ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50b07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016476.1| Zea mays clone Contig309 mRNA sequence Length = 1258 Score = 280 bits (141), Expect = 4e-72 Identities = 222/249 (89%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| || | ||||||||| |||||| |||||||||||||| ||||| |||||||| Sbjct: 1111 gccgctggcggtggcgccgccgccggtgaaggcgccgaccccgcggcccccgccgccggc 1052 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 |||||| |||||||| |||||||| ||||||||| || ||| ||||| ||||| || || Sbjct: 1051 ctcgctgcagcccgagtccccgggggtcttcttctccgccgccgccgccgccgcgcccct 992 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 991 gggcaccgcccaccgccgcatcgccatcgccgtcgacctctccgacgagtccgcctacgc 932 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 931 cgtgcgctgggccgtcgccaactacctccgccccggggacgccgtcatcctgctccacgt 872 Query: 394 ccgctccac 402 ||| |||| Sbjct: 871 gcgccccac 863
>ref|XM_478654.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1330 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 91 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 150 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 151 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 210 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 211 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 270 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 271 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 330 Query: 394 ccgctccac 402 |||| |||| Sbjct: 331 ccgccccac 339
>ref|XM_478653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1352 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 136 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 195 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 196 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 255 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 256 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 315 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 316 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 375 Query: 394 ccgctccac 402 |||| |||| Sbjct: 376 ccgccccac 384
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 21844897 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 21844838 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 21844837 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 21844778 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 21844777 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 21844718 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 21844717 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 21844658 Query: 394 ccgctccac 402 |||| |||| Sbjct: 21844657 ccgccccac 21844649
>dbj|AK109507.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E04, full insert sequence Length = 1351 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 136 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 195 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 196 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 255 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 256 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 315 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 316 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 375 Query: 394 ccgctccac 402 |||| |||| Sbjct: 376 ccgccccac 384
>dbj|AK060720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F04, full insert sequence Length = 1330 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 91 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 150 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 151 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 210 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 211 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 270 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 271 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 330 Query: 394 ccgctccac 402 |||| |||| Sbjct: 331 ccgccccac 339
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 216 bits (109), Expect = 4e-53 Identities = 214/249 (85%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgcgggtgaaagcgccgaccccgcgcccccctccgccggc 213 |||||||| |||| ||||||||| |||||| |||||||||||||||||||| ||||||| Sbjct: 58573 gccgctggcggcggcgccgccgccggtgaaggcgccgaccccgcgcccccccacgccggc 58514 Query: 214 ctcgctccagcccgactccccgggcgtcttcttcaccaacgctgccgcagccgccccact 273 ||||| ||||| || |||||||| || |||||||| ||| || || |||||||| | Sbjct: 58513 gtcgctgcagccggagtccccgggggtgttcttcacggccgccgcggcggccgccccggt 58454 Query: 274 gggctccgcccaccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgc 333 || ||| | ||||||||||||||||||||||| || || |||||||||||||| ||||| Sbjct: 58453 cgggtcctcgcaccgccgcatcgccatcgccgttgacctctccgacgagtccgcgtacgc 58394 Query: 334 cgtaagctgggccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||| ||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct: 58393 cgtccgctgggccgtcgccaactacctccgccccggggacgccgttatactgctgcacgt 58334 Query: 394 ccgctccac 402 |||| |||| Sbjct: 58333 ccgccccac 58325
>ref|NM_191514.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 175 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 234 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 235 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 284
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 33194569 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 33194510 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 33194509 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 33194460 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccg 175 |||||||||||||||||||| Sbjct: 42244586 cgctggtggcgccgccgccg 42244605
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Minus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 131479 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 131420 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 131419 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 131370
>dbj|AK072280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C18, full insert sequence Length = 1337 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| |||||||||||||||||||| || |||||||||||||| |||||||| | ||| Sbjct: 425 caccggcgcatcgccatcgccgtcgacctctccgacgagtccgcgtacgccgtccggtgg 484 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgt 393 ||||| ||||||||||| ||||||||||||||| | ||||| ||||| Sbjct: 485 gccgtgcagaactacctccgccccggggacgccgtcgtgctcctccacgt 534
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 93.7 bits (47), Expect = 4e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 65475 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 65534 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccac 402 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 65535 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccac 65593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 93.7 bits (47), Expect = 4e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 24551293 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 24551352 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccac 402 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 24551353 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccac 24551411
>dbj|AK060312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C02, full insert sequence Length = 1118 Score = 93.7 bits (47), Expect = 4e-16 Identities = 101/119 (84%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 |||||||||||||||||||||||||| || |||||||||||||||| |||||| | ||| Sbjct: 259 caccgccgcatcgccatcgccgtcgacctctccgacgagtccgccttcgccgtcaagtgg 318 Query: 344 gccgtcgccaactacctccggcccggggacgccgtcatcctcctgcacgtccgctccac 402 |||| ||||||||||| || || ||||||||| | ||||| ||||||||| |||| Sbjct: 319 tccgtgcagaactacctccgcccgggcgacgccgtcgtgctcctccacgtccgccccac 377
>gb|BT017743.1| Zea mays clone EL01N0449E08.c mRNA sequence Length = 1322 Score = 79.8 bits (40), Expect = 7e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || | ||| Sbjct: 299 caccgtcgcatcgccatcgccgttgatctctccgacgagtccgccttcgcagtcaagtgg 358 Query: 344 gccgtcgccaactacctccggcccggggacgccgtc 379 ||||| |||||| |||| ||||||||||||||| Sbjct: 359 gccgtgcagaactacgtccgccccggggacgccgtc 394
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 63.9 bits (32), Expect = 4e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 284 caccgccgcatcgccatcgccgtcgatctgtccgacgagtccgcctacgccgtaagctgg 343 ||||| |||||||||||||||| ||||| |||||||||||||| ||| || | ||| Sbjct: 4866 caccgtcgcatcgccatcgccgctgatctcaacgacgagtccgccttcgcagtcaagtgg 4807 Query: 344 gccgtcgccaactacctccggcccggggacgccgtc 379 ||||| ||||||||||| ||||||||||||||| Sbjct: 4806 gccgtgcagaactacctccgccccggggacgccgtc 4771
>gb|AE005722.1| Caulobacter crescentus CB15 section 48 of 359 of the complete genome Length = 12112 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 152 ccgccgctggtggcgccgccgccgc 176 ||||||||||||||||||||||||| Sbjct: 3391 ccgccgctggtggcgccgccgccgc 3415
>gb|AY780887.1| Pseudomonas fluorescens strain B16 transcriptional regulator (pgpR), ornithine/acetylornithine aminotransferase (pgpA), putative cytoplasmic protein (pgpB), DNA-binding protein (pgpC), dipeptidyl aminopeptidase/acylaminoacyl-peptidase (pqqG), putative Fe-S oxidoreductase (pqqE), pyrroloquinoline quinone biosynthesis protein D (pqqD), pyrroloquinoline quinone biosynthesis protein C (pqqC), beta-lactamase superfamily I metal-dependent hydrolase (pqqB), pyrroloquinoline quinone biosynthesis protein A (pqqA), and secreted/periplasmic Zn-dependent peptidase (pqqF) genes, complete cds Length = 13361 Score = 48.1 bits (24), Expect = 0.023 Identities = 30/32 (93%) Strand = Plus / Plus Query: 306 tcgatctgtccgacgagtccgcctacgccgta 337 |||||||||||||||| |||||| |||||||| Sbjct: 2323 tcgatctgtccgacgattccgccgacgccgta 2354
>gb|AC167926.2| Mycosphaerella graminicola clone JGIBBWB-9A8, complete sequence Length = 40143 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 279 ccgcccaccgccgcatcgccatc 301 ||||||||||||||||||||||| Sbjct: 17250 ccgcccaccgccgcatcgccatc 17272
>ref|XM_310398.1| Anopheles gambiae str. PEST ENSANGP00000018930 (ENSANGG00000016441), partial mRNA Length = 383 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgc 176 ||||||||||||||||||||||| Sbjct: 321 gccgctggtggcgccgccgccgc 299
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 cgctggtggcgccgccgccgcg 177 |||||||||||||||||||||| Sbjct: 19948184 cgctggtggcgccgccgccgcg 19948163 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 ccgccgctggtggcgccgccgccgc 176 ||||||||| ||||||||||||||| Sbjct: 3936614 ccgccgctgatggcgccgccgccgc 3936590
>gb|U87832.1|OBU87832 Oat blue dwarf virus complete genome Length = 6509 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 cagcttctccccccttccccac 50 |||||||||||||||||||||| Sbjct: 1764 cagcttctccccccttccccac 1785
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 cgctggtggcgccgccgccgcg 177 |||||||||||||||||||||| Sbjct: 19874398 cgctggtggcgccgccgccgcg 19874377 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 ccgccgctggtggcgccgccgccgc 176 ||||||||| ||||||||||||||| Sbjct: 3936588 ccgccgctgatggcgccgccgccgc 3936564
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccgcg 177 |||||||||||||||||||||| Sbjct: 79076 cgctggtggcgccgccgccgcg 79097
>ref|NM_184909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 cgctggtggcgccgccgccgc 176 ||||||||||||||||||||| Sbjct: 270 cgctggtggcgccgccgccgc 250
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccgc 176 ||||||||||||||||||||| Sbjct: 31885052 cgctggtggcgccgccgccgc 31885072
>emb|AL591686.10| Human DNA sequence from clone RP11-561I11 on chromosome 1 Contains the 3' end of a novel gene (FLJ40773) and two novel genes, complete sequence Length = 175463 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 tttcttccagcagcttctccc 39 ||||||||||||||||||||| Sbjct: 24627 tttcttccagcagcttctccc 24607
>emb|AL353704.10| Human DNA sequence from clone RP11-551M15 on chromosome 13 Contains three novel genes, the 5' end of the ARHGEF7 gene for Rho guanine nucleotide exchange factor (GEF) 7 (KIAA0142) and three CpG islands, complete sequence Length = 117417 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 ttctccccccttccccactgc 53 ||||||||||||||||||||| Sbjct: 13270 ttctccccccttccccactgc 13250
>gb|AE005915.1| Caulobacter crescentus CB15 section 241 of 359 of the complete genome Length = 11464 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 cccgccgctggtggcgccgccgccg 175 ||||||||||||||||||| ||||| Sbjct: 9985 cccgccgctggtggcgccggcgccg 9961
>gb|AC092016.2| Homo sapiens chromosome 1 clone RP11-384I6, complete sequence Length = 86085 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 19 tttcttccagcagcttctccc 39 ||||||||||||||||||||| Sbjct: 83929 tttcttccagcagcttctccc 83909
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccgc 176 ||||||||||||||||||||| Sbjct: 31975568 cgctggtggcgccgccgccgc 31975588
>gb|AC092340.5| Homo sapiens chromosome 16 clone RP11-24M10, complete sequence Length = 146524 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 ttcttccagcagcttctcccc 40 ||||||||||||||||||||| Sbjct: 46500 ttcttccagcagcttctcccc 46520
>gb|AC009142.13| Homo sapiens chromosome 16 clone RP11-543N12, complete sequence Length = 195848 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 ttcttccagcagcttctcccc 40 ||||||||||||||||||||| Sbjct: 11721 ttcttccagcagcttctcccc 11701
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 ccgccgctggtggcgccgccgccgc 176 ||||||||| ||||||||||||||| Sbjct: 98590 ccgccgctgatggcgccgccgccgc 98566
>gb|AC152002.2| Ornithorhynchus anatinus chromosome UNK clone OABb-387A1, complete sequence Length = 131214 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 32 cttctccccccttccccactgctcc 56 ||||||||||||||||| ||||||| Sbjct: 6779 cttctccccccttcccctctgctcc 6803
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccgc 176 ||||||||||||||||||||| Sbjct: 86305 cgctggtggcgccgccgccgc 86325
>ref|XM_471560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2922 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgcg 177 |||||||||| ||||||||||||| Sbjct: 422 gccgctggtgccgccgccgccgcg 399
>gb|DQ217215.1| Taeniopygia guttata clone 0058P0008A06 ATPase H+ transporting lysosomal 21kDa V0 subunit variant 2-like mRNA, complete sequence Length = 1001 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 ctcccgccgctggtggcgccgccgccgc 176 |||||||||| |||| |||||||||||| Sbjct: 48 ctcccgccgccggtgccgccgccgccgc 75
>gb|DQ217214.1| Taeniopygia guttata clone 0058P0008C08 ATPase H+ transporting lysosomal 21kDa V0 subunit variant 2-like mRNA, complete sequence Length = 1001 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 ctcccgccgctggtggcgccgccgccgc 176 |||||||||| |||| |||||||||||| Sbjct: 48 ctcccgccgccggtgccgccgccgccgc 75
>gb|DQ217213.1| Taeniopygia guttata clone 0058P0008B08 ATPase H+ transporting lysosomal 21kDa V0 subunit variant 2-like mRNA, complete sequence Length = 1001 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 ctcccgccgctggtggcgccgccgccgc 176 |||||||||| |||| |||||||||||| Sbjct: 48 ctcccgccgccggtgccgccgccgccgc 75
>gb|DQ217211.1| Taeniopygia guttata clone 0058P0033C06 ATPase H+ transporting lysosomal 21kDa V0 subunit variant 2-like mRNA, complete sequence Length = 1020 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 149 ctcccgccgctggtggcgccgccgccgc 176 |||||||||| |||| |||||||||||| Sbjct: 67 ctcccgccgccggtgccgccgccgccgc 94
>ref|NM_001031407.1| Gallus gallus proteasome (prosome, macropain) subunit, alpha type, 5 (PSMA5), mRNA Length = 1047 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 ccgaccccgcgcccccctccgccg 211 ||||||||||||||||| |||||| Sbjct: 61 ccgaccccgcgccccccgccgccg 84
>ref|NM_189337.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 843 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccg 175 |||||||||||||||||||| Sbjct: 537 cgctggtggcgccgccgccg 556
>ref|XM_473029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ccgctggtggcgccgccgcc 174 |||||||||||||||||||| Sbjct: 406 ccgctggtggcgccgccgcc 425
>gb|BT017384.1| Zea mays clone EL01N0326F04.c mRNA sequence Length = 706 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ccgccgctggtggcgccgcc 171 |||||||||||||||||||| Sbjct: 414 ccgccgctggtggcgccgcc 433
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cttcttcaccaacgctgccg 260 |||||||||||||||||||| Sbjct: 2703413 cttcttcaccaacgctgccg 2703432
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 105894 ggtggcgccgccgccgcggg 105913
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 gtcttccatttcttccagcagctt 34 ||||||||||||| |||||||||| Sbjct: 2018416 gtcttccatttctgccagcagctt 2018393
>emb|AL731555.10| Human DNA sequence from clone RP11-157J13 on chromosome 10 Contains a pseudogene similar to part of guanine nucleotide binding protein (G protein) alpha inhibiting activity (GNAI2) and a CpG island, complete sequence Length = 178389 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cccccttccccactgctccc 57 |||||||||||||||||||| Sbjct: 115591 cccccttccccactgctccc 115610
>emb|AL096843.11|HSA262A13 Human DNA sequence from clone RP11-262A13 on chromosome 22, complete sequence Length = 128155 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgccccactgggctccgccc 284 |||||||||||||||||||| Sbjct: 40051 cgccccactgggctccgccc 40070
>emb|Z00018.1|RBATP R.blasticus atp operon coding for the 5 subunits of F1-ATPase and 8URFs Length = 12368 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 ccgccgctggtggcgccgccgccg 175 |||||||||||||||||| ||||| Sbjct: 1680 ccgccgctggtggcgccggcgccg 1703
>emb|AL662995.2|OSJN00202 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0032D24, complete sequence Length = 132465 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcg 177 |||||||||| ||||||||||||| Sbjct: 6391 gccgctggtgccgccgccgccgcg 6414
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcg 177 |||||||||| ||||||||||||| Sbjct: 157249 gccgctggtgccgccgccgccgcg 157272
>emb|AJ720305.1| Gallus gallus mRNA for hypothetical protein, clone 14i9 Length = 1047 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 ccgaccccgcgcccccctccgccg 211 ||||||||||||||||| |||||| Sbjct: 61 ccgaccccgcgccccccgccgccg 84
>emb|CR386956.1| Gallus gallus finished cDNA, clone ChEST102f7 Length = 769 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 ccgaccccgcgcccccctccgccg 211 ||||||||||||||||| |||||| Sbjct: 72 ccgaccccgcgccccccgccgccg 95
>ref|NG_004818.1| Gallus gallus cadherin-related neuronal receptor 10 pseudogene (CNRV10) Length = 98944 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 27435 ggtggcgccgccgccgcggg 27454
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ccgctggtggcgccgccgcc 174 |||||||||||||||||||| Sbjct: 24782060 ccgctggtggcgccgccgcc 24782079 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 gccgctggtggcgccgccgccgcg 177 |||||||||| ||||||||||||| Sbjct: 12332365 gccgctggtgccgccgccgccgcg 12332388
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 20909668 ggtggcgccgccgccgcggg 20909649
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccg 175 |||||||||||||||||||| Sbjct: 16543 cgctggtggcgccgccgccg 16562
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccg 175 |||||||||||||||||||| Sbjct: 117784 cgctggtggcgccgccgccg 117803
>gb|AF282602.1|AF282602 Litoria subglandulosa strain SAMA_R51051 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial gene for mitochondrial product Length = 645 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 catttcttccagcagcttctcccc 40 ||||||||||||||||||| |||| Sbjct: 35 catttcttccagcagcttcacccc 58
>gb|AF282601.1|AF282601 Litoria subglandulosa strain SAMA_R51052 NADH dehydrogenase subunit 4 (ND4) gene, partial cds; mitochondrial gene for mitochondrial product Length = 645 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 catttcttccagcagcttctcccc 40 ||||||||||||||||||| |||| Sbjct: 35 catttcttccagcagcttcacccc 58
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 36592 ggtggcgccgccgccgcggg 36573
>dbj|AK119892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A10, full insert sequence Length = 3415 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 2244 ggtggcgccgccgccgcggg 2225
>dbj|AK111851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150C23, full insert sequence Length = 3975 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 ggtggcgccgccgccgcggg 179 |||||||||||||||||||| Sbjct: 2250 ggtggcgccgccgccgcggg 2231
>dbj|AK072960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K08, full insert sequence Length = 2247 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 cgctggtggcgccgccgccg 175 |||||||||||||||||||| Sbjct: 848 cgctggtggcgccgccgccg 867
>dbj|AK072677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136A15, full insert sequence Length = 1549 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 gccgctggtggcgccgccgccgcg 177 |||||||||| ||||||||||||| Sbjct: 315 gccgctggtgccgccgccgccgcg 292
>dbj|AK061559.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D02, full insert sequence Length = 967 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ccgctggtggcgccgccgcc 174 |||||||||||||||||||| Sbjct: 556 ccgctggtggcgccgccgcc 575
>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10, complete sequence Length = 173023 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 attttccaagtcttccattt 21 |||||||||||||||||||| Sbjct: 93956 attttccaagtcttccattt 93937
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ccgctggtggcgccgccgcc 174 |||||||||||||||||||| Sbjct: 43776 ccgctggtggcgccgccgcc 43795
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 gccatcgccgtcgatctgtccgac 319 ||||||||||||| |||||||||| Sbjct: 1350423 gccatcgccgtcgctctgtccgac 1350400 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,498,166 Number of Sequences: 3902068 Number of extensions: 3498166 Number of successful extensions: 98694 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96799 Number of HSP's gapped (non-prelim): 1882 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
