ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein) 56 3e-08

>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)|
          Length = 262

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 38/80 (47%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +2

Query: 11  MEDESSTQSYQGAEA-HQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 178
           MEDE STQSYQG EA  QVEVTDR                      VTGM          
Sbjct: 1   MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60

Query: 179 -XXXXXDGEKKETLFSKLHR 235
                 DGEKKETLFSKLHR
Sbjct: 61  KKEEHEDGEKKETLFSKLHR 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,664,603
Number of Sequences: 219361
Number of extensions: 76822
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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