Clone Information

BLAST Search Result

Clone Name	bart50d03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	FABI_BRANA (P80030) Enoyl-[acyl-carrier-protein] reductase [NADH...	79	7e-15
2	ADAM2_MACFA (Q28478) ADAM 2 precursor (A disintegrin and metallo...	33	0.46
3	GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (...	32	0.61
4	APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)	32	0.61
5	Y4GJ_RHISN (P55466) Hypothetical 21.1 kDa protein y4gJ	31	1.3
6	FOXE3_MOUSE (Q9QY14) Forkhead box protein E3	31	1.3
7	ZN692_MOUSE (Q3U381) Zinc finger protein 692	31	1.8
8	RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6....	31	1.8
9	RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6....	31	1.8
10	MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich...	30	2.3
11	EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)	30	2.3
12	PKP3_MOUSE (Q9QY23) Plakophilin-3	30	3.0
13	DOIS_STRKN (Q6L738) 2-deoxy-scyllo-inosose synthase (EC 4.2.3.-)...	30	3.0
14	PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-...	30	3.0
15	PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subu...	30	3.0
16	CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain...	30	3.0
17	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	30	3.9
18	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	3.9
19	EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)	30	3.9
20	DCMC_MOUSE (Q99J39) Malonyl-CoA decarboxylase, mitochondrial pre...	30	3.9
21	LEXA_VIBCH (Q9KVP9) LexA repressor (EC 3.4.21.88)	29	5.1
22	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	29	5.1
23	STELO_DROME (Q9NIV2) Stellate orphon protein at 12D	29	5.1
24	MYF6_CHICK (Q01795) Myogenic factor 6 (Myf-6) (Muscle-specific r...	29	5.1
25	RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) ...	29	5.1
26	KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)	29	5.1
27	GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123	29	6.7
28	CS021_PONPY (Q5RBH3) Protein C19orf21 homolog	29	6.7
29	COX2_BACPF (Q04441) Cytochrome c oxidase subunit 2 precursor (EC...	29	6.7
30	TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpre...	29	6.7
31	IF2_SYMTH (Q67P86) Translation initiation factor IF-2	29	6.7
32	ELK1_HUMAN (P19419) ETS domain-containing protein Elk-1	29	6.7
33	CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta...	29	6.7
34	EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)	29	6.7
35	RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein	29	6.7
36	PCDA4_PANTR (Q5DRE8) Protocadherin alpha 4 precursor (PCDH-alpha4)	29	6.7
37	TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47	29	6.7
38	YDT4_SCHPO (O14209) Hypothetical aminotransferase C6B12.04c (EC ...	28	8.7
39	MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia p...	28	8.7
40	CT175_HUMAN (Q96MK2) Protein C20orf175	28	8.7
41	WRK53_ARATH (Q9SUP6) Probable WRKY transcription factor 53 (WRKY...	28	8.7
42	CINA_DEIRA (O32508) CinA-like protein	28	8.7
43	ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot...	28	8.7
44	ZYX_CHICK (Q04584) Zyxin	28	8.7
45	CYLN2_HUMAN (Q9UDT6) Cytoplasmic linker protein 2 (Cytoplasmic l...	28	8.7
46	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	28	8.7
47	ITA4_DROME (Q9V7A4) Integrin alpha-PS4 precursor (Position-speci...	28	8.7

>FABI_BRANA (P80030) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplast|
           precursor (EC 1.3.1.9) (NADH-dependent enoyl-ACP
           reductase)
          Length = 385

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 53/126 (42%), Positives = 63/126 (50%), Gaps = 14/126 (11%)
 Frame = +1

Query: 127 APCATAGAQMLAARPCVSASQSMLTSRAAVLRINLALGAGSFASCPRIS---CSRSLG-- 291
           A  A +  QM   RP +SA+ S   +R  V+  N    A   A  P +S   C R+    
Sbjct: 3   ATAAASSLQMATTRPSISAASSK--ARTYVVGAN-PRNAYKIACTPHLSNLGCLRNDSAL 59

Query: 292 ---------SCVAVRAVSGEGSSSGLPIDLRGKRAFIAGVADDNGYGWXXXXXXXXXXXE 444
                    S  A+   S   +SSGLPIDLRGKRAFIAG+ADDNGYGW           E
Sbjct: 60  PASKKSFSFSTKAMSESSESKASSGLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAE 119

Query: 445 ILVGTW 462
           ILVGTW
Sbjct: 120 ILVGTW 125

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>ADAM2_MACFA (Q28478) ADAM 2 precursor (A disintegrin and metalloproteinase|
           domain 2) (Fertilin beta subunit) (PH-30) (PH30)
           (PH30-beta)
          Length = 735

 Score = 32.7 bits (73), Expect = 0.46
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 20  CAHQQRAHPLCSPTQIPPS-RIPSSPEAGGSC*HGRWPLV----QLPARRCWPHAPASRP 184
           C +++  H  CS + +PP   + S    GGS   G +PLV    +LP RR   +   S+P
Sbjct: 627 CNNKKHCH--CSASYLPPDCSVQSDTSPGGSIDSGNFPLVAVPARLPERRHMENVYHSKP 684

Query: 185 LR 190
           +R
Sbjct: 685 MR 686

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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +2

Query: 44  PLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPARRCWPHAPASRPLRVCSPRGRPSCG 223
           P+C PT  PP   P SPEA     H   P V+    +C+P         +  P G PS  
Sbjct: 103 PIC-PTTTPPPPPPPSPEA-----HVPPPYVEPTTTQCFP---------ILHPPGAPSAH 147

Query: 224 STWR-SALVASRAVPGSPALG 283
             W+   L A +    S ALG
Sbjct: 148 RPWQMKDLQAIKQEVSSSALG 168

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>APC_HUMAN (P25054) Adenomatous polyposis coli protein (Protein APC)|
          Length = 2843

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +1

Query: 13   TLLRSSTARASPVLPHPDPSL-THSVFSRGWW*LLARTMAPCATAGAQMLAARPCVSASQ 189
            T  ++ T   SP LP  D SL THS    G W  L   ++P         A R  ++ S 
Sbjct: 2475 TRSQAQTPVLSPSLP--DMSLSTHSSVQAGGWRKLPPNLSPTIEYNDGRPAKRHDIARSH 2532

Query: 190  SMLTSRAAVLRINLALGAGS--FASCPRISCSRSLGSCVAVRAVSGEGS 330
            S   SR  + R        S   +S PR+S  R  GS  ++ + S E S
Sbjct: 2533 SESPSRLPINRSGTWKREHSKHSSSLPRVSTWRRTGSSSSILSASSESS 2581



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 25/90 (27%), Positives = 35/90 (38%)
 Frame = -2

Query: 441  SPSCGKSLCNCPAIAVIISNPSNKCSFPSKIDGQPRRATFS*HRSYGDTRTKRPRAGDPG 262
            S S G+++ + P +     N S+  S  SK  G P +   S   S G T T  PR   P 
Sbjct: 2223 SISRGRTMIHIPGVR----NSSSSTSPVSK-KGPPLKTPASKSPSEGQTATTSPRGAKPS 2277

Query: 261  TAREATSAERQVDPQDGRPRGEHTLRGRDA 172
               E +   RQ     G  +       RD+
Sbjct: 2278 VKSELSPVARQTSQIGGSSKAPSRSGSRDS 2307

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>Y4GJ_RHISN (P55466) Hypothetical 21.1 kDa protein y4gJ|
          Length = 192

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 143 PARRCWPHAPASRPL-----RVCSPRGRPSCGSTWRSALVASRAVPGSPALGL 286
           P +R   H    RP+     R+C PR +     T  + +   +A+PG+P  GL
Sbjct: 20  PCQRWQIHPALRRPIFRACGRICRPRRKTQIAQTIATLMRRMQAIPGTPGRGL 72

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>FOXE3_MOUSE (Q9QY14) Forkhead box protein E3|
          Length = 288

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 11  PPCCAHQQRAHPLCSPTQIPPSRIPSSPEAG 103
           PPCCA    A P C+    PP   P+S   G
Sbjct: 215 PPCCAAPDAAFPPCAAAASPPLYSPASERLG 245

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>ZN692_MOUSE (Q3U381) Zinc finger protein 692|
          Length = 531

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 2   ESPPPCCAHQQRAHPLCSPTQIPPSRIPSSP 94
           E P    AH  ++HP   P Q PP  + SSP
Sbjct: 457 EKPDSVVAHCSKSHPALLPAQEPPGSLVSSP 487

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>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = -2

Query: 300 DTRTKRPRAGDPGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAGSCT--RG 127
           D   + P +  P T  E T  E Q+D Q  + R E     R+AG  G   RAG+      
Sbjct: 90  DKGDRPPSSEAPATQGEQTPTE-QIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTD 148

Query: 126 HRPC*QLPPASGEDGMREGGIWVGEHRGCARC**AQQGGGD 4
           +R   Q    + E G   GG   G+ +        QQ  GD
Sbjct: 149 NRQGGQQDAKTEERGTDAGGDQGGDQQASG----GQQARGD 185

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>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 602

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = -2

Query: 300 DTRTKRPRAGDPGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAGSCT--RG 127
           D   + P +  P T  E T  E Q+D Q  + R E     R+AG  G   RAG+      
Sbjct: 90  DKGDRPPSSEAPATQGEQTPTE-QIDSQSQQVRPERRSATREAGPSGSGERAGTAADDTD 148

Query: 126 HRPC*QLPPASGEDGMREGGIWVGEHRGCARC**AQQGGGD 4
           +R   Q    + E G   GG   G+ +        QQ  GD
Sbjct: 149 NRQGGQQDAKTEERGTDAGGDQGGDQQASG----GQQARGD 185

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>MCSP_MOUSE (P15265) Sperm mitochondrial-associated cysteine-rich protein|
          Length = 143

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/73 (27%), Positives = 26/73 (35%)
 Frame = +2

Query: 2   ESPPPCCAHQQRAHPLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPARRCWPHAPASR 181
           + PPPCC  +    P C P    P + P  P++   C   + P        C P  P   
Sbjct: 9   QCPPPCCPPK----PCCPPKPCCPQKPPCCPKS--PCCPPKSPCCPPKPCPCPPPCPCPC 62

Query: 182 PLRVCSPRGRPSC 220
           P     P   P C
Sbjct: 63  PATCPCPLKPPCC 75

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>EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 475

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = +1

Query: 127 APCATAGAQMLAARPCVSASQSMLTSRAAVLRINLALGAGSFASCPRISCSRSLGSCVAV 306
           AP A AG    A+    +A+ +   S AA      A  +GS A C  +SC  S  +  A 
Sbjct: 349 APAAAAGLNSAASAAAAAAAAAAAASSAAAAG---APPSGSSAPCSCLSCHSSQSAAAAA 405

Query: 307 RAVSGEGSSSG 339
            A +    S G
Sbjct: 406 AAAAAALGSRG 416

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>PKP3_MOUSE (Q9QY23) Plakophilin-3|
          Length = 797

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +2

Query: 56  PTQIPPSRIPSSPEAGGSC*HGRWPLVQLPARRCWPHAPASRPLRVCSPRGRPSCGSTWR 235
           PT   P+R  S  E GG+     +  + LP+ R  P     R   V S +  P+  ST+R
Sbjct: 153 PTPPMPTRPVSFHERGGAASRADYDTLSLPSLRLGPGGLDDR-YSVVSEQLEPAAASTYR 211

Query: 236 SALVASRAVPGSPALG 283
           +     +A  GS   G
Sbjct: 212 AYAYKRQASSGSSRAG 227

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>DOIS_STRKN (Q6L738) 2-deoxy-scyllo-inosose synthase (EC 4.2.3.-) (DOI|
           synthase) (DOIS)
          Length = 390

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 380 PAINALFPLRSMGSPEE-LPSPDTALTATQEPRDLEQEILGQLAKLPAPSA 231
           PA    +P+  + SP + L S  T LTA   PRDL   ++ +LA+ P P+A
Sbjct: 328 PASADTYPMVLLESPGKVLRSEGTVLTAA--PRDLVDAVVDELAEPPRPAA 376

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>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing|
            protein 2) (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
            (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein
            G3B)
          Length = 1718

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 34/113 (30%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
 Frame = +2

Query: 2    ESPPPCCAHQQRAH-PLCSPTQIPPSRIPSSPEAGGSC---------*HGRWPLVQLPA- 148
            ES P  C        P  S  Q+PP  IP+ P +   C              P V LPA 
Sbjct: 939  ESTPDVCPSSPALQTPSLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAP 998

Query: 149  -RRCWPH--------APASRPLRVCSPRGRPSCGSTWRSALVASRAVPGSPAL 280
                 PH        A A  PL + SP   PS         + S A PG P L
Sbjct: 999  SSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMSAASPGPPTL 1051

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>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like|
           protein ST-
          Length = 1019

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
 Frame = -2

Query: 267 PGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAGSCTRGHRPC*QLPPASG- 91
           PG  R      R   P  GRPR  H             L  GS TR H+   QL P    
Sbjct: 810 PGPGRHEEGGRRHQRPGPGRPRRGHPF-----------LPQGSTTRPHQFSVQLHPLPKL 858

Query: 90  EDGMREGGIWVGEH 49
             G  +GGI V  H
Sbjct: 859 GTGSSDGGIGVSLH 872

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>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 279  RAGDPGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAG-SCTRGHRPC*QLP 103
            RAGDPG    A +   + +P D  P G     G   G  GQ    G    RG R    LP
Sbjct: 872  RAGDPGLQGPAGAPGEKGEPGDDGPSGSDGPPG-PQGLAGQRGIVGLPGQRGERGFPGLP 930

Query: 102  PASGEDGMREGGIWVGEHRG 43
              SGE G ++G       RG
Sbjct: 931  GPSGEPG-KQGAPGASGDRG 949



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = -2

Query: 390 ISNPSNKCSFPSKIDGQPRRATFS*HRSYGDTRTKRPRAGDPGTAREATSAERQVDPQDG 211
           +  P     FP    G P       HR Y      +  AG PG   E+ S      P   
Sbjct: 200 LPGPQGARGFP----GTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPM 255

Query: 210 RPRGEHTLRGR--DAGACG 160
            PRG    RGR   AGA G
Sbjct: 256 GPRGLPGERGRTGPAGAAG 274

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>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 8   PPPCCAHQQRAHPLCSPTQIPPSRIPSSPEAGGS 109
           PPPC + Q RA PL +    PP+   S PEA  +
Sbjct: 570 PPPCPSTQTRA-PLPTEPAFPPAATGSQPEASNA 602

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -2

Query: 285 RPRAGDPGTAREATSAERQVDPQDGR--PRGEHTLRGRDAGAC---GQHLRAGSCTRGHR 121
           RP A  PG AR AT  + Q     G    RG+   RG   GA    GQ  R G+   G R
Sbjct: 154 RPGAPKPGGARPATPGQGQGGQVRGERTDRGDRGDRGDRQGAARPGGQAPRPGARPAGPR 213

Query: 120 PC*QLPPASGEDGM 79
           P      + G  GM
Sbjct: 214 PGNNPFTSGGSTGM 227

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>EPN3_HUMAN (Q9H201) Epsin-3 (EPS-15-interacting protein 3)|
          Length = 632

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 359 PLRSMGSPEEL-----PSPDTALTATQEPRDLEQEILGQLAKLPAPSARLIR 219
           P     SP EL     PSP +    T+EP  L+  ILG+    P+  AR  R
Sbjct: 443 PSGKPSSPVELDLFGDPSPSSKQNGTKEPDALDLGILGEALTQPSKEARACR 494

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>DCMC_MOUSE (Q99J39) Malonyl-CoA decarboxylase, mitochondrial precursor (EC|
           4.1.1.9) (MCD)
          Length = 492

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 143 PARRCWPHAPASRPLRVCSPRGRPSCGSTWRSAL--VASRAVPGSPALGL 286
           P  R     P   P R   PRGR  CG    SA+  +  RAVP +PA  L
Sbjct: 6   PGLRARRLLPLRSPPRPPGPRGRRLCGGLAASAMDELLRRAVPPTPAYEL 55

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>LEXA_VIBCH (Q9KVP9) LexA repressor (EC 3.4.21.88)|
          Length = 209

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 285 RPRAGDPGTAREATSAERQVDPQDGRPRGEHTLR 184
           R  AG+P  A+E   A  QVDP   RP+ +  LR
Sbjct: 88  RVAAGEPILAQEHVEAHYQVDPSMFRPQADFLLR 121

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>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
 Frame = -2

Query: 276 AGDPGTAREATSAERQVDPQ-----DGR-PRGEHTLRGRDAGACGQHLRAGSCTRGHRPC 115
           A +P    E    ER+ D +     D R PRG      R AGA  +  R G   RG RP 
Sbjct: 216 APEPAPVVEPQREERRDDRRGAPSGDNRGPRGNDNRGPRPAGAGDRGPRPGGDNRGPRPA 275

Query: 114 *QLPPASGEDGMREGG 67
                 +G+ G R GG
Sbjct: 276 -----GAGDRGPRPGG 286

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>STELO_DROME (Q9NIV2) Stellate orphon protein at 12D|
          Length = 172

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 244 GSFASCPRISCSRSLGSCVAVRAVSGEGS 330
           G F SCP ISC R     V V AV G+ +
Sbjct: 95  GDFGSCPNISCDRQNTLPVGVSAVWGKST 123

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>MYF6_CHICK (Q01795) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory|
           factor 4)
          Length = 242

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 215 SCGSTWRSALVASRAVPGSPALG 283
           +CGS W SA   SRA+ GSP  G
Sbjct: 182 TCGSDWHSASDHSRALGGSPKAG 204

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>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ|
           protein-like 5) (RecQ5)
          Length = 991

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 359 PLRSMGSPEELPSPDTALTATQEPRDLEQEILGQLAKLPAPSAR 228
           P R  G+PE  P+P       + PR  ++    Q  K P PSA+
Sbjct: 833 PPRDQGTPEVQPTPAKDTWKGKRPRSQQENPESQPQKRPRPSAK 876

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>KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1139

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +2

Query: 11  PPCCAHQQRAHPLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPARRCWPHAPASRPLR 190
           PP    QQ+A P   P Q PP + P  P+ G      ++   Q  A++  P  PA+    
Sbjct: 731 PPQPQQQQQAPPAQMPPQQPPPQQPLPPQPG-----QQYQQQQPAAQKPQPQPPATAQGA 785

Query: 191 VCSPRG 208
              P G
Sbjct: 786 AAGPPG 791

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>GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123|
          Length = 1280

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +2

Query: 26  HQ-QRAHPL-CSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPA--RRCWPHAPASRPLRV 193
           HQ Q AH   C   + P S     P AGG    GRW    + A     +P A   R    
Sbjct: 23  HQAQMAHGAHCRGGRTPQSPDSRGPTAGGHT-RGRWTYRPIEALINVSFPGAKGGR---- 77

Query: 194 CSPRGRPSCGSTWRSALVASRAVPGSP 274
            +  G PS    +RS  +  +A+PG P
Sbjct: 78  -TAEGEPSWAWVFRSGYLQRQALPGLP 103

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>CS021_PONPY (Q5RBH3) Protein C19orf21 homolog|
          Length = 685

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = -2

Query: 264 GTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAGSCTRGHRPC*QLPPASGED 85
           G  R+  S   +  P    PRG H   G D G     L A    +G RP   + P  GED
Sbjct: 60  GVLRQGVSYSVRAYPGQPSPRGLHLETGEDEGLKVYRLGARDAHQG-RPTWAVHPEDGED 118

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>COX2_BACPF (Q04441) Cytochrome c oxidase subunit 2 precursor (EC 1.9.3.1)|
           (Cytochrome c oxidase polypeptide II) (Cytochrome aa3
           subunit 2) (Oxidase aa(3) subunit 2)
          Length = 342

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 292 SCVAVRAVSGEGSSSGLPIDLRGKRAFIAGVADDN 396
           SC+   AV G G+++G      G+R  IAG  ++N
Sbjct: 263 SCIGCHAVGGTGTAAGPAFTNFGEREVIAGYLENN 297

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>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in|
           astrocytoma protein) (RING finger protein 100)
          Length = 638

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 44  PLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPAR 151
           P  +P    PS +PS PE    C    WP  + P R
Sbjct: 93  PALAPEPSAPSALPSVPEPSAPCAPEPWPAGEEPVR 128

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>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
 Frame = -2

Query: 303 GDTRTKRPRAGDP---GTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLR-AGS- 139
           G   + RP +  P   G  R A +AER+ +PQ   P+     R   AG  GQ  R AGS 
Sbjct: 251 GTGASSRPASAAPAAQGEKRPAAAAERREEPQAEAPQTSGPSRPVPAGP-GQPARPAGSG 309

Query: 138 ------CTRGHRPC*QLPPASGE---DGMREGGIWVG 55
                    G +    LP   GE   DG R GG  +G
Sbjct: 310 IGVPVKPAAGGKSGLGLPTRPGEKAADGARGGGSGIG 346

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>ELK1_HUMAN (P19419) ETS domain-containing protein Elk-1|
          Length = 428

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 276 AGDPGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQH 154
           AG+ G   E T AE +V PQ+G P     +    AG  G H
Sbjct: 260 AGERGFVPETTKAEPEVPPQEGVPARLPAVVMDTAGQAGGH 300

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>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1459

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 279  RAGDPGTAREATSAERQVDPQDGRPRGEHTLRGRDAGACGQHLRAG-SCTRGHRPC*QLP 103
            RAGDPG    A +   + +P D  P G     G   G  GQ    G    RG R    LP
Sbjct: 912  RAGDPGLEGPAGAPGEKGEPGDDGPSGLDGPPG-PQGLAGQRGIVGLPGQRGERGFPGLP 970

Query: 102  PASGEDGMREGGIWVGEHRG 43
              SGE G ++G       RG
Sbjct: 971  GPSGEPG-KQGAPGASGDRG 989

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>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 476

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 21/71 (29%), Positives = 29/71 (40%)
 Frame = +1

Query: 127 APCATAGAQMLAARPCVSASQSMLTSRAAVLRINLALGAGSFASCPRISCSRSLGSCVAV 306
           AP A AG    A+    +A+ +   S AA      A  +G  A C  +SC  S  +  A 
Sbjct: 346 APAAAAGLNSAASAAAAAAAAAAAASSAAAAG---APPSGGSAPCSCLSCHSSQSAAAAA 402

Query: 307 RAVSGEGSSSG 339
            A +    S G
Sbjct: 403 AAAAAALGSRG 413

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>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 24/65 (36%), Positives = 25/65 (38%)
 Frame = +2

Query: 89  SPEAGGSC*HGRWPLVQLPARRCWPHAPASRPLRVCSPRGRPSCGSTWRSALVASRAVPG 268
           SPEA   C            R C P  P  RP   C  R   SCGST  S    +R   G
Sbjct: 842 SPEASWLC-----------GRYC-PTPPRGRP---CPQRRSSSCGSTGSSHQSTARGPGG 886

Query: 269 SPALG 283
           SP  G
Sbjct: 887 SPQEG 891

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>PCDA4_PANTR (Q5DRE8) Protocadherin alpha 4 precursor (PCDH-alpha4)|
          Length = 947

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 86  SSPEAGGSC*HGRWPLVQLPARRCWPHAPASRPLRVCSPRGRP 214
           S+P   G+C  G+  LV   A   W ++   RP RVCS  G P
Sbjct: 724 SAPPTEGACAPGKPTLVCSSAVGSWSYSQQRRP-RVCSGEGPP 765

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>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47|
          Length = 641

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
 Frame = +2

Query: 8   PPPCCAHQQRAHPLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPAR-RCWPHAPASRP 184
           P P  A    +    +P    PS  P +PE    C   +WP  + P R    P   A   
Sbjct: 85  PGPMSAPASGSTRGATPEPSAPSAPPPAPEPSAPCAPEQWPAGEEPVRCDACPEGAALPA 144

Query: 185 LRVCSPRGRPSCGSTWRSALVASRAVPGSPALGLLVLVSP*ERCQEKVALLGCP 346
              C      SC +++ SA +A      SPAL    LV P  R +E +    CP
Sbjct: 145 ALSCL-----SCLASFCSAHLAPH--ERSPALRGHRLVPPLRRLEESL----CP 187

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>YDT4_SCHPO (O14209) Hypothetical aminotransferase C6B12.04c (EC 2.6.1.-)|
          Length = 421

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 3   NRRHLAALINSARIPCAPPPRSLPHAFRLL--PRLVV--AASTDDGPLCNCRRADAGRTP 170
           +R  +  L+N A   C  PP SL   F     P+ V+  A  + D   CN      GR  
Sbjct: 15  SRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKKSIDEVACNQYSHTRGRPS 74

Query: 171 LRLGLSE 191
           LR  LSE
Sbjct: 75  LRKALSE 81

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>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog|
            (Histone-lysine N-methyltransferase, H3 lysine-4 specific
            MLL3) (EC 2.1.1.43) (Homologous to ALR protein)
          Length = 4911

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
 Frame = -2

Query: 453  NKNFSPSCGKSLCNCPAIAVIISNPSNKCSFPSKID------------GQPRRATFS*HR 310
            N++  P     L   PA+    ++PS   S P  I             G PR    S  +
Sbjct: 2088 NQSNDPYSQPPLTPHPAVNESFAHPSRAFSQPGTISRPTSQDPYSQPPGTPRPVVDSYSQ 2147

Query: 309  SYGDTRTKR-PRAGDPGTAREATSAERQVDPQDGRP 205
            S G  R+   P +  PGT R  T       PQ  RP
Sbjct: 2148 SSGTARSNTDPYSQPPGTPRPTTVDPYSQQPQTPRP 2183

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>CT175_HUMAN (Q96MK2) Protein C20orf175|
          Length = 593

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 153 DAGRTPLRLGL-SEYAHLEGGRLADQPGAR 239
           +A   PL  GL  E AHL GG  A+QPG R
Sbjct: 441 EAREDPLPPGLLPEMAHLSGGPFAEQPGWR 470

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>WRK53_ARATH (Q9SUP6) Probable WRKY transcription factor 53 (WRKY DNA-binding|
           protein 53)
          Length = 324

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 447 NFSPSCGKSLCNCPAIAVIISNPSNKCSFPSKIDGQPRRATFS 319
           N+S S    L   P   V ++NP +    P+ I+G PR   F+
Sbjct: 72  NWSSSPSVQLIPTPVTVVPVANPGSVPESPASINGSPRSEEFA 114

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>CINA_DEIRA (O32508) CinA-like protein|
          Length = 404

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 272 EILGQLAKLPAPSARLIRKTAALEVSIL*EAETQGRAASICAPAV 138
           EILG+L +   PS     +   ++V +   A+T+  A ++ AP +
Sbjct: 197 EILGELTRQANPSVATYFRKTGVDVRVAASADTEAEARALLAPVL 241

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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
 Frame = +2

Query: 44  PLCSPTQIPPSRIPSSPEAGGSC*HGRWPLVQLPARRCWPHAPASR-PLRVCSPRGRPS 217
           P  SP+  PPSR  S P +             LP R   P  P SR P R   P   PS
Sbjct: 554 PCPSPSSRPPSRYQSGPNS-------------LPPRAATPTRPPSRPPSRPSRPPSHPS 599

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>ZYX_CHICK (Q04584) Zyxin|
          Length = 542

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   SPPPCCAHQQRAHPLCSPTQIPPSRIPSSPEA 100
           +P P  A QQR  PL S    PP  +PS P A
Sbjct: 195 APAPWAAPQQRKEPLASVP--PPPSLPSQPTA 224

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>CYLN2_HUMAN (Q9UDT6) Cytoplasmic linker protein 2 (Cytoplasmic linker protein|
           115) (CLIP-115) (Williams-Beuren syndrome chromosome
           region 4 protein)
          Length = 1046

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 PASRPLRVCSPRGRPSCGSTWRSALVASRAVPGSP 274
           P  R  +  SP GR S GS   SA VA+ +  GSP
Sbjct: 9   PPGRGGKHSSPMGRTSTGSASSSAAVAASSKEGSP 43

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = -2

Query: 327 TFS*HRSYGDTRTKRPRAGD-PGTAREATSAERQ---VDPQDG------RPRGEHTLRGR 178
           T++  RS G   +  PR G+ PG +  A  A+ +      ++G      RP G     G+
Sbjct: 439 TWARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGK 498

Query: 177 DAGACGQHLRAGSCTRGH 124
           D   CG+  R+    + H
Sbjct: 499 DCPFCGKSFRSAHHLKVH 516

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>ITA4_DROME (Q9V7A4) Integrin alpha-PS4 precursor (Position-specific antigen 4|
           alpha chain)
          Length = 1015

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 172 CVSASQSMLTSRAAVLRINLAL-GAGSFASCPRISCSRSLGSCVA 303
           C++AS +++    AVLR+   +   G FA  P+ S + S G  +A
Sbjct: 587 CINASSTLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSLA 631


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,350,358
Number of Sequences: 219361
Number of extensions: 1530537
Number of successful extensions: 6315
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 5879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6310
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result