Homo sapiens chromosome 5 clone RP11-365I6, complete sequence
          Length = 129667

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     gtcctgcttccaagccacag 56
              ||||||||||||||||||||
Sbjct: 102280 gtcctgcttccaagccacag 102299
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 97      cagccggcgagctagccatgtcgattcgcccg 128
               |||||||||||| |||||||||| | ||||||
Sbjct: 8381264 cagccggcgagccagccatgtcgctgcgcccg 8381295
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     gccggagccgccgcccgacg 156
               ||||||||||||||||||||
Sbjct: 7632820 gccggagccgccgcccgacg 7632801
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 191     cgccgcggtgcgccgcgcag 210
               ||||||||||||||||||||
Sbjct: 3179194 cgccgcggtgcgccgcgcag 3179213
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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 97    cagccggcgagctagccatgtcgattcgcccg 128
             |||||||||||| |||||||||| | ||||||
Sbjct: 45890 cagccggcgagccagccatgtcgctgcgcccg 45921
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     cgccggagatcttcgcgggt 185
               ||||||||||||||||||||
Sbjct: 4891955 cgccggagatcttcgcgggt 4891936
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>gb|AC003998.1|AC003998 Human PAC clone RP1-161J9 from 5q31, complete sequence
          Length = 138965

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    gtcctgcttccaagccacag 56
             ||||||||||||||||||||
Sbjct: 14555 gtcctgcttccaagccacag 14536
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>dbj|AK099336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020P11, full
           insert sequence
          Length = 2104

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 97  cagccggcgagctagccatgtcgattcgcccg 128
           |||||||||||| |||||||||| | ||||||
Sbjct: 112 cagccggcgagccagccatgtcgctgcgcccg 143
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>dbj|AK068233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149A11, full
           insert sequence
          Length = 2143

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 97  cagccggcgagctagccatgtcgattcgcccg 128
           |||||||||||| |||||||||| | ||||||
Sbjct: 151 cagccggcgagccagccatgtcgctgcgcccg 182
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     tcgcccgctgtggctgccgg 141
               ||||||||||||||||||||
Sbjct: 1803772 tcgcccgctgtggctgccgg 1803791
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>gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, complete sequence
          Length = 162787

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ccacagcccataggccccac 70
             ||||||||||||||||||||
Sbjct: 32104 ccacagcccataggccccac 32123
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>dbj|AB004814.1| Oryza sativa (japonica cultivar-group) DNA for NLS receptor, complete
            cds
          Length = 6530

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 97   cagccggcgagctagccatgtcgattcgcccg 128
            |||||||||||| |||||||||| | ||||||
Sbjct: 1563 cagccggcgagccagccatgtcgctgcgcccg 1594
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>dbj|AB004660.1| Oryza sativa mRNA for NLS receptor, complete cds
          Length = 2090

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 97  cagccggcgagctagccatgtcgattcgcccg 128
           |||||||||||| |||||||||| | ||||||
Sbjct: 89  cagccggcgagccagccatgtcgctgcgcccg 120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,532,134
Number of Sequences: 3902068
Number of extensions: 1532134
Number of successful extensions: 30662
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29493
Number of HSP's gapped (non-prelim): 1169
length of query: 257
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 235
effective length of database: 17,147,199,772
effective search space: 4029591946420
effective search space used: 4029591946420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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