Clone Information

BLAST Search Result

Clone Name	bart50b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	359	5e-96
2	gb\|AC129008.1\| Genomic sequence for Oryza sativa, Nipponbare str...	359	5e-96
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	359	5e-96
4	dbj\|AK064707.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	359	5e-96
5	ref\|NM_194925.1\| Oryza sativa (japonica cultivar-group) unknown ...	111	2e-21
6	gb\|AC091724.3\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
7	gb\|AC122145.1\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	111	2e-21
9	dbj\|AK108770.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	2e-21
10	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	111	2e-21
11	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
12	dbj\|AP006067.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.5
13	ref\|XM_526649.1\| PREDICTED: Pan troglodytes similar to cytochrom...	40	5.9
14	gb\|AC099404.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.9
15	gb\|AC108763.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.9
16	gb\|AY343323.1\| Homo sapiens cytochrome P450 mRNA, complete cds	40	5.9
17	ref\|XM_584572.2\| PREDICTED: Bos taurus similar to Collagen alpha...	40	5.9
18	ref\|NM_183075.2\| Homo sapiens cytochrome P450, family 2, subfami...	40	5.9
19	gb\|BC012027.1\| Homo sapiens cytochrome P450, family 2, subfamily...	40	5.9
20	emb\|CT009556.7\| Mouse DNA sequence from clone RP23-87H19 on chro...	40	5.9
21	gb\|AC124399.4\| Mus musculus BAC clone RP24-351I17 from chromosom...	40	5.9
22	gb\|CP000319.1\| Nitrobacter hamburgensis X14, complete genome	40	5.9
23	emb\|AL939119.1\|SCO939119 Streptomyces coelicolor A3(2) complete ...	40	5.9
24	emb\|AL939112.1\|SCO939112 Streptomyces coelicolor A3(2) complete ...	40	5.9
25	gb\|AC009812.17\| Homo sapiens chromosome 8, clone RP11-48B3, comp...	40	5.9
26	gb\|AC103579.10\| Mus Musculus Strain C57BL6/J Chromosome 14 BAC C...	40	5.9
27	dbj\|AP007174.1\| Aspergillus oryzae RIB40 genomic DNA, SC103	40	5.9
28	gb\|AC096564.3\| Homo sapiens BAC clone RP11-286E11 from 4, comple...	40	5.9
29	gb\|AE017282.2\| Methylococcus capsulatus str. Bath, complete genome	40	5.9
30	gb\|AE004564.1\| Pseudomonas aeruginosa PAO1, section 125 of 529 o...	40	5.9
31	gb\|AC034114.17\| Homo sapiens chromosome 8, clone RP11-775E10, co...	40	5.9
32	gb\|AC133585.11\| Mus musculus chromosome 14, clone RP24-456G16, c...	40	5.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  359 bits (181), Expect = 5e-96
 Identities = 280/313 (89%)
 Strand = Plus / Minus

                                                                           
Query: 130     tcctcccttcccacgccacagcgacggcgccaaccggcatgcttgagcgggaaaccaagc 189
               |||||||||  |||||||| |||||| |||| || |||| | |  ||||||| || ||||
Sbjct: 7652273 tcctcccttggcacgccacggcgacgtcgccgacgggcacgatacagcgggagacgaagc 7652214

                                                                           
Query: 190     agcaaatcttggcgagcatcccgccgcactggcaggagaaccccgtgttgttcctgacgt 249
               |||| ||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 7652213 agcagatcctggccagcatcccgccgcactggcaggagaacccggtgctgttcctgacgt 7652154

                                                                           
Query: 250     cgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccgtgccgggcgccggcg 309
               ||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 7652153 cgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccgcgccgggcgccggcg 7652094

                                                                           
Query: 310     gcctcggagccgacttctgctacgtcgagattctcgacaccaccgagccgggcgcggagg 369
               ||||||| ||||||||||||||||| ||| | ||||||||| | || || ||||||||||
Sbjct: 7652093 gcctcggcgccgacttctgctacgtggaggtgctcgacacctcggatcccggcgcggagg 7652034

                                                                           
Query: 370     ggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcg 429
               |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 7652033 ggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtgaacacgtgctcgctcg 7651974

                            
Query: 430     tgttctcgtggaa 442
               |||||||||||||
Sbjct: 7651973 tgttctcgtggaa 7651961

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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score =  359 bits (181), Expect = 5e-96
 Identities = 280/313 (89%)
 Strand = Plus / Plus

                                                                         
Query: 130   tcctcccttcccacgccacagcgacggcgccaaccggcatgcttgagcgggaaaccaagc 189
             |||||||||  |||||||| |||||| |||| || |||| | |  ||||||| || ||||
Sbjct: 63017 tcctcccttggcacgccacggcgacgtcgccgacgggcacgatacagcgggagacgaagc 63076

                                                                         
Query: 190   agcaaatcttggcgagcatcccgccgcactggcaggagaaccccgtgttgttcctgacgt 249
             |||| ||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 63077 agcagatcctggccagcatcccgccgcactggcaggagaacccggtgctgttcctgacgt 63136

                                                                         
Query: 250   cgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccgtgccgggcgccggcg 309
             ||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 63137 cgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccgcgccgggcgccggcg 63196

                                                                         
Query: 310   gcctcggagccgacttctgctacgtcgagattctcgacaccaccgagccgggcgcggagg 369
             ||||||| ||||||||||||||||| ||| | ||||||||| | || || ||||||||||
Sbjct: 63197 gcctcggcgccgacttctgctacgtggaggtgctcgacacctcggatcccggcgcggagg 63256

                                                                         
Query: 370   ggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcg 429
             |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 63257 ggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtgaacacgtgctcgctcg 63316

                          
Query: 430   tgttctcgtggaa 442
             |||||||||||||
Sbjct: 63317 tgttctcgtggaa 63329

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  359 bits (181), Expect = 5e-96
 Identities = 280/313 (89%)
 Strand = Plus / Minus

                                                                           
Query: 130     tcctcccttcccacgccacagcgacggcgccaaccggcatgcttgagcgggaaaccaagc 189
               |||||||||  |||||||| |||||| |||| || |||| | |  ||||||| || ||||
Sbjct: 7650108 tcctcccttggcacgccacggcgacgtcgccgacgggcacgatacagcgggagacgaagc 7650049

                                                                           
Query: 190     agcaaatcttggcgagcatcccgccgcactggcaggagaaccccgtgttgttcctgacgt 249
               |||| ||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 7650048 agcagatcctggccagcatcccgccgcactggcaggagaacccggtgctgttcctgacgt 7649989

                                                                           
Query: 250     cgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccgtgccgggcgccggcg 309
               ||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 7649988 cgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccgcgccgggcgccggcg 7649929

                                                                           
Query: 310     gcctcggagccgacttctgctacgtcgagattctcgacaccaccgagccgggcgcggagg 369
               ||||||| ||||||||||||||||| ||| | ||||||||| | || || ||||||||||
Sbjct: 7649928 gcctcggcgccgacttctgctacgtggaggtgctcgacacctcggatcccggcgcggagg 7649869

                                                                           
Query: 370     ggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcg 429
               |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 7649868 ggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtgaacacgtgctcgctcg 7649809

                            
Query: 430     tgttctcgtggaa 442
               |||||||||||||
Sbjct: 7649808 tgttctcgtggaa 7649796

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>dbj|AK064707.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A07, full
           insert sequence
          Length = 1269

 Score =  359 bits (181), Expect = 5e-96
 Identities = 280/313 (89%)
 Strand = Plus / Plus

                                                                       
Query: 130 tcctcccttcccacgccacagcgacggcgccaaccggcatgcttgagcgggaaaccaagc 189
           |||||||||  |||||||| |||||| |||| || |||| | |  ||||||| || ||||
Sbjct: 163 tcctcccttggcacgccacggcgacgtcgccgacgggcacgatacagcgggagacgaagc 222

                                                                       
Query: 190 agcaaatcttggcgagcatcccgccgcactggcaggagaaccccgtgttgttcctgacgt 249
           |||| ||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 223 agcagatcctggccagcatcccgccgcactggcaggagaacccggtgctgttcctgacgt 282

                                                                       
Query: 250 cgccgtccggcaagtacgcggcgcacttcatgcgcagccagaccgtgccgggcgccggcg 309
           ||||||| ||||||||| ||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct: 283 cgccgtcgggcaagtacacggcgtacttcctgcgcagccagaccgcgccgggcgccggcg 342

                                                                       
Query: 310 gcctcggagccgacttctgctacgtcgagattctcgacaccaccgagccgggcgcggagg 369
           ||||||| ||||||||||||||||| ||| | ||||||||| | || || ||||||||||
Sbjct: 343 gcctcggcgccgacttctgctacgtggaggtgctcgacacctcggatcccggcgcggagg 402

                                                                       
Query: 370 ggcggagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacacctgcgcgctcg 429
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 403 ggcggagcgtgtgggagtcggagtgcctggcggtgagcaccgtgaacacgtgctcgctcg 462

                        
Query: 430 tgttctcgtggaa 442
           |||||||||||||
Sbjct: 463 tgttctcgtggaa 475

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>ref|NM_194925.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNAa0034B05.10), mRNA
          Length = 1125

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 231 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
           |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 157 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 216

                                                           
Query: 291 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
           ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 217 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 264



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 374 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
           ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 321 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 365

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>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0004E08, complete sequence
          Length = 158294

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                         
Query: 231   cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
             |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 33196 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 33255

                                                             
Query: 291   accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
             ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 33256 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 33303



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 374   gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
             ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 33360 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 33404

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>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                         
Query: 231   cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
             |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 98851 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 98910

                                                             
Query: 291   accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
             ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 98911 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 98958



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 374   gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
             ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 99015 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 99059

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 231     cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
               |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 3442067 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 3442126

                                                               
Query: 291     accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
               ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3442127 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 3442174



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 374     gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
               ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 3442231 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 3442275

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>dbj|AK108770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H05, full
           insert sequence
          Length = 1436

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 231 cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
           |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 231 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 290

                                                           
Query: 291 accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
           ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 291 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 338



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                        
Query: 374 gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
           ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 395 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 439

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  111 bits (56), Expect = 2e-21
 Identities = 95/108 (87%)
 Strand = Plus / Plus

                                                                           
Query: 231     cccgtgttgttcctgacgtcgccgtccggcaagtacgcggcgcacttcatgcgcagccag 290
               |||||| ||||||| || |||||||||||||||||||||||| ||||| |||||   || 
Sbjct: 3441988 cccgtgctgttcctcacctcgccgtccggcaagtacgcggcgtacttcgtgcgctcgcac 3442047

                                                               
Query: 291     accgtgccgggcgccggcggcctcggagccgacttctgctacgtcgag 338
               ||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct: 3442048 accgtccccggcgccggcgggctcggcgccgacttctgctacgtcgag 3442095



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 374     gagcgtgtgggagtcggagtgcttggcggtgagcaccgtgaacac 418
               ||||||||||||||||||||||  | |||||||||| ||||||||
Sbjct: 3442152 gagcgtgtgggagtcggagtgccggccggtgagcacggtgaacac 3442196

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 375      agcgtgtgggagtcggagtgc 395
                |||||||||||||||||||||
Sbjct: 20753473 agcgtgtgggagtcggagtgc 20753493



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 249      tcgccgtccggcaagtacgcggcg 272
                ||||||||||||||| ||||||||
Sbjct: 19105371 tcgccgtccggcaagaacgcggcg 19105394

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>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0569E11
          Length = 157319

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 375   agcgtgtgggagtcggagtgc 395
             |||||||||||||||||||||
Sbjct: 28502 agcgtgtgggagtcggagtgc 28522

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>ref|XM_526649.1| PREDICTED: Pan troglodytes similar to cytochrome P450, family 2,
           subfamily U, polypeptide 1; cytochrome P450 P450TEC
           (LOC471267), mRNA
          Length = 1533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ccgggcgccggcggcctcgg 316
           ||||||||||||||||||||
Sbjct: 153 ccgggcgccggcggcctcgg 134

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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 249    tcgccgtccggcaagtacgcggcg 272
              ||||||||||||||| ||||||||
Sbjct: 150656 tcgccgtccggcaagaacgcggcg 150679

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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 249   tcgccgtccggcaagtacgcggcg 272
             ||||||||||||||| ||||||||
Sbjct: 35330 tcgccgtccggcaagaacgcggcg 35353

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>gb|AY343323.1| Homo sapiens cytochrome P450 mRNA, complete cds
          Length = 3544

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ccgggcgccggcggcctcgg 316
           ||||||||||||||||||||
Sbjct: 36  ccgggcgccggcggcctcgg 17

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>ref|XM_584572.2| PREDICTED: Bos taurus similar to Collagen alpha 3(V) chain
           precursor (LOC507881), mRNA
          Length = 4890

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 17  cagagacaccagaaccaact 36
           ||||||||||||||||||||
Sbjct: 689 cagagacaccagaaccaact 708

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>ref|NM_183075.2| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1
           (CYP2U1), mRNA
          Length = 4760

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ccgggcgccggcggcctcgg 316
           ||||||||||||||||||||
Sbjct: 80  ccgggcgccggcggcctcgg 61

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>gb|BC012027.1| Homo sapiens cytochrome P450, family 2, subfamily U, polypeptide 1,
           mRNA (cDNA clone IMAGE:4706746), complete cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 297 ccgggcgccggcggcctcgg 316
           ||||||||||||||||||||
Sbjct: 56  ccgggcgccggcggcctcgg 37

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>emb|CT009556.7| Mouse DNA sequence from clone RP23-87H19 on chromosome 14, complete
              sequence
          Length = 227368

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 64     aaacccaaaccccagcagccatgg 87
              |||||||||||| |||||||||||
Sbjct: 143084 aaacccaaacccaagcagccatgg 143107

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>gb|AC124399.4| Mus musculus BAC clone RP24-351I17 from chromosome 10, complete
             sequence
          Length = 179668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   accaagcagcaaatcttggc 202
             ||||||||||||||||||||
Sbjct: 65919 accaagcagcaaatcttggc 65900

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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     tgacgtcgccgtccggcaag 263
               ||||||||||||||||||||
Sbjct: 3588099 tgacgtcgccgtccggcaag 3588118

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>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    tgccgggcgccggcggcctc 314
              ||||||||||||||||||||
Sbjct: 134081 tgccgggcgccggcggcctc 134062

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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    gccgggcgccggcggcctcg 315
              ||||||||||||||||||||
Sbjct: 151137 gccgggcgccggcggcctcg 151156

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>gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, complete sequence
          Length = 155405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tgtttgtcctcccttcccac 143
              ||||||||||||||||||||
Sbjct: 139119 tgtttgtcctcccttcccac 139100

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>gb|AC103579.10| Mus Musculus Strain C57BL6/J Chromosome 14 BAC Clone RP23-145J23,
              Complete Sequence, complete sequence
          Length = 227361

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 64     aaacccaaaccccagcagccatgg 87
              |||||||||||| |||||||||||
Sbjct: 104955 aaacccaaacccaagcagccatgg 104932

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>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103
          Length = 1282697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     caactttagaagttgcatct 51
              ||||||||||||||||||||
Sbjct: 202147 caactttagaagttgcatct 202128

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>gb|AC096564.3| Homo sapiens BAC clone RP11-286E11 from 4, complete sequence
          Length = 163317

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    ccgggcgccggcggcctcgg 316
              ||||||||||||||||||||
Sbjct: 145085 ccgggcgccggcggcctcgg 145066

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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    gccgggcgcggaggggcgga 375
              ||||||||||||||||||||
Sbjct: 277635 gccgggcgcggaggggcgga 277654

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>gb|AE004564.1| Pseudomonas aeruginosa PAO1, section 125 of 529 of the complete
            genome
          Length = 10515

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 145  ccacagcgacggcgccaaccggca 168
            ||||| ||||||||||||||||||
Sbjct: 7483 ccacatcgacggcgccaaccggca 7506

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>gb|AC034114.17| Homo sapiens chromosome 8, clone RP11-775E10, complete sequence
          Length = 154210

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    tgtttgtcctcccttcccac 143
              ||||||||||||||||||||
Sbjct: 125494 tgtttgtcctcccttcccac 125513

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>gb|AC133585.11| Mus musculus chromosome 14, clone RP24-456G16, complete sequence
          Length = 174807

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   tgccatgtgcctcttgctgg 123
             ||||||||||||||||||||
Sbjct: 82321 tgccatgtgcctcttgctgg 82340


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,718,875
Number of Sequences: 3902068
Number of extensions: 2718875
Number of successful extensions: 54867
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54579
Number of HSP's gapped (non-prelim): 288
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result