ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50b07 |
|---|---|
| Clone Library Name | barley_pub |
>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I| Length = 601 Score = 34.3 bits (77), Expect = 0.12 Identities = 16/38 (42%), Positives = 23/38 (60%) Frame = +2 Query: 299 IAVDLSDESAYAVSWAVANYLRPGDAVILLHVRSTNVP 412 + +DLS ES +A WAV LR GD +I++ V + P Sbjct: 435 LTLDLSSESLHAAEWAVGILLRNGDTLIIVDVIECDDP 472
>TOP6B_AERPE (Q9YE64) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 565 Score = 30.8 bits (68), Expect = 1.4 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +2 Query: 308 DLSDESAYAVSWAVANYLRPGDAVILLHVRSTNVPY 415 D+S + +++W N P V+L+H+ ST VPY Sbjct: 411 DVSYKVVSSINWRQYNVDFPAPLVVLVHIASTKVPY 446
>TOP6B_HALSA (Q9HR31) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 804 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = +2 Query: 329 YAVSWAVANYLRPGDAVILLHVRSTNVPYGAD 424 Y +S + L G AVI++HV STNVP+ ++ Sbjct: 596 YNLSQPGGSGLPQGPAVIMVHVASTNVPFTSE 627
>CYB_SMIMU (Q35886) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_SMIMA (O20433) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLSTP 265
>CYB_SMIGA (Q9XP83) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_SMICR (Q35810) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLSTP 265
>CYB_SMIAR (Q9XP88) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_SARHA (Q35861) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_PLATE (Q35675) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_PLAMU (Q35532) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_PLAIN (Q35485) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_PLAGI (Q35459) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_PHATA (Q35673) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_NINYV (Q35196) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_NINTI (O20435) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_NINRI (Q35172) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_MURLO (Q35020) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTSW (Q33865) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTST (P92509) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTNA (Q33800) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTMI (O63534) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTME (Q33782) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTLE (O63537) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTGO (O63536) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTFL (Q33706) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>CYB_ANTBE (O63535) Cytochrome b| Length = 381 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPDS GDPD+ A P P Sbjct: 243 ALFSPDSLGDPDNFSPANPLNTP 265
>IMPX_YEAST (P32351) Sugar utilization regulatory protein IMP2| Length = 346 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +2 Query: 260 AAAPLGSAHRRIAIAVDLSDESAYAVSWAVANYLRPGDAVILLH 391 A A G+ R + DLS ES YA+++ + + GD V ++H Sbjct: 202 AGAEAGN-QRSFILYTDLSSESTYALTYLMGAAVNQGDTVYIVH 244
>CXA12_HUMAN (Q5T442) Gap junction alpha-12 protein (Connexin-47) (Cx47)| (Connexin-46.6) (Cx46.6) Length = 439 Score = 28.9 bits (63), Expect = 5.1 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = -3 Query: 104 GSPCESGEASASRLCLGAVGKGGEAAGRNGRLGK 3 G+ E+ EA A C AVG G+AAG G G+ Sbjct: 164 GAGEEAEEAGAEEACTKAVGADGKAAGTPGPTGQ 197
>SNX18_MOUSE (Q91ZR2) Sorting nexin-18 (Sorting nexin-associated Golgi protein| 1) Length = 614 Score = 28.9 bits (63), Expect = 5.1 Identities = 19/45 (42%), Positives = 20/45 (44%) Frame = -3 Query: 143 RGASQGPASR*WSGSPCESGEASASRLCLGAVGKGGEAAGRNGRL 9 RG S PA WS S L L VG+GG AGR RL Sbjct: 197 RGVSAPPAPSVWSQELGHGEPQPQSLLHLRQVGRGGLRAGRGVRL 241
>CYB_MAMPR (P92658) Cytochrome b| Length = 378 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALLSPDMLGDPDNYMPADPLNTP 265
>CYB_LOXAF (P24958) Cytochrome b| Length = 378 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALLSPDMLGDPDNYMPADPLNTP 265
>CYB_ELEMA (O47885) Cytochrome b| Length = 378 Score = 28.5 bits (62), Expect = 6.7 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALLSPDMLGDPDNYMPADPLNTP 265
>CYB_PTEBR (O78933) Cytochrome b| Length = 379 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALFSPDLLGDPDNYTPANPLNTP 265
>CYB_MONMN (Q678S3) Cytochrome b| Length = 379 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALFSPDLLGDPDNYTPANPLSTP 265
>CYB_AILME (Q33784) Cytochrome b| Length = 379 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +1 Query: 73 ALASPDSHGDPDHHRDAGPCEAP 141 AL SPD GDPD++ A P P Sbjct: 243 ALFSPDLLGDPDNYTPANPLSTP 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,379,437 Number of Sequences: 219361 Number of extensions: 353816 Number of successful extensions: 2171 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2150 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2171 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
