No.
Definition
Score (bits)
E Value
1 ref|XM_475288.1| Oryza sativa (japonica cultivar-group), predic...
117
2e-23
2 gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome...
113
4e-22
3 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
113
4e-22
4 ref|XM_475294.1| Oryza sativa (japonica cultivar-group), predic...
105
9e-20
5 gb|AC119292.2| Oryza sativa (japonica cultivar-group) chromosome...
101
1e-18
6 ref|XM_475293.1| Oryza sativa (japonica cultivar-group), predic...
74
3e-10
7 ref|XM_475287.1| Oryza sativa (japonica cultivar-group), predic...
62
1e-06
8 ref|XM_475286.1| Oryza sativa (japonica cultivar-group), predic...
54
3e-04
9 gb|AY022137.1| Oryza sativa microsatellite MRG4462 containing (T...
54
3e-04
10 gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
44
0.28
11 gb|AE009609.1| Brucella melitensis 16M chromosome I, section 166...
44
0.28
12 gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...
44
0.28
13 emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...
44
0.28
14 ref|XM_362740.1| Magnaporthe grisea 70-15 hypothetical protein (...
42
1.1
15 gb|AF020803.2|AF020803 Homo sapiens chromosome 21 clone cosmid Q...
42
1.1
16 gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clon...
42
1.1
17 dbj|AP001724.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
42
1.1
18 dbj|BS000198.1| Pan troglodytes chromosome 22 clone:RP43-091A22,...
42
1.1
19 emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 ...
42
1.1
20 gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
40
4.4
21 gb|AY781336.1| Danio rerio talin 1 (tln1) mRNA, complete cds
40
4.4
22 gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
40
4.4
23 ref|XM_843843.1| PREDICTED: Canis familiaris similar to lipocali...
40
4.4
24 gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl...
40
4.4
25 ref|NM_001009560.1| Danio rerio talin 1 (tln1), mRNA
40
4.4
26 emb|BX323809.14| Zebrafish DNA sequence from clone DKEY-42J10 in...
40
4.4
27 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
4.4
28 gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
40
4.4
29 gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole...
40
4.4
30 gb|CP000036.1| Shigella boydii Sb227, complete genome
40
4.4
31 gb|AC023481.6| Homo sapiens chromosome 3 clone RP11-424H6 map 3p...
40
4.4
32 gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p...
40
4.4
33 gb|CP000038.1| Shigella sonnei Ss046, complete genome
40
4.4
34 dbj|AB022645.1| Magnetospirillum magnetotacticum hosA gene for h...
40
4.4
>gb|AC105769.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07,
complete sequence
Length = 106166
Score = 113 bits (57), Expect = 4e-22
Identities = 129/153 (84%)
Strand = Plus / Plus
Query: 129 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 188
||||||||||| || || |||||||| ||||||||||| | || ||| || | || ||
Sbjct: 93937 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 93996
Query: 189 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 248
| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 93997 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 94056
Query: 249 atcattgccgtcgtctgcgccgtcttctcatgg 281
||| | | |||||||||||||||| ||||||||
Sbjct: 94057 atcgtcggcgtcgtctgcgccgtcatctcatgg 94089
Score = 101 bits (51), Expect = 1e-18
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||| | |||||||||||||||||||| ||||||||||| |||||| |
Sbjct: 85836 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 85895
Query: 255 gccgtcgtctgcgccgtcttctc 277
| |||||||||||||||||||||
Sbjct: 85896 ggcgtcgtctgcgccgtcttctc 85918
Score = 61.9 bits (31), Expect = 1e-06
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||| | ||||||||||| ||| |||| ||||||||||| |||||| |
Sbjct: 82711 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 82770
Query: 255 gccgtcgtctgcgcc 269
| |||||| ||||||
Sbjct: 82771 ggcgtcgtgtgcgcc 82785
Score = 58.0 bits (29), Expect = 2e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
||||| ||| ||||||| ||||||||||||||| | ||||||||| | |||||||||
Sbjct: 93473 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 93529
Score = 54.0 bits (27), Expect = 3e-04
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 9 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 82394 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 82448
Score = 46.1 bits (23), Expect = 0.072
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 10 cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 64
|||| ||||| ||||||||| |||| || ||||||||||| ||| | ||||||||
Sbjct: 85521 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 85575
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 113 bits (57), Expect = 4e-22
Identities = 129/153 (84%)
Strand = Plus / Plus
Query: 129 gcgctcgggctcggggtgtgcgcggcgatcttcctggtcgtagcccagatcgtcttggcg 188
||||||||||| || || |||||||| ||||||||||| | || ||| || | || ||
Sbjct: 21115072 gcgctcgggctgggcgtatgcgcggccatcttcctggtgatggcgcaggtcaccgtgacg 21115131
Query: 189 gttgttggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccgg 248
| || |||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct: 21115132 gccgtcggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcgg 21115191
Query: 249 atcattgccgtcgtctgcgccgtcttctcatgg 281
||| | | |||||||||||||||| ||||||||
Sbjct: 21115192 atcgtcggcgtcgtctgcgccgtcatctcatgg 21115224
Score = 101 bits (51), Expect = 1e-18
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |
Sbjct: 21162206 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21162265
Query: 255 gccgtcgtctgcgccgtcttctcatgg 281
| | |||||||||||||| ||||||||
Sbjct: 21162266 ggcatcgtctgcgccgtcgtctcatgg 21162292
Score = 101 bits (51), Expect = 1e-18
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||| | |||||||||||||||||||| ||||||||||| |||||| |
Sbjct: 21106971 ggcggctgctgcgggtgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 21107030
Query: 255 gccgtcgtctgcgccgtcttctc 277
| |||||||||||||||||||||
Sbjct: 21107031 ggcgtcgtctgcgccgtcttctc 21107053
Score = 69.9 bits (35), Expect = 5e-09
Identities = 140/175 (80%)
Strand = Plus / Plus
Query: 107 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 166
|||| ||||||| || ||||||||| || ||| ||||| |||||||| |||||||| |
Sbjct: 21156451 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 21156510
Query: 167 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 226
|||| |||||| | || ||| || |||||||||||||||| ||||||||||| |
Sbjct: 21156511 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 21156570
Query: 227 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
|||||| || |||||||| ||||| || | |||| ||||||| ||| | ||||||
Sbjct: 21156571 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 21156625
Score = 67.9 bits (34), Expect = 2e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 22 cccttggggtgctgagtgccatcctggggttctcagccgagggcac 67
|||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 21161894 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 21161939
Score = 65.9 bits (33), Expect = 8e-08
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 21156252 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 21156308
Score = 61.9 bits (31), Expect = 1e-06
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||| | ||||||||||| ||| |||| ||||||||||| |||||| |
Sbjct: 21103846 ggcggctgctgcgggtgctgcaagtcccgtgccgtcccgtccgagaccaagcggatcgtc 21103905
Query: 255 gccgtcgtctgcgcc 269
| |||||| ||||||
Sbjct: 21103906 ggcgtcgtgtgcgcc 21103920
Score = 58.0 bits (29), Expect = 2e-05
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
||||| ||| ||||||| ||||||||||||||| | ||||||||| | |||||||||
Sbjct: 21114608 tccctggggttgctgagcgccatcctggggttcgccgccgagggctctaagctcact 21114664
Score = 56.0 bits (28), Expect = 7e-05
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 226 ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
||||||| || |||||||| |||||||| | |||||||||||||||| | ||||||
Sbjct: 21151077 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 21151132
Score = 54.0 bits (27), Expect = 3e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagg 63
||||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 21150752 tccctggggttgctgagcgccatcctggggttctccgccgagg 21150794
Score = 54.0 bits (27), Expect = 3e-04
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 9 tcggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgagg 63
||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||
Sbjct: 21103529 tcggtggttggttccctgggcgtgctcagcgccatcctggggttcgctgccgagg 21103583
Score = 46.1 bits (23), Expect = 0.072
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 10 cggtcgttggttcccttggggtgctgagtgccatcctggggttctcagccgaggg 64
|||| ||||| ||||||||| |||| || ||||||||||| ||| | ||||||||
Sbjct: 21106656 cggtggttgggtcccttgggttgctcagcgccatcctgggattcgccgccgaggg 21106710
>gb|AC119292.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0088F07, complete sequence
Length = 139180
Score = 101 bits (51), Expect = 1e-18
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 195 ggcggctgctgcggcttgtgcaagtcccgcgccatcccctccgagaccaaccggatcatt 254
|||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| |
Sbjct: 42989 ggcggctgctgcggctgctgcaagtcccgcgccatcccgtccgagaccaagcggatcgtc 43048
Query: 255 gccgtcgtctgcgccgtcttctcatgg 281
| | |||||||||||||| ||||||||
Sbjct: 43049 ggcatcgtctgcgccgtcgtctcatgg 43075
Score = 69.9 bits (35), Expect = 5e-09
Identities = 140/175 (80%)
Strand = Plus / Plus
Query: 107 gtgcgtgtacccagataaccccgcgctcgggctcggggtgtgcgcggcgatcttcctggt 166
|||| ||||||| || ||||||||| || ||| ||||| |||||||| |||||||| |
Sbjct: 37234 gtgcctgtacccggagaaccccgcgaccgcgctgggggtctgcgcggccgtcttcctgct 37293
Query: 167 cgtagcccagatcgtcttggcggttgttggcggctgctgcggcttgtgcaagtcccgcgc 226
|||| |||||| | || ||| || |||||||||||||||| ||||||||||| |
Sbjct: 37294 gttagcgcagatcaccgtgtcggccgtcggcggctgctgcggctgctgcaagtcccggtc 37353
Query: 227 catcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
|||||| || |||||||| ||||| || | |||| ||||||| ||| | ||||||
Sbjct: 37354 catcccgtcggagaccaagcggataatcggcgtcatctgcgctgtcatgtcatgg 37408
Score = 67.9 bits (34), Expect = 2e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 22 cccttggggtgctgagtgccatcctggggttctcagccgagggcac 67
|||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 42677 ccctgggggtgctgagcgccatcctggggttctccgccgagggcac 42722
Score = 65.9 bits (33), Expect = 8e-08
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagggcacgaagctcact 77
||||| ||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||
Sbjct: 37035 tccctggggttgctgagcgccatcctggggttctccgccgagggcacaaagatcact 37091
Score = 56.0 bits (28), Expect = 7e-05
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 226 ccatcccctccgagaccaaccggatcattgccgtcgtctgcgccgtcttctcatgg 281
||||||| || |||||||| |||||||| | |||||||||||||||| | ||||||
Sbjct: 31860 ccatcccgtcggagaccaagcggatcatcggcgtcgtctgcgccgtcatgtcatgg 31915
Score = 54.0 bits (27), Expect = 3e-04
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 21 tcccttggggtgctgagtgccatcctggggttctcagccgagg 63
||||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct: 31535 tccctggggttgctgagcgccatcctggggttctccgccgagg 31577
>dbj|AB022645.1 | Magnetospirillum magnetotacticum hosA gene for heme o synthase,
complete cds
Length = 867
Score = 40.1 bits (20), Expect = 4.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 234 tccgagaccaaccggatcat 253
||||||||||||||||||||
Sbjct: 616 tccgagaccaaccggatcat 635
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,563,692
Number of Sequences: 3902068
Number of extensions: 1563692
Number of successful extensions: 33753
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33411
Number of HSP's gapped (non-prelim): 342
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)