Clone Name | bart50b09 |
---|---|
Clone Library Name | barley_pub |
>gb|AY337321.1| Triticum aestivum pyridoxal kinase (SOS4) mRNA, complete cds Length = 1477 Score = 710 bits (358), Expect = 0.0 Identities = 388/398 (97%) Strand = Plus / Plus Query: 50 ctgaccagctttgcttgccttcgggctgctgcgatttcccagggaggggcctggttggcg 109 ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| Sbjct: 4 ctgaccagctttgcttgccttcgtgctgctgcgatttcgcagggacgggcctggttggcg 63 Query: 110 gcgggggacgagcggaggggcggtgcatccggcgatggcgcggccgccgatcctctccgt 169 |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct: 64 gcgggggacgagtggaggggcggtgcatccagcgatggcacggccgccgatcctctccgt 123 Query: 170 cgcactgccgtctgacacggggcgcgtgctcagcatccagtcccacaccgtccagggcta 229 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 tgcactgccgtctgatacggggcgcgtgctcagcatccagtcccacaccgtccagggcta 183 Query: 230 tgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggatccgat 289 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 cgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggatccgat 243 Query: 290 aaactctgtacagttttctaatcatacaggatacccaaaatttagaggtcaggttctcaa 349 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 244 aaactctgtacagttttctaatcatacaggatacccaaaatttagaggacaggttctcaa 303 Query: 350 tggcaatcagctgtgggatcttattgaaggactggaggaaaatgaattattgcactatac 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 tggcaatcagctgtgggatcttattgaaggactggaggaaaatgaattattgcactatac 363 Query: 410 acatttgttaacaggttacatcggctctgtttcctttt 447 |||||||||||||||||||||||||||||||||||||| Sbjct: 364 acatttgttaacaggttacatcggctctgtttcctttt 401
>gb|BT009172.1| Triticum aestivum clone wl1n.pk0106.e8:fis, full insert mRNA sequence Length = 956 Score = 375 bits (189), Expect = e-101 Identities = 276/305 (90%) Strand = Plus / Plus Query: 143 gatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgctcag 202 ||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| Sbjct: 207 gatggcgcggccgccgatcctatccgtcgcgctgccgtctgacaccggccgtgtgctcag 266 Query: 203 catccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgca 262 |||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| Sbjct: 267 catccagtcccacaccgtccaggggtatgttggcaacaaatcggccgtctttcccctgca 326 Query: 263 actccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggata 322 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 327 gctccttggctttgatgtggatccaataaactctgtacagttttctaatcatacaggata 386 Query: 323 cccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattgaaggact 382 ||||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct: 387 cccaacatttagaggtcaggttcttaatggcaaacagctctgggaccttattgaaggact 446 Query: 383 ggaggaaaatgaattattgcactatacacatttgttaacaggttacatcggctctgtttc 442 |||||||||| | || | || ||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 447 ggaggaaaatcagttgcttcattatacccatttattaacaggttatataggctcagtttc 506 Query: 443 ctttt 447 ||||| Sbjct: 507 ctttt 511
>gb|AY105235.1| Zea mays PCO106437 mRNA sequence Length = 1437 Score = 375 bits (189), Expect = e-101 Identities = 276/305 (90%) Strand = Plus / Plus Query: 143 gatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgctcag 202 ||||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| Sbjct: 58 gatggcgcggccgccgatcctatccgtcgcgctgccgtctgacaccggccgtgtgctcag 117 Query: 203 catccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgca 262 |||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| Sbjct: 118 catccagtcccacaccgtccaggggtatgttggcaacaaatcggccgtctttcccctgca 177 Query: 263 actccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggata 322 |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 178 gctccttggctttgatgtggatccaataaactctgtacagttttctaatcatacaggata 237 Query: 323 cccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattgaaggact 382 ||||| |||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct: 238 cccaacatttagaggtcaggttcttaatggcaaacagctctgggaccttattgaaggact 297 Query: 383 ggaggaaaatgaattattgcactatacacatttgttaacaggttacatcggctctgtttc 442 |||||||||| | || | || ||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 298 ggaggaaaatcagttgcttcattatacccatttattaacaggttatataggctcagtttc 357 Query: 443 ctttt 447 ||||| Sbjct: 358 ctttt 362
>dbj|AK066514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069D01, full insert sequence Length = 1479 Score = 359 bits (181), Expect = 5e-96 Identities = 277/309 (89%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgc 198 |||||||||||||||||||| | ||||||||||| || || || |||||||| ||||||| Sbjct: 169 cggcgatggcgcggccgccggtgctctccgtcgcgcttccctccgacacgggacgcgtgc 228 Query: 199 tcagcatccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgt 258 |||||||||||||||||||||||||||| || |||||||||||||| || |||||||| Sbjct: 229 tcagcatccagtcccacaccgtccagggatacgttggcaacaaatcagcagtctttcccc 288 Query: 259 tgcaactccttggttttgatgtggatccgataaactctgtacagttttctaatcatacag 318 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 289 tgcaactcctgggctttgatgtggatccgataaactcggtacagttttctaatcatacag 348 Query: 319 gatacccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattgaag 378 | ||||||| ||||||||| ||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 349 ggtacccaacatttagaggacaggtcctcaacggcagtcagctgtgggatcttattgaag 408 Query: 379 gactggaggaaaatgaattattgcactatacacatttgttaacaggttacatcggctctg 438 | |||| |||||| || |||||||| ||||| ||||| ||||||||||| || || |||| Sbjct: 409 ggctggcggaaaacgatttattgcattatacccatttattaacaggttatattggatctg 468 Query: 439 tttcctttt 447 ||||||||| Sbjct: 469 tttcctttt 477
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 231 gttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggatccgata 290 |||||||||||||| || |||||||| |||||||||| || |||||||||||||||||| Sbjct: 25306121 gttggcaacaaatcagcagtctttcccctgcaactcctgggctttgatgtggatccgata 25306180 Query: 291 aactctgtacagttttctaatcatacagg 319 ||||| ||||||||||||||||||||||| Sbjct: 25306181 aactcggtacagttttctaatcatacagg 25306209 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgc 198 |||||||||||||||||||| | ||||||||||| || || || |||||||| ||||||| Sbjct: 25305526 cggcgatggcgcggccgccggtgctctccgtcgcgcttccctccgacacgggacgcgtgc 25305585 Query: 199 tcagcatccagtcccacaccgtccagg 225 ||||||||||||||||||||||||||| Sbjct: 25305586 tcagcatccagtcccacaccgtccagg 25305612 Score = 115 bits (58), Expect = 1e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 316 caggatacccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattg 375 |||| ||||||| ||||||||| ||||| ||||| |||| |||||||||||||||||||| Sbjct: 25306289 cagggtacccaacatttagaggacaggtcctcaacggcagtcagctgtgggatcttattg 25306348 Query: 376 aaggactggaggaaaatgaattattgcactatacacatttgttaacaggt 425 |||| |||| |||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 25306349 aagggctggcggaaaacgatttattgcattatacccatttattaacaggt 25306398
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 231 gttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggatccgata 290 |||||||||||||| || |||||||| |||||||||| || |||||||||||||||||| Sbjct: 25234297 gttggcaacaaatcagcagtctttcccctgcaactcctgggctttgatgtggatccgata 25234356 Query: 291 aactctgtacagttttctaatcatacagg 319 ||||| ||||||||||||||||||||||| Sbjct: 25234357 aactcggtacagttttctaatcatacagg 25234385 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgc 198 |||||||||||||||||||| | ||||||||||| || || || |||||||| ||||||| Sbjct: 25233702 cggcgatggcgcggccgccggtgctctccgtcgcgcttccctccgacacgggacgcgtgc 25233761 Query: 199 tcagcatccagtcccacaccgtccagg 225 ||||||||||||||||||||||||||| Sbjct: 25233762 tcagcatccagtcccacaccgtccagg 25233788 Score = 115 bits (58), Expect = 1e-22 Identities = 97/110 (88%) Strand = Plus / Plus Query: 316 caggatacccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattg 375 |||| ||||||| ||||||||| ||||| ||||| |||| |||||||||||||||||||| Sbjct: 25234465 cagggtacccaacatttagaggacaggtcctcaacggcagtcagctgtgggatcttattg 25234524 Query: 376 aaggactggaggaaaatgaattattgcactatacacatttgttaacaggt 425 |||| |||| |||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 25234525 aagggctggcggaaaacgatttattgcattatacccatttattaacaggt 25234574
>emb|AL732535.4|CNS08C9A Oryza sativa chromosome 12, . BAC OSJNBa0035N13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158927 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 231 gttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggatccgata 290 |||||||||||||| || |||||||| |||||||||| || |||||||||||||||||| Sbjct: 31069 gttggcaacaaatcagcagtctttcccctgcaactcctgggctttgatgtggatccgata 31010 Query: 291 aactctgtacagttttctaatcatacagg 319 ||||| ||||||||||||||||||||||| Sbjct: 31009 aactcggtacagttttctaatcatacagg 30981 Score = 117 bits (59), Expect = 3e-23 Identities = 80/87 (91%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccgatcctctccgtcgcactgccgtctgacacggggcgcgtgc 198 |||||||||||||||||||| | ||||||||||| || || || |||||||| ||||||| Sbjct: 31664 cggcgatggcgcggccgccggtgctctccgtcgcgcttccctccgacacgggacgcgtgc 31605 Query: 199 tcagcatccagtcccacaccgtccagg 225 ||||||||||||||||||||||||||| Sbjct: 31604 tcagcatccagtcccacaccgtccagg 31578 Score = 115 bits (58), Expect = 1e-22 Identities = 97/110 (88%) Strand = Plus / Minus Query: 316 caggatacccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattg 375 |||| ||||||| ||||||||| ||||| ||||| |||| |||||||||||||||||||| Sbjct: 30901 cagggtacccaacatttagaggacaggtcctcaacggcagtcagctgtgggatcttattg 30842 Query: 376 aaggactggaggaaaatgaattattgcactatacacatttgttaacaggt 425 |||| |||| |||||| || |||||||| ||||| ||||| ||||||||| Sbjct: 30841 aagggctggcggaaaacgatttattgcattatacccatttattaacaggt 30792
>gb|DQ006813.1| Glycine max pyridoxal kinase mRNA, complete cds Length = 1102 Score = 83.8 bits (42), Expect = 4e-13 Identities = 183/230 (79%) Strand = Plus / Plus Query: 198 ctcagcatccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccg 257 |||||||| || || |||||||| ||||| |||||||| || ||||| |||||||| || Sbjct: 170 ctcagcattcaatctcacaccgttcaggggtatgttggtaataaatccgctgtcttccct 229 Query: 258 ttgcaactccttggttttgatgtggatccgataaactctgtacagttttctaatcataca 317 ||||||| || || | |||||| ||||| || || || || |||||||| ||||||||| Sbjct: 230 ctgcaactactgggatatgatgtcgatccaattaattccgtgcagttttcgaatcataca 289 Query: 318 ggatacccaaaatttagaggtcaggttctcaatggcaatcagctgtgggatcttattgaa 377 ||||| || | |||| ||||||||| | ||||| | || || |||||||| || ||| Sbjct: 290 ggatatccgacgtttaagggtcaggttttgaatggacagcaactctgggatctaatcgaa 349 Query: 378 ggactggaggaaaatgaattattgcactatacacatttgttaacaggtta 427 || || || | |||||| |||||| |||||| || ||| |||||||||| Sbjct: 350 ggccttgaaggaaatgatttattgttctatactcacttgctaacaggtta 399
>ref|NM_123144.2| Arabidopsis thaliana SOS4 (SALT OVERLY SENSITIVE 4); kinase AT5G37850 (SOS4) mRNA, complete cds Length = 1196 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Plus Query: 204 atccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgcaa 263 ||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| | ||| Sbjct: 149 atccaatcccacactgttcagggatatgttggtaacaaatcagctgtctttcctcttcaa 208 Query: 264 ctccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggatac 323 | | || | |||||||||||| || ||||||||||| || || ||||||||||| || Sbjct: 209 ttgttggggtatgatgtggatccaatcaactctgtacaattctcgaatcatacagggtat 268 Query: 324 ccaaaatttagaggtcaggtt 344 || | ||||| ||| |||||| Sbjct: 269 cctacatttaaaggacaggtt 289
>gb|AF404865.2| Arabidopsis thaliana pyridoxal kinase mRNA, complete cds Length = 930 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Plus Query: 204 atccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgcaa 263 ||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| | ||| Sbjct: 61 atccaatcccacactgttcagggatatgttggtaacaaatcagctgtctttcctcttcaa 120 Query: 264 ctccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggatac 323 | | || | |||||||||||| || ||||||||||| || || ||||||||||| || Sbjct: 121 ttgttggggtatgatgtggatccaatcaactctgtacaattctcgaatcatacagggtat 180 Query: 324 ccaaaatttagaggtcaggtt 344 || | ||||| ||| |||||| Sbjct: 181 cctacatttaaaggacaggtt 201
>gb|BT008815.1| Arabidopsis thaliana At5g37850 mRNA, complete cds Length = 930 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Plus Query: 204 atccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgcaa 263 ||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| | ||| Sbjct: 61 atccaatcccacactgttcagggatatgttggtaacaaatcagctgtctttcctcttcaa 120 Query: 264 ctccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggatac 323 | | || | |||||||||||| || ||||||||||| || || ||||||||||| || Sbjct: 121 ttgttggggtatgatgtggatccaatcaactctgtacaattctcgaatcatacagggtat 180 Query: 324 ccaaaatttagaggtcaggtt 344 || | ||||| ||| |||||| Sbjct: 181 cctacatttaaaggacaggtt 201
>gb|AY136333.1| Arabidopsis thaliana pyridoxal kinase-like protein (At5g37850) mRNA, complete cds Length = 1135 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Plus Query: 204 atccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgcaa 263 ||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| | ||| Sbjct: 149 atccaatcccacactgttcagggatatgttggtaacaaatcagctgtctttcctcttcaa 208 Query: 264 ctccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggatac 323 | | || | |||||||||||| || ||||||||||| || || ||||||||||| || Sbjct: 209 ttgttggggtatgatgtggatccaatcaactctgtacaattctcgaatcatacagggtat 268 Query: 324 ccaaaatttagaggtcaggtt 344 || | ||||| ||| |||||| Sbjct: 269 cctacatttaaaggacaggtt 289
>gb|AY084419.1| Arabidopsis thaliana clone 107973 mRNA, complete sequence Length = 1138 Score = 73.8 bits (37), Expect = 4e-10 Identities = 115/141 (81%) Strand = Plus / Plus Query: 204 atccagtcccacaccgtccagggctatgttggcaacaaatctgctgtctttccgttgcaa 263 ||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| | ||| Sbjct: 91 atccaatcccacactgttcagggatatgttggtaacaaatcagctgtctttcctcttcaa 150 Query: 264 ctccttggttttgatgtggatccgataaactctgtacagttttctaatcatacaggatac 323 | | || | |||||||||||| || ||||||||||| || || ||||||||||| || Sbjct: 151 ttgttggggtatgatgtggatccaatcaactctgtacaattctcgaatcatacagggtat 210 Query: 324 ccaaaatttagaggtcaggtt 344 || | ||||| ||| |||||| Sbjct: 211 cctacatttaaaggacaggtt 231
>gb|AF400125.1| Arabidopsis thaliana pyridoxal kinase-like protein SOS4 (SOS4) gene, complete cds, alternatively spliced Length = 3428 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 223 agggctatgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtgg 282 |||| |||||||| |||||||| ||||||||||| | ||| | | || | |||||||| Sbjct: 1108 agggatatgttggtaacaaatcagctgtctttcctcttcaattgttggggtatgatgtgg 1167 Query: 283 atccgataaactctgtacagttttctaatcatacagg 319 |||| || ||||||||||| || || ||||||||||| Sbjct: 1168 atccaatcaactctgtacaattctcgaatcatacagg 1204
>dbj|AB012241.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18L3 Length = 78239 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Plus Query: 223 agggctatgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtgg 282 |||| |||||||| |||||||| ||||||||||| | ||| | | || | |||||||| Sbjct: 3388 agggatatgttggtaacaaatcagctgtctttcctcttcaattgttggggtatgatgtgg 3447 Query: 283 atccgataaactctgtacagttttctaatcatacagg 319 |||| || ||||||||||| || || ||||||||||| Sbjct: 3448 atccaatcaactctgtacaattctcgaatcatacagg 3484
>ref|XM_701784.1| PREDICTED: Danio rerio similar to Pyridoxal kinase (Pyridoxine kinase), transcript variant 3 (LOC556101), mRNA Length = 1729 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 225 ggctatgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggat 284 ||||||||||| |||||||||||| ||||| ||||| | || || ||||| ||||| Sbjct: 195 ggctatgttggaaacaaatctgctacttttcctttgcaggtgctgggctttgaagtggac 254 Query: 285 ccgataaactctgtacagttttctaatcatacagg 319 | ||||||||||| ||||| || ||||||||||| Sbjct: 255 actataaactctgtgcagttctccaatcatacagg 289
>ref|XM_701783.1| PREDICTED: Danio rerio similar to Pyridoxal kinase (Pyridoxine kinase), transcript variant 2 (LOC556101), mRNA Length = 1668 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 225 ggctatgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggat 284 ||||||||||| |||||||||||| ||||| ||||| | || || ||||| ||||| Sbjct: 218 ggctatgttggaaacaaatctgctacttttcctttgcaggtgctgggctttgaagtggac 277 Query: 285 ccgataaactctgtacagttttctaatcatacagg 319 | ||||||||||| ||||| || ||||||||||| Sbjct: 278 actataaactctgtgcagttctccaatcatacagg 312
>ref|XM_678071.1| PREDICTED: Danio rerio similar to Pyridoxal kinase (Pyridoxine kinase), transcript variant 1 (LOC556101), mRNA Length = 1752 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 225 ggctatgttggcaacaaatctgctgtctttccgttgcaactccttggttttgatgtggat 284 ||||||||||| |||||||||||| ||||| ||||| | || || ||||| ||||| Sbjct: 218 ggctatgttggaaacaaatctgctacttttcctttgcaggtgctgggctttgaagtggac 277 Query: 285 ccgataaactctgtacagttttctaatcatacagg 319 | ||||||||||| ||||| || ||||||||||| Sbjct: 278 actataaactctgtgcagttctccaatcatacagg 312
>gb|BT013971.1| Lycopersicon esculentum clone 133015R, mRNA sequence Length = 1334 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 275 tgatgtggatccgataaactctgtacagttttctaatcatacaggatacccaa 327 ||||||||| || || || ||||||||||| || ||||| ||||||||||||| Sbjct: 309 tgatgtggacccaatcaattctgtacagttctcaaatcacacaggatacccaa 361
>gb|DQ006812.1| Solanum tuberosum pyridoxal kinase mRNA, complete cds Length = 1339 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 275 tgatgtggatccgataaactctgtacagttttctaatcatacaggatacccaa 327 ||||||||| || || || ||||||||||| || ||||| ||||||||||||| Sbjct: 388 tgatgtggacccaatcaattctgtacagttctcaaatcacacaggatacccaa 440
>emb|AL021328.2|HS232P20 Human DNA sequence from clone RP1-232P20 on chromosome 6p25, complete sequence Length = 94734 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 25 tggcctctccttctccctcctgtg 48 |||||||||||||||||||||||| Sbjct: 69922 tggcctctccttctccctcctgtg 69899
>emb|CT030525.1| Xenopus tropicalis finished cDNA, clone TNeu126g10 Length = 2924 Score = 46.1 bits (23), Expect = 0.097 Identities = 29/31 (93%) Strand = Plus / Plus Query: 289 taaactctgtacagttttctaatcatacagg 319 |||||||||| ||||| |||||||||||||| Sbjct: 157 taaactctgtgcagttctctaatcatacagg 187
>emb|AL353715.21| Human DNA sequence from clone CTD-3184A7 on chromosome 20 Contains the 5' end of the GMEB2 gene for glucocorticoid modulatory element binding protein 2, the gene for SCG10-like protein (SCLIP) (ortholog of rabbit neuroplasticin-2 (NPC2)), the TNFRSF6B gene for member 6 (decoy) of tumor necrosis factor receptor superfamily, a novel gene and four CpG islands, complete sequence Length = 92458 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 tcccagggaggggcctggttgg 107 |||||||||||||||||||||| Sbjct: 64716 tcccagggaggggcctggttgg 64695
>gb|AF217796.1|AF217796 Homo sapiens SCG10 like-protein, helicase-like protein NHL, M68, and ADP-ribosylation factor related protein 1 (ARFRP1) genes, complete cds Length = 114793 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 tcccagggaggggcctggttgg 107 |||||||||||||||||||||| Sbjct: 58046 tcccagggaggggcctggttgg 58025
>gb|AE007266.1| Sinorhizobium meliloti 1021 plasmid pSymA section 72 of 121 of the complete plasmid sequence Length = 11856 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 tgcatccggcgatggcgcggc 153 ||||||||||||||||||||| Sbjct: 5509 tgcatccggcgatggcgcggc 5489
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgccgatcc 162 ||||||||||||| ||||||||||| Sbjct: 1185278 ccggcgatggcgcagccgccgatcc 1185254
>ref|XM_525391.1| PREDICTED: Pan troglodytes KIAA1196 protein (LOC470007), mRNA Length = 3408 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 gtgctcagcatccagtccca 214 |||||||||||||||||||| Sbjct: 3106 gtgctcagcatccagtccca 3125
>ref|NM_197595.1| Oryza sativa (japonica cultivar-group) protein kinase-like protein (OSJNBb0015I11.13), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 328 cggcgatggcgcggccgccg 309
>ref|NM_190827.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 864 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 808 ccggcgatggcgcggccgcc 789
>ref|XM_470413.1| Oryza sativa (japonica cultivar-group), mRNA Length = 828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 289 cggcgatggcgcggccgccg 270
>gb|AC134472.4| Mus musculus BAC clone RP23-123E16 from chromosome 18, complete sequence Length = 185134 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gcctctccttctccctcctg 46 |||||||||||||||||||| Sbjct: 121809 gcctctccttctccctcctg 121828
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 ctctccttctccctcctgtg 48 |||||||||||||||||||| Sbjct: 76142 ctctccttctccctcctgtg 76161
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 35506950 cggcgatggcgcggccgccg 35506969
>gb|AC125357.4| Mus musculus BAC clone RP23-235J18 from chromosome 9, complete sequence Length = 217511 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aaaagagaacaatttggcct 30 |||||||||||||||||||| Sbjct: 114655 aaaagagaacaatttggcct 114636
>gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone CL026180.5 R2R3-MYB gene region Length = 24910 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 21460 ccggcgatggcgcggccgcc 21441
>gb|AC133167.3| Mus musculus BAC clone RP24-211H4 from chromosome 18, complete sequence Length = 159356 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctcagcatccagtcccacaccgtccagg 225 |||||||||| |||||||||||||||| Sbjct: 125954 ctcagcatccgctcccacaccgtccagg 125927
>gb|AC103606.16| Mus musculus chromosome 18, clone RP23-336E5, complete sequence Length = 200267 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctcagcatccagtcccacaccgtccagg 225 |||||||||| |||||||||||||||| Sbjct: 5792 ctcagcatccgctcccacaccgtccagg 5765
>gb|AC092000.3| Homo sapiens BAC clone RP11-346I7 from 7, complete sequence Length = 157101 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gatttcccagggaggggcct 101 |||||||||||||||||||| Sbjct: 131478 gatttcccagggaggggcct 131459
>emb|AL118506.27|HSJ591C20 Human DNA sequence from clone RP4-591C20 on chromosome 20 Contains the C20orf135 gene for chromosome 20 open reading frame 135, the TPD52L2 gene for tumor protein D52-like protein 2, the DNAJC5 gene for member 5 of DnaJ (Hsp40) homolog subfamily C, the URKL1 gene for uridine kinase-like 1, the gene for a novel protein (KIAA1196), the C20orf136 gene for chromosome 20 open reading frame 136, the 5' end of the C20orf14 gene for chromosome 20 open reading frame 14 and twelve CpG islands, complete sequence Length = 139505 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gtgctcagcatccagtccca 214 |||||||||||||||||||| Sbjct: 101136 gtgctcagcatccagtccca 101117
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 atgtggatccgataaactct 296 |||||||||||||||||||| Sbjct: 32757 atgtggatccgataaactct 32776
>emb|AL732607.9| Mouse DNA sequence from clone RP23-16B24 on chromosome 11 Contains a novel pseudogene, two novel genes and a methionine aminopeptidase 2 (Metap2) pseudogene, complete sequence Length = 66800 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 caactccttggttttgatgtggat 284 ||||| |||||||||||||||||| Sbjct: 21277 caactgcttggttttgatgtggat 21254
>dbj|AB225368.1| Aspergillus oryzae cDNA, contig sequence: AoEST2220 Length = 771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcgggctgctgcgatttccc 89 |||||||||||||||||||| Sbjct: 727 tcgggctgctgcgatttccc 708
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tcgggctgctgcgatttccc 89 |||||||||||||||||||| Sbjct: 1549885 tcgggctgctgcgatttccc 1549866
>gb|U84905.1|IPU84905 Ipomoea purpurea Imex8 chalcone synthase-A (CHS-A) gene, complete cds Length = 1565 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 902 cggcgatggcgcggccgccg 921
>gb|AC005552.3| Homo sapiens chromosome 17, clone RP11-212E8, complete sequence Length = 165837 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 cctctccttctccctcctgt 47 |||||||||||||||||||| Sbjct: 88017 cctctccttctccctcctgt 88036
>gb|AF427505.1|AF427505 Uvaria pierrei 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; 26S ribosomal RNA gene, partial sequence Length = 815 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 tggcgcggccgccgatcctctccg 168 ||||||||||| |||||||||||| Sbjct: 180 tggcgcggccggcgatcctctccg 203
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 82464 cggcgatggcgcggccgccg 82445
>emb|BX677668.10| Zebrafish DNA sequence from clone CH211-141E20 in linkage group 1, complete sequence Length = 182809 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 ggctatgttggcaacaaatctgct 248 ||||||||||| |||||||||||| Sbjct: 153467 ggctatgttggaaacaaatctgct 153444 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 288 ataaactctgtacagttttctaatcatacagg 319 ||||||||||| ||||| || ||||||||||| Sbjct: 153244 ataaactctgtgcagttctccaatcatacagg 153213
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 atgtggatccgataaactct 296 |||||||||||||||||||| Sbjct: 26256180 atgtggatccgataaactct 26256199
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 20681012 cggcgatggcgcggccgccg 20680993
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 35597022 cggcgatggcgcggccgccg 35597041
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 37926498 ccggcgatggcgcggccgcc 37926479
>gb|AC090885.1|AC090885 Homo sapiens chromosome 3 clone RP11-270I6 map 3p, complete sequence Length = 193264 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgtacagttttctaatcata 315 |||||||||||||||||||| Sbjct: 169259 tgtacagttttctaatcata 169240
>gb|AC090942.1|AC090942 Homo sapiens chromosome 3 clone RP11-220D14 map 3p, complete sequence Length = 172238 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgtacagttttctaatcata 315 |||||||||||||||||||| Sbjct: 3549 tgtacagttttctaatcata 3530
>gb|AC066589.3|AC066589 Homo sapiens chromosome 3 clone RP11-309M10 map 3p, complete sequence Length = 182171 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tgtacagttttctaatcata 315 |||||||||||||||||||| Sbjct: 83552 tgtacagttttctaatcata 83571
>gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, complete sequence Length = 111128 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gatggcgcggccgccgatcctctc 166 ||||||||||||||||| |||||| Sbjct: 17988 gatggcgcggccgccgaccctctc 17965
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 39913 cggcgatggcgcggccgccg 39932
>gb|AF155142.1|AF155142 Mus musculus mixed lineage kinase 3 (Mlk3) and two pore domain K+ channel subunit (Kcnk6) genes, complete cds Length = 46440 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cagggctatgttggcaacaa 241 |||||||||||||||||||| Sbjct: 969 cagggctatgttggcaacaa 988
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 147854 ccggcgatggcgcggccgcc 147835
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 7442 ccggcgatggcgcggccgcc 7423
>gb|AC134563.5| Mus musculus BAC clone RP24-179M18 from chromosome 19, complete sequence Length = 163878 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 cagggctatgttggcaacaa 241 |||||||||||||||||||| Sbjct: 101130 cagggctatgttggcaacaa 101111
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 1347893 cggcgatggcgcggccgccg 1347912
>dbj|AK099525.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030L21, full insert sequence Length = 1099 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 312 cggcgatggcgcggccgccg 293
>dbj|AK062083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G01, full insert sequence Length = 1196 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 386 cggcgatggcgcggccgccg 367
>dbj|AK061542.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H09, full insert sequence Length = 1013 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 304 cggcgatggcgcggccgccg 285
>dbj|AK060684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F12, full insert sequence Length = 1037 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 904 ccggcgatggcgcggccgcc 885
>emb|CT025557.11| Mouse DNA sequence from clone RP23-356F21 on chromosome 13, complete sequence Length = 186496 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cctctccttctccctcctgt 47 |||||||||||||||||||| Sbjct: 114108 cctctccttctccctcctgt 114089
>dbj|AP003024.2| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2336M19, complete sequence Length = 39000 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 cctctccttctccctcctgtgcct 51 |||||||||||||||||| ||||| Sbjct: 13285 cctctccttctccctcctctgcct 13308
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 20692284 cggcgatggcgcggccgccg 20692265
>emb|AL607145.28| Mouse DNA sequence from clone RP23-230I5 on chromosome 4, complete sequence Length = 147896 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 tttcccagggaggggcctgg 103 |||||||||||||||||||| Sbjct: 56609 tttcccagggaggggcctgg 56628
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence Length = 227785 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctcagcatccagtcccacaccgtccagg 225 |||||||||| |||||||||||||||| Sbjct: 223755 ctcagcatccgctcccacaccgtccagg 223728
>gb|U84909.1|IPU84909 Ipomoea purpurea Imex16 chalcone synthase-A (CHS-A) gene, complete cds Length = 1565 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 902 cggcgatggcgcggccgccg 921
>gb|U84908.1|IPU84908 Ipomoea purpurea Imex19 chalcone synthase-A (CHS-A) gene, complete cds Length = 1565 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 902 cggcgatggcgcggccgccg 921
>gb|U84907.1|IPU84907 Ipomoea purpurea Imex22 chalcone synthase-A (CHS-A) gene, complete cds Length = 1565 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 cggcgatggcgcggccgccg 158 |||||||||||||||||||| Sbjct: 902 cggcgatggcgcggccgccg 921
>gb|AC069246.6| Homo sapiens chromosome 3 clone RP11-221A8 map 3p, complete sequence Length = 175121 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tgtacagttttctaatcata 315 |||||||||||||||||||| Sbjct: 29459 tgtacagttttctaatcata 29478
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 ccggcgatggcgcggccgcc 157 |||||||||||||||||||| Sbjct: 22774 ccggcgatggcgcggccgcc 22755 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,194,797 Number of Sequences: 3902068 Number of extensions: 4194797 Number of successful extensions: 114550 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114154 Number of HSP's gapped (non-prelim): 391 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)