ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475288.1| Oryza sativa (japonica cultivar-group), predic... 117 2e-23
2gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome... 113 4e-22
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
4ref|XM_475294.1| Oryza sativa (japonica cultivar-group), predic... 105 9e-20
5gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome... 101 1e-18
6ref|XM_475293.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
7ref|XM_475287.1| Oryza sativa (japonica cultivar-group), predic... 62 1e-06
8ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predic... 54 3e-04
9gb|AY022137.1| Oryza sativa microsatellite MRG4462 containing (T... 54 3e-04
10gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 44 0.28
11gb|AE009609.1| Brucella melitensis 16M chromosome I, section 166... 44 0.28
12gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 44 0.28
13emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 44 0.28
14ref|XM_362740.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.1
15gb|AF020803.2|AF020803 Homo sapiens chromosome 21 clone cosmid Q... 42 1.1
16gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clon... 42 1.1
17dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.1
18dbj|BS000198.1| Pan troglodytes chromosome 22 clone:RP43-091A22,... 42 1.1
19emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 ... 42 1.1
20gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 4.4
21gb|AY781336.1| Danio rerio talin 1 (tln1) mRNA, complete cds 40 4.4
22gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 4.4
23ref|XM_843843.1| PREDICTED: Canis familiaris similar to lipocali... 40 4.4
24gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 4.4
25ref|NM_001009560.1| Danio rerio talin 1 (tln1), mRNA 40 4.4
26emb|BX323809.14| Zebrafish DNA sequence from clone DKEY-42J10 in... 40 4.4
27dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.4
28gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 4.4
29gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 4.4
30gb|CP000036.1| Shigella boydii Sb227, complete genome 40 4.4
31gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p... 40 4.4
32gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p... 40 4.4
33gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 4.4
34dbj|AB022645.1| Magnetospirillum magnetotacticum hosA gene for h... 40 4.4

>ref|XM_475288.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 543

 Score =  117 bits (59), Expect = 2e-23
 Identities = 131/155 (84%)
 Strand = Plus / Plus

                                                                       
Query: 129 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 188
           ||||||||||| || || |||||||| |||||||||||  | || ||| ||  | || ||
Sbjct: 127 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 186

                                                                       
Query: 189 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 248
           |  || ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||
Sbjct: 187 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 246

                                              
Query: 249 atcattgccgtcgtctgcgccgtcttctcatggat 283
           ||| | | |||||||||||||||| ||||||||||
Sbjct: 247 atcgtcggcgtcgtctgcgccgtcatctcatggat 281



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                    
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcacta 78
          ||||| ||| ||||||| ||||||||||||||| | ||||||||| | ||||||||||
Sbjct: 40 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcacta 97



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>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
             complete sequence
          Length = 106166

 Score =  113 bits (57), Expect = 4e-22
 Identities = 129/153 (84%)
 Strand = Plus / Plus

                                                                         
Query: 129   gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 188
             ||||||||||| || || |||||||| |||||||||||  | || ||| ||  | || ||
Sbjct: 93937 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 93996

                                                                         
Query: 189   gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 248
             |  || ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||
Sbjct: 93997 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 94056

                                              
Query: 249   atcattgccgtcgtctgcgccgtcttctcatgg 281
             ||| | | |||||||||||||||| ||||||||
Sbjct: 94057 atcgtcggcgtcgtctgcgccgtcatctcatgg 94089



 Score =  101 bits (51), Expect = 1e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                         
Query: 195   ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
             |||||||||||||| |  |||||||||||||||||||| ||||||||||| |||||| | 
Sbjct: 85836 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 85895

                                    
Query: 255   gccgtcgtctgcgccgtcttctc 277
             | |||||||||||||||||||||
Sbjct: 85896 ggcgtcgtctgcgccgtcttctc 85918



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                         
Query: 195   ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
             |||||||||||||| |  ||||||||||| ||| |||| ||||||||||| |||||| | 
Sbjct: 82711 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 82770

                            
Query: 255   gccgtcgtctgcgcc 269
             | |||||| ||||||
Sbjct: 82771 ggcgtcgtgtgcgcc 82785



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 21    tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
             ||||| ||| ||||||| ||||||||||||||| | ||||||||| | |||||||||
Sbjct: 93473 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 93529



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 9     tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
             ||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 82394 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 82448



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                    
Query: 10    cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 64
             |||| ||||| ||||||||| |||| || ||||||||||| ||| | ||||||||
Sbjct: 85521 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 85575



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 4e-22
 Identities = 129/153 (84%)
 Strand = Plus / Plus

                                                                            
Query: 129      gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 188
                ||||||||||| || || |||||||| |||||||||||  | || ||| ||  | || ||
Sbjct: 21115072 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 21115131

                                                                            
Query: 189      gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 248
                |  || ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||
Sbjct: 21115132 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 21115191

                                                 
Query: 249      atcattgccgtcgtctgcgccgtcttctcatgg 281
                ||| | | |||||||||||||||| ||||||||
Sbjct: 21115192 atcgtcggcgtcgtctgcgccgtcatctcatgg 21115224



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                            
Query: 195      ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
                ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||| | 
Sbjct: 21162206 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21162265

                                           
Query: 255      gccgtcgtctgcgccgtcttctcatgg 281
                | | |||||||||||||| ||||||||
Sbjct: 21162266 ggcatcgtctgcgccgtcgtctcatgg 21162292



 Score =  101 bits (51), Expect = 1e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                            
Query: 195      ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
                |||||||||||||| |  |||||||||||||||||||| ||||||||||| |||||| | 
Sbjct: 21106971 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21107030

                                       
Query: 255      gccgtcgtctgcgccgtcttctc 277
                | |||||||||||||||||||||
Sbjct: 21107031 ggcgtcgtctgcgccgtcttctc 21107053



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 140/175 (80%)
 Strand = Plus / Plus

                                                                            
Query: 107      gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 166
                |||| ||||||| || |||||||||  || ||| ||||| ||||||||  |||||||| |
Sbjct: 21156451 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 21156510

                                                                            
Query: 167      cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 226
                  |||| ||||||  | || |||  || ||||||||||||||||  |||||||||||  |
Sbjct: 21156511 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 21156570

                                                                       
Query: 227      catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
                |||||| || |||||||| ||||| || | |||| ||||||| ||| | ||||||
Sbjct: 21156571 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 21156625



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                              
Query: 22       cccttggggtgctgagtgccatcctggggttctcagccgagggcac 67
                |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 21161894 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 21161939



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                         
Query: 21       tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
                ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 21156252 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 21156308



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                            
Query: 195      ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
                |||||||||||||| |  ||||||||||| ||| |||| ||||||||||| |||||| | 
Sbjct: 21103846 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 21103905

                               
Query: 255      gccgtcgtctgcgcc 269
                | |||||| ||||||
Sbjct: 21103906 ggcgtcgtgtgcgcc 21103920



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 21       tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
                ||||| ||| ||||||| ||||||||||||||| | ||||||||| | |||||||||
Sbjct: 21114608 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 21114664



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 226      ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
                ||||||| || |||||||| |||||||| | |||||||||||||||| | ||||||
Sbjct: 21151077 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 21151132



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 21       tcccttggggtgctgagtgccatcctggggttctcagccgagg 63
                ||||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 21150752 tccctggggttgctgagcgccatcctggggttctccgccgagg 21150794



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 9        tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
                ||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 21103529 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 21103583



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                       
Query: 10       cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 64
                |||| ||||| ||||||||| |||| || ||||||||||| ||| | ||||||||
Sbjct: 21106656 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 21106710



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>ref|XM_475294.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 738

 Score =  105 bits (53), Expect = 9e-20
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                       
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
           ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||| | 
Sbjct: 214 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 273

                                        
Query: 255 gccgtcgtctgcgccgtcttctcatggat 283
           | | |||||||||||||| ||||||||||
Sbjct: 274 ggcatcgtctgcgccgtcgtctcatggat 302



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 22  cccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcactattt 81
           |||| ||||||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||
Sbjct: 41  ccctgggggtgctgagcgccatcctggggttctccgccgagggcacaaagatcattattt 100

                
Query: 82  cggac 86
           |||||
Sbjct: 101 cggac 105



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>gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0088F07, complete sequence
          Length = 139180

 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Plus

                                                                         
Query: 195   ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
             ||||||||||||||||  |||||||||||||||||||| ||||||||||| |||||| | 
Sbjct: 42989 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 43048

                                        
Query: 255   gccgtcgtctgcgccgtcttctcatgg 281
             | | |||||||||||||| ||||||||
Sbjct: 43049 ggcatcgtctgcgccgtcgtctcatgg 43075



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 140/175 (80%)
 Strand = Plus / Plus

                                                                         
Query: 107   gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 166
             |||| ||||||| || |||||||||  || ||| ||||| ||||||||  |||||||| |
Sbjct: 37234 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 37293

                                                                         
Query: 167   cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 226
               |||| ||||||  | || |||  || ||||||||||||||||  |||||||||||  |
Sbjct: 37294 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 37353

                                                                    
Query: 227   catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
             |||||| || |||||||| ||||| || | |||| ||||||| ||| | ||||||
Sbjct: 37354 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 37408



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Plus

                                                           
Query: 22    cccttggggtgctgagtgccatcctggggttctcagccgagggcac 67
             |||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 42677 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 42722



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                      
Query: 21    tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
             ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 37035 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 37091



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 226   ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
             ||||||| || |||||||| |||||||| | |||||||||||||||| | ||||||
Sbjct: 31860 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 31915



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 21    tcccttggggtgctgagtgccatcctggggttctcagccgagg 63
             ||||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 31535 tccctggggttgctgagcgccatcctggggttctccgccgagg 31577



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>ref|XM_475293.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 543

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 142/177 (80%)
 Strand = Plus / Plus

                                                                       
Query: 107 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 166
           |||| ||||||| || |||||||||  || ||| ||||| ||||||||  |||||||| |
Sbjct: 123 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 182

                                                                       
Query: 167 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 226
             |||| ||||||  | || |||  || ||||||||||||||||  |||||||||||  |
Sbjct: 183 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 242

                                                                    
Query: 227 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatggat 283
           |||||| || |||||||| ||||| || | |||| ||||||| ||| | ||||||||
Sbjct: 243 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatggat 299



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                   
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
          ||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 40 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 96



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>ref|XM_475287.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 771

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
           |||||||||||||| |  ||||||||||| ||| |||| ||||||||||| |||||| | 
Sbjct: 259 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 318

                          
Query: 255 gccgtcgtctgcgcc 269
           | |||||| ||||||
Sbjct: 319 ggcgtcgtgtgcgcc 333



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 9   tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
           ||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 112 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 166



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>ref|XM_475286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 621

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 12  gtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaag 71
           ||||| || ||||| ||| ||||||| ||||| ||||| ||| | |||||| |||| |||
Sbjct: 31  gtcgtcgggtccctggggttgctgagcgccattctgggattcgccgccgagagcacaaag 90

                          
Query: 72  ctcactatttcggac 86
            ||||||||||||||
Sbjct: 91  atcactatttcggac 105



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>gb|AY022137.1| Oryza sativa microsatellite MRG4462 containing (TC)X19, closest
          to marker S1736, genomic sequence
          Length = 238

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                 
Query: 9  tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
          ||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 1  tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 55



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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 189    gttgttggcggctgctgcggct 210
              ||||||||||||||||||||||
Sbjct: 198139 gttgttggcggctgctgcggct 198160



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>gb|AE009609.1| Brucella melitensis 16M chromosome I, section 166 of 195 of the
            complete sequence
          Length = 10580

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 189  gttgttggcggctgctgcggct 210
            ||||||||||||||||||||||
Sbjct: 9519 gttgttggcggctgctgcggct 9498



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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 189    gttgttggcggctgctgcggct 210
              ||||||||||||||||||||||
Sbjct: 199502 gttgttggcggctgctgcggct 199523



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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
              strain 2308
          Length = 2121359

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 189    gttgttggcggctgctgcggct 210
              ||||||||||||||||||||||
Sbjct: 195869 gttgttggcggctgctgcggct 195890



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>ref|XM_362740.1| Magnaporthe grisea 70-15 hypothetical protein (MG08308.4) partial
           mRNA
          Length = 846

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 189 gttgttggcggctgctgcggc 209
           |||||||||||||||||||||
Sbjct: 567 gttgttggcggctgctgcggc 547



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>gb|AF020803.2|AF020803 Homo sapiens chromosome 21 clone cosmid Q37D2 map 21q22.2, complete
            sequence
          Length = 45034

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 31   tgctgagtgccatcctggggt 51
            |||||||||||||||||||||
Sbjct: 9740 tgctgagtgccatcctggggt 9720



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>gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clone P169K17 map 21q22.2, complete
              sequence
          Length = 179544

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     tgctgagtgccatcctggggt 51
              |||||||||||||||||||||
Sbjct: 154779 tgctgagtgccatcctggggt 154759



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>dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, section 68/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    tgctgagtgccatcctggggt 51
             |||||||||||||||||||||
Sbjct: 28580 tgctgagtgccatcctggggt 28560



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>dbj|BS000198.1| Pan troglodytes chromosome 22 clone:RP43-091A22, map 22, complete
              sequences
          Length = 181880

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     tgctgagtgccatcctggggt 51
              |||||||||||||||||||||
Sbjct: 130016 tgctgagtgccatcctggggt 129996



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>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22;
              segment 1/3
          Length = 323000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     tgctgagtgccatcctggggt 51
              |||||||||||||||||||||
Sbjct: 154447 tgctgagtgccatcctggggt 154467



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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     tcgcgctgctggtgtccggc 321
               ||||||||||||||||||||
Sbjct: 3199190 tcgcgctgctggtgtccggc 3199171



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>gb|AY781336.1| Danio rerio talin 1 (tln1) mRNA, complete cds
          Length = 7938

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  tggcggctgctgcggcttgt 213
            ||||||||||||||||||||
Sbjct: 2917 tggcggctgctgcggcttgt 2898



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    tcggggtgtgcgcggcgatc 158
              ||||||||||||||||||||
Sbjct: 806146 tcggggtgtgcgcggcgatc 806165



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>ref|XM_843843.1| PREDICTED: Canis familiaris similar to lipocalin 8 (LOC607230),
          mRNA
          Length = 643

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 26 tggggtgctgagtgccatcctggg 49
          |||| |||||||||||||||||||
Sbjct: 69 tgggctgctgagtgccatcctggg 92



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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    tcgcgctgctggtgtccggc 321
              ||||||||||||||||||||
Sbjct: 239374 tcgcgctgctggtgtccggc 239355



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>ref|NM_001009560.1| Danio rerio talin 1 (tln1), mRNA
          Length = 7938

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  tggcggctgctgcggcttgt 213
            ||||||||||||||||||||
Sbjct: 2917 tggcggctgctgcggcttgt 2898



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>emb|BX323809.14| Zebrafish DNA sequence from clone DKEY-42J10 in linkage group 10,
              complete sequence
          Length = 194108

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    tggcggctgctgcggcttgt 213
              ||||||||||||||||||||
Sbjct: 146672 tggcggctgctgcggcttgt 146653



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     gctcggggtgtgcgcggcga 156
               ||||||||||||||||||||
Sbjct: 7016173 gctcggggtgtgcgcggcga 7016154



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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     tcgcgctgctggtgtccggc 321
               ||||||||||||||||||||
Sbjct: 3187853 tcgcgctgctggtgtccggc 3187834



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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 190     ttgttggcggctgctgcggc 209
               ||||||||||||||||||||
Sbjct: 4342610 ttgttggcggctgctgcggc 4342629



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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     tcgcgctgctggtgtccggc 321
               ||||||||||||||||||||
Sbjct: 2925344 tcgcgctgctggtgtccggc 2925325



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>gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p, complete sequence
          Length = 184065

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 105    gtgtgcgtgtacccagataacccc 128
              ||||||||||| ||||||||||||
Sbjct: 177483 gtgtgcgtgtagccagataacccc 177506



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>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence
          Length = 151927

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    gtgtgcgtgtacccagataacccc 128
              ||||||||||| ||||||||||||
Sbjct: 103953 gtgtgcgtgtagccagataacccc 103930



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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 302     tcgcgctgctggtgtccggc 321
               ||||||||||||||||||||
Sbjct: 3364384 tcgcgctgctggtgtccggc 3364365



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>dbj|AB022645.1| Magnetospirillum magnetotacticum hosA gene for heme o synthase,
           complete cds
          Length = 867

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 tccgagaccaaccggatcat 253
           ||||||||||||||||||||
Sbjct: 616 tccgagaccaaccggatcat 635


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,563,692
Number of Sequences: 3902068
Number of extensions: 1563692
Number of successful extensions: 33753
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33411
Number of HSP's gapped (non-prelim): 342
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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