Clone Name | bart50a08 |
---|---|
Clone Library Name | barley_pub |
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 31.2 bits (69), Expect = 0.63 Identities = 21/72 (29%), Positives = 31/72 (43%) Frame = +2 Query: 29 MARLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPAG 208 M+ T + P GGG LE ++ + P AV++ DD+S A P LP P Sbjct: 197 MSGARTASTPTPPQTGGG----LEPQANGETPQVAVIVRPDDRSQGAIIADRPGLPGPEH 252 Query: 209 ENIVLSHGAPTP 244 +P+P Sbjct: 253 SPSESQPSSPSP 264
>PCDG3_PANTR (Q5DRB7) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDG3_HUMAN (Q9Y5H0) Protocadherin gamma A3 precursor (PCDH-gamma-A3)| Length = 932 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++L T SD PP + ++ + DQ+D A ++ PALPT + L+ + P Sbjct: 529 KLLVTASDSGNPPLSSNVSLNLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Frame = +2 Query: 29 MARLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP-- 202 M+ T + P GG LE + + P AV++ DD+S AA P LP P Sbjct: 204 MSGARTASTPTPPQTGGS----LEPQPNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEH 259 Query: 203 -AGENIVLSHGAPTP 244 G S +PTP Sbjct: 260 SPGTESQPSSPSPTP 274
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/72 (27%), Positives = 32/72 (44%) Frame = +2 Query: 29 MARLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPAG 208 M+ T++ P GGG +E ++ + P AV++ DD+S A P LP P Sbjct: 1 MSGARTVSTPTPPQTGGG----VEPQANGETPQVAVIVRSDDRSQGAIIGGRPGLPGPEH 56 Query: 209 ENIVLSHGAPTP 244 +P+P Sbjct: 57 SPSESQPSSPSP 68
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/52 (36%), Positives = 30/52 (57%) Frame = -3 Query: 177 TSAAASD*SSWVRRTALGGPWSSEVVSRTRQLPPPRREGSSTARVASRAIVA 22 T+AA + ++ VRRTA G +S+VVS T R E + + +V +A+ A Sbjct: 386 TAAALDELTATVRRTAAGARQASDVVSTT------RGEATHSGQVVHQAVSA 431
>DNAK_XANOR (Q5H186) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 641 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 S+ GG RV+E + D+ P+ V T+D + A A+ P Sbjct: 17 SIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNP 62
>DNAK_XANC5 (Q3BVB8) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 641 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 S+ GG RV+E + D+ P+ V T+D + A A+ P Sbjct: 17 SIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNP 62
>DNAK_XANAC (Q8PMB0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 641 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 S+ GG RV+E + D+ P+ V T+D + A A+ P Sbjct: 17 SIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNP 62
>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989| Length = 198 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -3 Query: 129 LGGPWSSEVVSRTRQLPPPRREGS 58 LG S+ +VSRT LP PR+EGS Sbjct: 14 LGSVSSAVIVSRTLGLPDPRQEGS 37
>QUEF_XANOR (Q5GV34) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)| Length = 271 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%) Frame = +2 Query: 59 LPSLRG---GGSCRVLETTSDDQGPPNAVLLTQDDQ 157 LP + G G S L+ + DD GPPNA LT Q Sbjct: 126 LPPIDGVGDGESIDALDVSIDDYGPPNAAYLTAQAQ 161
>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)| (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related mesenchymal modulator) (CReMM) (Chromatin remodeling factor CHROM1) (Peroxisomal proliferator-activated receptor A-inter Length = 2897 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 152 DQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLPSH 265 D AA + + P++PTP G + H T M ++ H Sbjct: 2302 DSPGAATEYSEPSVPTPPGAGVKEEHDQSTQMSKVKKH 2339
>PCDG8_HUMAN (Q9Y5G5) Protocadherin gamma A8 precursor (PCDH-gamma-A8)| Length = 932 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +2 Query: 89 RVLETTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPAGENIVLS 226 ++L T SD PP + ++ DQ+D A ++ PALPT + L+ Sbjct: 529 QLLVTASDSGDPPLSSNMSLSLFVLDQNDNAPEILYPALPTDGSTGVELA 578
>ATG5_MAGGR (Q525E4) Autophagy protein 5| Length = 314 Score = 28.5 bits (62), Expect = 4.1 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Frame = +2 Query: 20 PATMARLATLAVLLPSLRGG--------GSCRVLETTSDDQGPPNAVLLTQDDQSDAAAD 175 P+T + L + +PS GG GS RV++T + N + T Sbjct: 208 PSTPIKHVPLRIYIPSSGGGGAGGATPAGSFRVMQTLVPPR-TANRIPQTLGPTLRDLLP 266 Query: 176 VTLPALPTPAGENIVLSHGAPTP 244 V P+ P N+VL HGAP P Sbjct: 267 VLFPSSRDPVLANVVL-HGAPVP 288
>CDD_YEAST (Q06549) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 142 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +2 Query: 35 RLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPAGEN 214 R A + VL+ R G C V+ S+DQ + Q D + L + + Sbjct: 64 RSAMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRS 123 Query: 215 IVLSHGAPTPMLRLPSH 265 V++ G PM PSH Sbjct: 124 KVMTMGELLPMAFGPSH 140
>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein| (PDCD6-interacting protein) (ALG-2-interacting protein 1) (Hp95) Length = 868 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 140 LTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPMLRLP 259 L +D Q A + + P++PTPA ++ APTP P Sbjct: 705 LLKDLQQSIAREPSAPSIPTPAYQSSPAGGHAPTPPTPAP 744
>PCDGA_PANTR (Q5DRC1) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>PCDGA_HUMAN (Q9Y5H3) Protocadherin gamma A10 precursor (PCDH-gamma-A10)| Length = 936 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 534 MQVTASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 588
>PCDG9_HUMAN (Q9Y5G4) Protocadherin gamma A9 precursor (PCDH-gamma-A9)| Length = 932 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%) Frame = +2 Query: 95 LETTSDDQGPPN-----AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 ++ T+ D G P ++ L DQ+D A ++ PALPT + L+ + P Sbjct: 530 MQVTASDSGSPPLSSNVSLRLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCL_ECTHA (P42516) 4-coumarate--CoA ligase (EC 6.2.1.12) (4CL)| (4-coumaroyl-CoA synthase) (Fragment) Length = 391 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +2 Query: 188 ALPTPAGENIVLSHGAPTPMLRLPS 262 ALP G ++ SH APT + R P+ Sbjct: 155 ALPRALGSTVIESHAAPTALFREPA 179
>COBQ_COREF (Q8FP85) Cobyric acid synthase| Length = 493 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -1 Query: 236 VHHGSARYFRRPGWAEPEGSRQQ 168 VHHG R+ W E EG+R++ Sbjct: 389 VHHGQVRHHGEQTWIEGEGARRE 411
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 164 AAADVTLPALPTPAGENIVLSHGAPTP 244 AA VT PA P PA + GAP P Sbjct: 331 AAPGVTAPAAPAPAAPGAPAAPGAPAP 357
>LIPA_PSEFL (P26504) Lipase precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 449 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +2 Query: 17 VPATMARLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAA 169 +P ++A L+T LPS G G RVLE+ +Q ++ ++ SD A Sbjct: 299 LPFSIANLSTWVSHLPSAYGDGMTRVLESGFYEQMTRDSTIILCPTWSDPA 349
>DNAK_XANCP (Q8PAK9) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 642 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 ++ GG RV+E + D+ P+ V T+D + A A+ P Sbjct: 17 AIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNP 62
>DNAK_XANC8 (Q4UT11) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 642 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/46 (28%), Positives = 22/46 (47%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 ++ GG RV+E + D+ P+ V T+D + A A+ P Sbjct: 17 AIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNP 62
>PCDG6_PANTR (Q5DRB4) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 101 TTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 T SD PP + ++ DQ+D A ++ PALPT + L+ + P Sbjct: 533 TASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>PCDG6_HUMAN (Q9Y5G7) Protocadherin gamma A6 precursor (PCDH-gamma-A6)| Length = 932 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 101 TTSDDQGPPNAVLLTQD----DQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 T SD PP + ++ DQ+D A ++ PALPT + L+ + P Sbjct: 533 TASDSGDPPLSSNVSLSLFVLDQNDNAPEILYPALPTDGSTGVELAPRSAEP 584
>SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neuroglycan)| Length = 442 Score = 27.3 bits (59), Expect = 9.0 Identities = 24/77 (31%), Positives = 29/77 (37%) Frame = +2 Query: 20 PATMARLATLAVLLPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPT 199 P AT A PS TT+D + LL + A A T PA+P+ Sbjct: 175 PTMATAPATAATTAPSTPAAPPATA--TTADIRTTGIQGLLPLPLTTAATAKATTPAVPS 232 Query: 200 PAGENIVLSHGAPTPML 250 P L APTP L Sbjct: 233 PPTTVTTLDTEAPTPRL 249
>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor protein| DCC) Length = 1447 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 65 SLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALP 196 SL GG + + T DD G V+ +++ A+A++T+ P Sbjct: 288 SLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP 331
>HMIN_DROME (P05527) Homeobox protein invected| Length = 576 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 59 LPSLRGGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHG 232 LP ++ G S +V E D+Q L +D++ + D+ L + EN VLS G Sbjct: 48 LPLVQPGNSPQVREEEEDEQTECEEQLNIEDEEVEEEHDLDLEDPASCCSENSVLSVG 105
>DNAK_PSEHT (Q3IC08) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/42 (28%), Positives = 19/42 (45%) Frame = +2 Query: 77 GGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTP 202 GG RV+E D+ P+ + TQD ++ A+ P Sbjct: 21 GGKARVIENAEGDRTTPSVIAYTQDGETLVGQPAKRQAVTNP 62
>BCCP_SHIFL (P0ABE1) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 131 AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPML 250 A ++ Q QS+AAA T+P++ PA I H +PM+ Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEI-SGHIVRSPMV 88
>BCCP_ECOLI (P0ABD8) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 131 AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPML 250 A ++ Q QS+AAA T+P++ PA I H +PM+ Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEI-SGHIVRSPMV 88
>BCCP_ECOL6 (P0ABD9) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 131 AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPML 250 A ++ Q QS+AAA T+P++ PA I H +PM+ Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEI-SGHIVRSPMV 88
>BCCP_ECO57 (P0ABE0) Biotin carboxyl carrier protein of acetyl-CoA carboxylase| (BCCP) Length = 156 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 131 AVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTPML 250 A ++ Q QS+AAA T+P++ PA I H +PM+ Sbjct: 50 APMMQQPAQSNAAAPATVPSMEAPAAAEI-SGHIVRSPMV 88
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +2 Query: 122 PPNAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHGAPTP 244 PP+A L + + ++ +LPTP GE L GAP P Sbjct: 516 PPSANLPSASGRPQQTGGNSVSSLPTPTGE--ALPDGAPPP 554
>SYH_AZOSE (Q5P7B4) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 438 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/53 (33%), Positives = 25/53 (47%) Frame = +2 Query: 74 GGGSCRVLETTSDDQGPPNAVLLTQDDQSDAAADVTLPALPTPAGENIVLSHG 232 GGGS + +D G P AV++ D+ A +V L L P G+ V G Sbjct: 368 GGGSFKSQMKKADASGAPVAVVIGDDEA--ATGEVGLKPLRGPGGQQRVALDG 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,402,303 Number of Sequences: 219361 Number of extensions: 600866 Number of successful extensions: 2133 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 2069 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2131 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)