Clone Information

BLAST Search Result

Clone Name	bart50b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit...	167	1e-41
2	PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit...	144	9e-35
3	PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit...	144	9e-35
4	PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit...	142	3e-34
5	PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit...	142	3e-34
6	RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MP...	140	1e-33
7	RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11	138	6e-33
8	RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Pr...	136	2e-32
9	RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11	134	7e-32
10	YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III	112	5e-25
11	CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-...	61	1e-09
12	CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-...	57	1e-08
13	CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-...	57	1e-08
14	CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-...	57	2e-08
15	CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-...	57	2e-08
16	CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-...	57	2e-08
17	CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4...	57	2e-08
18	CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4...	55	5e-08
19	CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	55	7e-08
20	CSN5_USTMA (Q4P804) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	54	1e-07
21	CSN5_CANAL (Q59PG6) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	50	2e-06
22	CSN5_EMENI (Q5BBF1) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	50	2e-06
23	CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-...	50	3e-06
24	CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	49	5e-06
25	CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	49	5e-06
26	CSN5_YARLI (Q6C703) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	48	1e-05
27	CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	48	1e-05
28	CSN5_CRYNE (Q5KAB0) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	47	2e-05
29	CSN5_ASPFU (Q4WZP2) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	46	3e-05
30	CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	46	4e-05
31	CSN5_CANGA (Q6FT36) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	40	0.003
32	CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)	39	0.004
33	IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 s...	32	0.48
34	GCH1_RALSO (Q8XZK8) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)	31	1.1
35	DNAJ_BRECH (Q9LCQ4) Chaperone protein dnaJ	30	3.1
36	BRCC3_HUMAN (P46736) BRCA1/BRCA2-containing complex subunit 3	29	4.0
37	VGLC_BHV1C (P14378) Glycoprotein GIII precursor	29	4.0
38	AF9_HUMAN (P42568) Protein AF-9 (ALL1 fused gene from chromosome...	29	5.3
39	BRCC3_MOUSE (P46737) BRCA1/BRCA2-containing complex subunit 3	29	5.3
40	TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau	28	6.9
41	ATG5_MAGGR (Q525E4) Autophagy protein 5	28	6.9
42	SC5A6_HUMAN (Q9Y289) Sodium-dependent multivitamin transporter (...	28	9.0

>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 308

 Score =  167 bits (422), Expect = 1e-41
 Identities = 87/102 (85%), Positives = 89/102 (87%), Gaps = 1/102 (0%)
 Frame = +2

Query: 125 MERLQRIFGAGG-MGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 301
           MERLQRIFGAGG +G            EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF
Sbjct: 1   MERLQRIFGAGGGLGHASPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 60

Query: 302 VDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           VD+YTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG
Sbjct: 61  VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 102

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>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (MAD1)
          Length = 310

 Score =  144 bits (363), Expect = 9e-35
 Identities = 79/103 (76%), Positives = 83/103 (80%), Gaps = 2/103 (1%)
 Frame = +2

Query: 125 MERLQRIFGA-GGMGQXXXXXX-XXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 298
           M+RL R+ G   G+GQ            EQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60

Query: 299 FVDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           FVDDYTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTG
Sbjct: 61  FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTG 103

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>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S
           proteasome-associated PAD1 homolog 1)
          Length = 310

 Score =  144 bits (363), Expect = 9e-35
 Identities = 79/103 (76%), Positives = 83/103 (80%), Gaps = 2/103 (1%)
 Frame = +2

Query: 125 MERLQRIFGA-GGMGQXXXXXX-XXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 298
           M+RL R+ G   G+GQ            EQVYISSLALLKMLKHGRAGVPMEVMGLMLGE
Sbjct: 1   MDRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGE 60

Query: 299 FVDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           FVDDYTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTG
Sbjct: 61  FVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTG 103

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>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S proteasome
           regulatory complex subunit p37B) (Yippee-interacting
           protein 5)
          Length = 308

 Score =  142 bits (359), Expect = 3e-34
 Identities = 75/101 (74%), Positives = 80/101 (79%)
 Frame = +2

Query: 125 MERLQRIFGAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 304
           M+RL R+ GA                EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV
Sbjct: 1   MDRLLRLGGAMPQAAPPTDAPVVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 60

Query: 305 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           DDYTV+V+DVFAMPQ+GTGVSVEAVD VFQ  MLDMLKQTG
Sbjct: 61  DDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTG 101

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>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 312

 Score =  142 bits (358), Expect = 3e-34
 Identities = 77/105 (73%), Positives = 79/105 (75%), Gaps = 4/105 (3%)
 Frame = +2

Query: 125 MERLQRIFGAGG----MGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLML 292
           MER  R+ G GG     G            E VYISSLALLKMLKHGRAGVPMEVMGLML
Sbjct: 1   MERFLRLGGLGGNLGTFGANPQDSNQVDTSETVYISSLALLKMLKHGRAGVPMEVMGLML 60

Query: 293 GEFVDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           GEFVDDYTV V+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTG
Sbjct: 61  GEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTG 105

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>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)|
          Length = 306

 Score =  140 bits (353), Expect = 1e-33
 Identities = 75/101 (74%), Positives = 79/101 (78%)
 Frame = +2

Query: 125 MERLQRIFGAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 304
           MERLQR+     +G            E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFV
Sbjct: 1   MERLQRLMMNSKVGSADTGRDDTK--ETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFV 58

Query: 305 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           DDYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTG
Sbjct: 59  DDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTG 99

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>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11|
          Length = 306

 Score =  138 bits (347), Expect = 6e-33
 Identities = 74/101 (73%), Positives = 79/101 (78%)
 Frame = +2

Query: 125 MERLQRIFGAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 304
           MERLQR+     +G            E VYISS+ALLKMLKHGRAGVPMEVMGLMLGEFV
Sbjct: 1   MERLQRLMMNTKVG--AADANKDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFV 58

Query: 305 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           D+YTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTG
Sbjct: 59  DEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDMLKQTG 99

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>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)|
          Length = 308

 Score =  136 bits (342), Expect = 2e-32
 Identities = 74/102 (72%), Positives = 78/102 (76%), Gaps = 1/102 (0%)
 Frame = +2

Query: 125 MERLQRIFGAGGMGQXXXXXX-XXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF 301
           ME LQR+     MG             E VYISSLALLKML+HGR G PMEVMGLMLGEF
Sbjct: 1   MESLQRLLQGARMGTGMMGDQPLVDNSECVYISSLALLKMLRHGRHGTPMEVMGLMLGEF 60

Query: 302 VDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           VDD+TVRVVDVFAMPQSGTGVSVEAVD VFQ NM+DMLKQTG
Sbjct: 61  VDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTG 102

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>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11|
          Length = 311

 Score =  134 bits (338), Expect = 7e-32
 Identities = 72/104 (69%), Positives = 79/104 (75%), Gaps = 3/104 (2%)
 Frame = +2

Query: 125 MERLQRIF---GAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLG 295
           M+RLQR+     +  +G            E VYISSLALLKMLKH RAGVPMEVMGLMLG
Sbjct: 1   MDRLQRLMMSQRSNMIGAAATEMPLDDTKETVYISSLALLKMLKHSRAGVPMEVMGLMLG 60

Query: 296 EFVDDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           +FVD+YTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTG
Sbjct: 61  DFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTG 104

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>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III|
          Length = 319

 Score =  112 bits (279), Expect = 5e-25
 Identities = 58/101 (57%), Positives = 70/101 (69%)
 Frame = +2

Query: 125 MERLQRIFGAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFV 304
           M+RL R        Q           E V ISSLALLKML+H R+G+P+EVMGLMLG+FV
Sbjct: 1   MDRLIRSLLMNQNKQATDKLDHPDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFV 60

Query: 305 DDYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTG 427
           DDYT+ V DVFAMPQSGT V+VE+VD V+QT  +D+LK  G
Sbjct: 61  DDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVG 101

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>CSN5_DROME (Q9XZ58) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (Dch5) (JAB1 homolog)
          Length = 327

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 376
           + + IS+LALLKM+ H R+G  +EVMGLMLG+ V+D T+ V+D FA+P  G  T V+ +A
Sbjct: 50  KDIKISALALLKMVMHARSGGTLEVMGLMLGK-VEDNTMIVMDAFALPVEGTETRVNAQA 108

Query: 377 VDHVFQTNMLDMLKQTG 427
             + + T  ++  K+ G
Sbjct: 109 QAYEYMTAYMEAAKEVG 125

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>CSN5_MOUSE (O35864) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1) (Kip1 C-terminus-interacting
           protein 2)
          Length = 333

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = +2

Query: 215 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEAVDHV 388
           IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  G  T V+ +A  + 
Sbjct: 56  ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYE 114

Query: 389 FQTNMLDMLKQTG 427
           +    ++  KQ G
Sbjct: 115 YMAAYIENAKQVG 127

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>CSN5_HUMAN (Q92905) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (SGN5) (Jun activation
           domain-binding protein 1)
          Length = 333

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = +2

Query: 215 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEAVDHV 388
           IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  G  T V+ +A  + 
Sbjct: 56  ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYE 114

Query: 389 FQTNMLDMLKQTG 427
           +    ++  KQ G
Sbjct: 115 YMAAYIENAKQVG 127

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>CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = +2

Query: 215 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEAVDHV 388
           +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  G  T V+ +A  + 
Sbjct: 57  VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYE 115

Query: 389 FQTNMLDMLKQTG 427
           +    ++  KQ G
Sbjct: 116 YMAAYIENAKQVG 128

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>CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 332

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = +2

Query: 215 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEAVDHV 388
           +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  G  T V+ +A  + 
Sbjct: 55  VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYE 113

Query: 389 FQTNMLDMLKQTG 427
           +    ++  KQ G
Sbjct: 114 YMAAYIENAKQVG 126

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>CSN5_BRARE (Q6PC30) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5)
          Length = 334

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
 Frame = +2

Query: 215 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEAVDHV 388
           +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  G  T V+ +A  + 
Sbjct: 55  LSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYE 113

Query: 389 FQTNMLDMLKQTG 427
           +    ++  KQ G
Sbjct: 114 YMAAYIENAKQVG 126

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>CSN5A_ARATH (Q9FVU9) COP9 signalosome complex subunit 5a (EC 3.4.-.-)|
           (Signalosome subunit 5a) (Jun activation domain-binding
           homolog 2)
          Length = 358

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 30/64 (46%), Positives = 43/64 (67%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           ++V IS+LALLKM+ H R+G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D
Sbjct: 57  KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQD 115

Query: 383 HVFQ 394
             ++
Sbjct: 116 DAYE 119

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>CSN5B_ARATH (Q8LAZ7) COP9 signalosome complex subunit 5b (EC 3.4.-.-)|
           (Signalosome subunit 5b) (Jun activation domain-binding
           homolog 1)
          Length = 357

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           ++V+IS+LALLKM+ H R+G  +E+MGLM G+   D T+ V+D FA+P  GT   V A  
Sbjct: 57  KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQS 115

Query: 383 HVFQ 394
             ++
Sbjct: 116 DAYE 119

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>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 469

 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 376
           ++ YISSLAL KM  H ++G  +EVMG+M G+ + + ++ V+DV+ +P  G  T V+ +A
Sbjct: 61  KKTYISSLALCKMSVHAKSGGAIEVMGMMTGKIIKN-SIIVMDVYPLPVEGTETRVNAQA 119

Query: 377 VDHVFQTNMLDMLKQTG 427
             + +    L+ LKQ G
Sbjct: 120 EGYEYMVQYLENLKQVG 136

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>CSN5_USTMA (Q4P804) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 406

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF-VDDYTVRVVDVFAMPQSGTGVSVEAV 379
           ++V IS++AL+KM+ H R+G   E+MGLM G+  V++ T+ V+D FA+P  GT   V A 
Sbjct: 59  QKVRISAVALIKMVMHARSGGIYEIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQ 118

Query: 380 DHVFQ--TNMLDMLKQTG 427
           +  ++     LD  K+ G
Sbjct: 119 NEAYEYMVQYLDHSKEVG 136

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>CSN5_CANAL (Q59PG6) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 213

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/70 (35%), Positives = 45/70 (64%)
 Frame = +2

Query: 212 YISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVDHVF 391
           YISSLAL+KM  H + G  +E+MG+++G+ +  +++ V+D + +P  GT   V A +  +
Sbjct: 76  YISSLALMKMCTHAQTGGSIEIMGMLVGK-ISGHSIIVMDTYRLPVEGTETRVNAQNEAY 134

Query: 392 QTNMLDMLKQ 421
            T M++ L +
Sbjct: 135 -TYMVEYLTE 143

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>CSN5_EMENI (Q5BBF1) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 335

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           + V IS++ALLKM+ H R+G  +EVMGLM G ++   T  V D F +P  GT   V A D
Sbjct: 49  KSVRISAVALLKMVMHARSGGSLEVMGLMQG-YILPNTFVVTDAFRLPVEGTETRVNAQD 107

Query: 383 HV--FQTNMLDMLKQTG 427
               +  + L   ++ G
Sbjct: 108 EANEYMVSYLQSCREAG 124

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>CSN5_CAEEL (P91001) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
           (Signalosome subunit 5) (JAB1 homolog)
          Length = 368

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 40/64 (62%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           +Q+ IS++ALLKM  H + G  +E+MGL+ G  +D  +  ++DVFA+P  GT   V A  
Sbjct: 54  KQIKISAIALLKMTMHAKRGGNLEIMGLLQGR-IDANSFIILDVFALPVEGTETRVNAQA 112

Query: 383 HVFQ 394
             ++
Sbjct: 113 QAYE 116

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>CSN5_SCHPO (O94454) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 299

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +2

Query: 209 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
           V IS++ALLKML+H   G+P+EVMG + G+ V+  ++ ++D FA+P  GT   V A
Sbjct: 35  VKISAVALLKMLRHVSQGMPLEVMGYVQGK-VEGASLIILDSFALPVEGTETRVNA 89

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>CSN5_NEUCR (Q7RXX8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 336

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 24/58 (41%), Positives = 38/58 (65%)
 Frame = +2

Query: 209 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           V ISS+A++KM+ H R+G  +EVMG+M G +++  T+ + D + +P  GT   V A D
Sbjct: 44  VRISSVAMIKMVMHARSGGNLEVMGMMQG-YIEGSTMVITDAYRLPVEGTETRVNAQD 100

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>CSN5_YARLI (Q6C703) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 354

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
 Frame = +2

Query: 209 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVDH- 385
           V +SS+AL+KM  H R+G  +EVMG+M G+ + + T  V+D + +P  GT   V A    
Sbjct: 56  VLVSSIALVKMAMHARSGGAIEVMGMMTGKILPN-TFVVMDCYPLPVEGTETRVNAQQEG 114

Query: 386 -VFQTNMLDMLKQTG 427
             F    L  LK  G
Sbjct: 115 IEFMVEYLQGLKDVG 129

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>CSN5_GIBZE (Q4IJM4) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 340

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           + V IS+ AL+KM  H R+G  +EVMGLM G +    T  V D F +P  GT   V A D
Sbjct: 50  KHVRISATALIKMTMHARSGGNLEVMGLMQG-YTQGDTFIVTDAFRLPVEGTETRVNAQD 108

Query: 383 HV--FQTNMLDMLKQTG 427
               +    LD+ +  G
Sbjct: 109 EANEYIVEYLDLCRAQG 125

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>CSN5_CRYNE (Q5KAB0) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 371

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = +2

Query: 209 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
           V IS++AL+KM+ H R+G   E+MG+M G+ V D T  ++DV A+P  GT   V A
Sbjct: 51  VKISAVALIKMVTHARSGGIYEIMGIMYGK-VRDGTFWIMDVAALPVQGTETRVNA 105

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>CSN5_ASPFU (Q4WZP2) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 334

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
           + + IS++AL+KM  H R+G  +EVMGLM G  + + T  V D F +P  GT   V A
Sbjct: 49  KSIRISAVALIKMTMHARSGGSLEVMGLMQGYILPE-TFVVTDAFRLPVEGTETRVNA 105

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>CSN5_ASHGO (Q75E19) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 420

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 30/97 (30%), Positives = 49/97 (50%)
 Frame = +2

Query: 86  PSSRNQIEQPREAMERLQRIFGAGGMGQXXXXXXXXXXXEQVYISSLALLKMLKHGRAGV 265
           PSSR+Q+   +E  ++    F                  ++  +S+LA +K+L+H   G 
Sbjct: 50  PSSRSQVRVQQELWKQDPTYF------------------QKAALSALACMKILRHAFDGG 91

Query: 266 PMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
            MEV+G++LG +V D  + VVD + +P  GT   V A
Sbjct: 92  DMEVLGMLLG-YVQDEMIVVVDSYRLPVEGTETRVNA 127

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>CSN5_CANGA (Q6FT36) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 465

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
           + V +S LA  K+L H   G  +EVMG++LG  + + T  + D F +P  GT   V A
Sbjct: 72  QNVLLSKLACSKILCHATKGGNIEVMGMLLGNVIGN-TFVIFDCFELPVEGTETMVNA 128

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>CSN5_KLULA (Q6CRJ8) COP9 signalosome complex subunit 5 (EC 3.4.-.-)|
          Length = 373

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEA 376
           ++  IS LA  KML H   G  +EVMG+++G   +D  V V D +++P  GT   V A
Sbjct: 64  QKCLISRLATTKMLSHAVDGGDIEVMGMLVGYTSNDMIV-VKDCYSLPVQGTETRVNA 120

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>IF33_ARATH (Q9C5Z2) Eukaryotic translation initiation factor 3 subunit 3|
           (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
          Length = 337

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 209 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVDHV 388
           V I  LA+LK++KH +   P  V G +LG  V    + V + F  P       +EA    
Sbjct: 25  VQIEGLAVLKIIKHCKEFSPTLVTGQLLGLDVGS-VLEVTNCFPFPVRDDDEEIEADGAN 83

Query: 389 FQTNMLDMLKQ 421
           +Q  M+  L++
Sbjct: 84  YQLEMMRCLRE 94

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>GCH1_RALSO (Q8XZK8) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 209

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 415 EHVEHVGLEDVVDGLDTDPCPALRHGEDVDHPDRVVVDELAEH 287
           + V  +    ++DG D DP  AL HG +    D V++  +A H
Sbjct: 55  QRVRELWQRRLLDGYDIDPAEALGHGFEDPRRDMVIIRSIAVH 97

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>DNAJ_BRECH (Q9LCQ4) Chaperone protein dnaJ|
          Length = 375

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -1

Query: 124 GFSRLFDLVPGGGGRLANP 68
           GF  +FD+  GGGGR ANP
Sbjct: 88  GFGDIFDMFFGGGGRRANP 106

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>BRCC3_HUMAN (P46736) BRCA1/BRCA2-containing complex subunit 3|
          Length = 316

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTGVSVEAVD 382
           + V++ S A L  L H  +    EVMGL +GE  DD   R    FA   +      E VD
Sbjct: 10  QAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDD--TRSDSKFAYTGTEMRTVAEKVD 67

Query: 383 HV 388
            V
Sbjct: 68  AV 69

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>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 33  AGSSSRSVEKDAGFAKRPPPPGTKSNNREKPWSDCSGSSAPAGWA 167
           AG++SR      G   RPP P +K+  +E+ W  C   +  A +A
Sbjct: 109 AGNASRDGRPSGGGRPRPPRP-SKAPPKERKWMLCEREAVAASYA 152

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>AF9_HUMAN (P42568) Protein AF-9 (ALL1 fused gene from chromosome 9 protein)|
           (Myeloid/lymphoid or mixed-lineage leukemia translocated
           to chromosome 3 protein)
          Length = 568

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 18  RVAVEAGSSSRSVEKDAGFAKRPPPPGTKSNNRE 119
           RV++  GS S S    +     PPPP  K+NN +
Sbjct: 444 RVSLSDGSDSESSSASSPLHHEPPPPLLKTNNNQ 477

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>BRCC3_MOUSE (P46737) BRCA1/BRCA2-containing complex subunit 3|
          Length = 291

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 203 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDD 310
           + V++ S A L  L H  +    EVMGL +GE  DD
Sbjct: 10  QAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDD 45

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>TAU_HYLLA (Q5YCV9) Microtubule-associated protein tau|
          Length = 775

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 78  KRPPPPGTKSNNREKPWS-DCSGSSAP 155
           +RPPP G KS   E P S D SG S+P
Sbjct: 508 RRPPPAGPKSERGEPPKSGDRSGYSSP 534

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>ATG5_MAGGR (Q525E4) Autophagy protein 5|
          Length = 314

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -1

Query: 184 RVRRRLAHPAGAEDPLQSLHGFSRLFDLVPGGGGRL-ANPA-SFSTLRLLLPASTATRIP 11
           R+  RL +P+    P++  H   R++    GGGG   A PA SF  ++ L+P  TA RIP
Sbjct: 200 RINARLLNPS---TPIK--HVPLRIYIPSSGGGGAGGATPAGSFRVMQTLVPPRTANRIP 254

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>SC5A6_HUMAN (Q9Y289) Sodium-dependent multivitamin transporter (Na(+)-dependent|
           multivitamin transporter)
          Length = 635

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 119 LSVVRFGSWRRGALGKPGVFFYXXXXASGFYCDPDPWI 6
           L+V+  GS + G LG+           SGF  DPDP++
Sbjct: 215 LAVIIVGSAKVGGLGRVWAVASQHGRISGFELDPDPFV 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,394,098
Number of Sequences: 219361
Number of extensions: 909742
Number of successful extensions: 3702
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3690
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result