ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
2gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome... 210 3e-51
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
4dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic D... 210 3e-51
5gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 62 2e-06
6gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 58 3e-05
7gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 52 0.002
8gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 50 0.006
9ref|XM_463993.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.097
10gb|AE012372.1| Xanthomonas campestris pv. campestris str. ATCC 3... 46 0.097
11gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 46 0.097
12emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 44 0.39
13dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 44 0.39
14gb|AE011917.1| Xanthomonas axonopodis pv. citri str. 306, secti... 44 0.39
15gb|AC010768.10| Homo sapiens chromosome 11, clone RP11-58K22, co... 44 0.39
16gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 44 0.39
17gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.5
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
19dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20ref|XM_530793.1| PREDICTED: Pan troglodytes LOC461754 (LOC461754... 40 6.0
21ref|NM_187658.1| Oryza sativa (japonica cultivar-group), predic... 40 6.0
22gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.0
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
24gb|AC161245.2| Mus musculus BAC clone RP24-394N21 from chromosom... 40 6.0
25gb|BC065996.1| Mus musculus cDNA clone MGC:90018 IMAGE:5689710, ... 40 6.0
26gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, compl... 40 6.0
27gb|BC011288.1| Mus musculus cDNA clone IMAGE:3586451, **** WARNI... 40 6.0
28gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.0
29gb|AY309087.1|AY309087S1 Chlamydomonas reinhardtii PF2 (PF2) gen... 40 6.0
30emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.0
31dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.0
32gb|BC114036.1| Bos taurus cDNA clone IMAGE:8017628, containing f... 40 6.0
33dbj|AK163229.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 6.0
34dbj|AK160804.1| Mus musculus 17 days embryo head cDNA, RIKEN ful... 40 6.0
35gb|AF275549.3|AF275549 Mus musculus ubiquitin-associated protein... 40 6.0
36dbj|AK009596.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 6.0
37dbj|AK028670.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 6.0
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.0
39dbj|AK028477.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 6.0
40dbj|AK076078.1| Mus musculus 11 days embryo whole body cDNA, RIK... 40 6.0
41dbj|AK033121.1| Mus musculus 15 days embryo male testis cDNA, RI... 40 6.0
42dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 6.0
44dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.0
45emb|X90765.2|TARIBPROT Thermus aquaticus rps8, rpl6, rpl18, rps5... 40 6.0
46dbj|AK108704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
47gb|AY106892.1| Zea mays PCO104142 mRNA sequence 40 6.0
48gb|BC083594.1| Rattus norvegicus ubiquitin-associated protein 1,... 40 6.0
49ref|NM_001012190.1| Rattus norvegicus ubiquitin-associated prote... 40 6.0
50gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.0
51ref|NM_023305.2| Mus musculus ubiquitin-associated protein 1 (Ub... 40 6.0
52emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chro... 40 6.0
53gb|AC161596.2| Mus musculus BAC clone RP23-477K6 from chromosome... 40 6.0
54gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0 
>dbj|AK073645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052F06, full
           insert sequence
          Length = 1205

 Score =  214 bits (108), Expect = 2e-52
 Identities = 195/224 (87%)
 Strand = Plus / Plus

                                                                       
Query: 222 ctgctgaggctcaacgacctccgcgacaaccccggcgcgacgcagcagaagacgcgcaag 281
           |||||| |||||||||||||  | ||||| || || |||  | |||||||||| || |||
Sbjct: 246 ctgctgcggctcaacgacctgagggacaatccgggggcgcggaagcagaagacccggaag 305

                                                                       
Query: 282 ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
           ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct: 306 ggccgagggatcggctccgggaagggcaagacggctggccgcggccacaaggggcagaag 365

                                                                       
Query: 342 gcgcgcggcaccgctcggttcggcttcgagggtggccagaccccgctgcgccgccgtctc 401
           ||||| ||||||||  | |||||||||||||| |||||||||||||| || ||||| |||
Sbjct: 366 gcgcggggcaccgccagattcggcttcgagggcggccagaccccgctccgtcgccgcctc 425

                                                       
Query: 402 ccccgacgcggcttcaagaaccgcttctcactcacgttccagcc 445
           ||||| ||||||||||||||||||||||| || ||||| |||||
Sbjct: 426 ccccgtcgcggcttcaagaaccgcttctctctgacgtttcagcc 469
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>gb|AY360387.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0003M24,
              complete sequence
          Length = 150085

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Minus

                                                                          
Query: 222    ctgctgaggctcaacgacctccgcgacaaccccggcgcgacgcagcagaagacgcgcaag 281
              |||||| |||||||||||||  | ||||| || || |||  | |||||||||| || |||
Sbjct: 117770 ctgctgcggctcaacgacctgagggacaatccgggggcgcggaagcagaagacccggaag 117711

                                                                          
Query: 282    ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
              ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct: 117710 ggccgagggatcggctccgggaagggcaagacggctggccgcggccacaaggggcagaag 117651

                                                                          
Query: 342    gcgcgcggcaccgctcggttcggcttcgagggtggccagaccccgctgcgccgccgtctc 401
              ||||| ||||||||  | |||||||||||||| |||||||||||||| || ||||| |||
Sbjct: 117650 gcgcggggcaccgccagattcggcttcgagggcggccagaccccgctccgtcgccgcctc 117591

                                                    
Query: 402    ccccgacgcggcttcaagaaccgcttctcactcacgtt 439
              ||||| ||||||||||||||||||||||| || |||||
Sbjct: 117590 ccccgtcgcggcttcaagaaccgcttctctctgacgtt 117553
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                            
Query: 222      ctgctgaggctcaacgacctccgcgacaaccccggcgcgacgcagcagaagacgcgcaag 281
                |||||| |||||||||||||  | ||||| || || |||  | |||||||||| || |||
Sbjct: 13065681 ctgctgcggctcaacgacctgagggacaatccgggggcgcggaagcagaagacccggaag 13065740

                                                                            
Query: 282      ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
                ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct: 13065741 ggccgagggatcggctccgggaagggcaagacggctggccgcggccacaaggggcagaag 13065800

                                                                            
Query: 342      gcgcgcggcaccgctcggttcggcttcgagggtggccagaccccgctgcgccgccgtctc 401
                ||||| ||||||||  | |||||||||||||| |||||||||||||| || ||||| |||
Sbjct: 13065801 gcgcggggcaccgccagattcggcttcgagggcggccagaccccgctccgtcgccgcctc 13065860

                                                      
Query: 402      ccccgacgcggcttcaagaaccgcttctcactcacgtt 439
                ||||| ||||||||||||||||||||||| || |||||
Sbjct: 13065861 ccccgtcgcggcttcaagaaccgcttctctctgacgtt 13065898
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>dbj|AP006481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone: B1100F03
          Length = 139217

 Score =  210 bits (106), Expect = 3e-51
 Identities = 190/218 (87%)
 Strand = Plus / Plus

                                                                         
Query: 222   ctgctgaggctcaacgacctccgcgacaaccccggcgcgacgcagcagaagacgcgcaag 281
             |||||| |||||||||||||  | ||||| || || |||  | |||||||||| || |||
Sbjct: 46201 ctgctgcggctcaacgacctgagggacaatccgggggcgcggaagcagaagacccggaag 46260

                                                                         
Query: 282   ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
             ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct: 46261 ggccgagggatcggctccgggaagggcaagacggctggccgcggccacaaggggcagaag 46320

                                                                         
Query: 342   gcgcgcggcaccgctcggttcggcttcgagggtggccagaccccgctgcgccgccgtctc 401
             ||||| ||||||||  | |||||||||||||| |||||||||||||| || ||||| |||
Sbjct: 46321 gcgcggggcaccgccagattcggcttcgagggcggccagaccccgctccgtcgccgcctc 46380

                                                   
Query: 402   ccccgacgcggcttcaagaaccgcttctcactcacgtt 439
             ||||| ||||||||||||||||||||||| || |||||
Sbjct: 46381 ccccgtcgcggcttcaagaaccgcttctctctgacgtt 46418
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                           
Query: 285     cgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaaggcg 344
               ||||| |||||||| || ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 2963975 cgcggcatcggctcgggcaagggcaagaccgccggccgcggccagaagggccagaaggcg 2963916

                  
Query: 345     cgc 347
               |||
Sbjct: 2963915 cgc 2963913
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                           
Query: 282     ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
               |||||||| |||||||||||   |||||||||||| || ||||| |||||||| ||||||
Sbjct: 3572434 ggccgcggtatcggctccggcctgggcaagacggctggtcgcggtcacaagggtcagaag 3572375

                    
Query: 342     gcgcg 346
                ||||
Sbjct: 3572374 tcgcg 3572370
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 308     caagacggcggggcgcgggcacaagggccagaag 341
               ||||||||||||||| || |||||||||||||||
Sbjct: 1956806 caagacggcggggcgtggccacaagggccagaag 1956773
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 282     ggccgcgggatcggctccgggaagggcaagacggcggggcgcgggcacaagggccagaag 341
               |||||||| |||||||||||   ||||||||| || || ||||| |||||||| ||||||
Sbjct: 3470525 ggccgcggtatcggctccggcctgggcaagaccgccggtcgcggtcacaagggtcagaag 3470466

                    
Query: 342     gcgcg 346
                ||||
Sbjct: 3470465 tcgcg 3470461
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>ref|XM_463993.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 903

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 389 gcgccgccgtctcccccgacgcg 411
           |||||||||||||||||||||||
Sbjct: 35  gcgccgccgtctcccccgacgcg 57
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>gb|AE012372.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 280 of
             460 of the complete genome
          Length = 10591

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 380   gaccccgctgcgccgccgtctcc 402
             |||||||||||||||||||||||
Sbjct: 10472 gaccccgctgcgccgccgtctcc 10450
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 380     gaccccgctgcgccgccgtctcc 402
               |||||||||||||||||||||||
Sbjct: 1814409 gaccccgctgcgccgccgtctcc 1814431
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 381     accccgctgcgccgccgtctcc 402
               ||||||||||||||||||||||
Sbjct: 3329904 accccgctgcgccgccgtctcc 3329883
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 381     accccgctgcgccgccgtctcc 402
               ||||||||||||||||||||||
Sbjct: 3548921 accccgctgcgccgccgtctcc 3548900
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>gb|AE011917.1| Xanthomonas axonopodis pv. citri str. 306,  section 295 of 469 of the
            complete genome
          Length = 11013

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 381  accccgctgcgccgccgtctcc 402
            ||||||||||||||||||||||
Sbjct: 8667 accccgctgcgccgccgtctcc 8646
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>gb|AC010768.10| Homo sapiens chromosome 11, clone RP11-58K22, complete sequence
          Length = 192391

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 123   ctcctccccgcccctggccagc 144
             ||||||||||||||||||||||
Sbjct: 15760 ctcctccccgcccctggccagc 15781
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 381     accccgctgcgccgccgtctcc 402
               ||||||||||||||||||||||
Sbjct: 3546773 accccgctgcgccgccgtctcc 3546752
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 294    ggctccgggaagggcaagacggcggggcgcgggcacaagggccagaaggcgcg 346
              ||||| || ||||||||||| || || ||||||  ||||||||||||| ||||
Sbjct: 317123 ggctcgggcaagggcaagaccgccggccgcgggatcaagggccagaagtcgcg 317175
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 389     gcgccgccgtctcccccgacg 409
               |||||||||||||||||||||
Sbjct: 1560844 gcgccgccgtctcccccgacg 1560864
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0576F08
          Length = 135314

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 389    gcgccgccgtctcccccgacg 409
              |||||||||||||||||||||
Sbjct: 124265 gcgccgccgtctcccccgacg 124285
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>ref|XM_530793.1| PREDICTED: Pan troglodytes LOC461754 (LOC461754), mRNA
          Length = 1917

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  ggcgcgggcacaagggccag 338
            ||||||||||||||||||||
Sbjct: 1121 ggcgcgggcacaagggccag 1102
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>ref|NM_187658.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 ctgcgccgccgtctcccccg 406
           ||||||||||||||||||||
Sbjct: 384 ctgcgccgccgtctcccccg 365
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 282     ggccgcgggatcggctccgggaagggcaagac 313
               ||||| || ||||||||||| |||||||||||
Sbjct: 1509090 ggccggggtatcggctccggcaagggcaagac 1509121
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    ctgcgccgccgtctcccccg 406
              ||||||||||||||||||||
Sbjct: 479691 ctgcgccgccgtctcccccg 479710
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>gb|AC161245.2| Mus musculus BAC clone RP24-394N21 from chromosome 9, complete
            sequence
          Length = 177389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  agacggcggggcgcgggcac 329
            ||||||||||||||||||||
Sbjct: 6755 agacggcggggcgcgggcac 6736
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>gb|BC065996.1| Mus musculus cDNA clone MGC:90018 IMAGE:5689710, complete cds
          Length = 2664

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 27 gtaccacagccgccatgttg 8
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>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence
          Length = 180056

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ggcgcgggcacaagggccag 338
             ||||||||||||||||||||
Sbjct: 47396 ggcgcgggcacaagggccag 47415
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>gb|BC011288.1| Mus musculus cDNA clone IMAGE:3586451, **** WARNING: chimeric
          clone ****
          Length = 2406

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 34 gtaccacagccgccatgttg 15
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 282     ggccgcgggatcggctccgggaagggcaagac 313
               |||||||| ||||||||||| || ||||||||
Sbjct: 3517890 ggccgcggcatcggctccggcaaaggcaagac 3517859
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>gb|AY309087.1|AY309087S1 Chlamydomonas reinhardtii PF2 (PF2) gene, exons 1 through 11
          Length = 7433

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 238  acctccgcgacaaccccggcgcgacgcagcag 269
            ||||||||||||||||||| || |||| ||||
Sbjct: 1877 acctccgcgacaaccccggggccacgcggcag 1846
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 318     gggcgcgggcacaagggccagaag 341
               |||||||| |||||||||||||||
Sbjct: 2269725 gggcgcggccacaagggccagaag 2269748
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 282     ggccgcgggatcggctccgggaagggcaagac 313
               ||||| || ||||||||||| |||||||||||
Sbjct: 3368186 ggccgtggcatcggctccggcaagggcaagac 3368155
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>gb|BC114036.1| Bos taurus cDNA clone IMAGE:8017628, containing frame-shift
          errors
          Length = 2950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 30 gtaccacagccgccatgttg 11
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>dbj|AK163229.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched
          library, clone:B020004A10 product:ubiquitin-associated
          protein 1, full insert sequence
          Length = 1937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 37 gtaccacagccgccatgttg 18
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>dbj|AK160804.1| Mus musculus 17 days embryo head cDNA, RIKEN full-length enriched
          library, clone:3321401C02 product:testis specific gene
          A14, full insert sequence
          Length = 3329

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 43 gtaccacagccgccatgttg 24
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>gb|AF275549.3|AF275549 Mus musculus ubiquitin-associated protein NAG20 mRNA, complete
          cds
          Length = 2676

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 38 gtaccacagccgccatgttg 19
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>dbj|AK009596.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
          library, clone:2310033J24 product:ubiquitin-associated
          protein, full insert sequence
          Length = 2471

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 39 gtaccacagccgccatgttg 20
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>dbj|AK028670.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length
          enriched library, clone:4732431E19
          product:ubiquitin-associated protein, full insert
          sequence
          Length = 2567

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 30 gtaccacagccgccatgttg 11
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 282     ggccgcgggatcggctccgggaagggcaagac 313
               |||||||| ||||||||||| || ||||||||
Sbjct: 2663174 ggccgcggtatcggctccggcaaaggcaagac 2663205
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>dbj|AK028477.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
          library, clone:4631422K22 product:ubiquitin-associated
          protein, full insert sequence
          Length = 2576

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 38 gtaccacagccgccatgttg 19
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>dbj|AK076078.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
          enriched library, clone:2700092A01
          product:ubiquitin-associated protein, full insert
          sequence
          Length = 1950

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 39 gtaccacagccgccatgttg 20
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>dbj|AK033121.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
          enriched library, clone:8030441K14
          product:ubiquitin-associated protein, full insert
          sequence
          Length = 2594

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 31 gtaccacagccgccatgttg 12
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    ctgcgccgccgtctcccccg 406
              ||||||||||||||||||||
Sbjct: 479689 ctgcgccgccgtctcccccg 479708
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 306     ggcaagacggcggggcgcgggcacaagggccagaag 341
               ||||||||||||   |||||||||||||| ||||||
Sbjct: 1582506 ggcaagacggcgacccgcgggcacaaggggcagaag 1582471
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    cggcttcgagggtggccaga 381
              ||||||||||||||||||||
Sbjct: 218621 cggcttcgagggtggccaga 218640
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>emb|X90765.2|TARIBPROT Thermus aquaticus rps8, rpl6, rpl18, rps5, rpl30, rpl15 genes
          Length = 2340

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 306  ggcaagacggcggggcgcgggcacaagggccagaag 341
            ||||||||||||   |||||||||||||| ||||||
Sbjct: 1942 ggcaagacggcgacccgcgggcacaaggggcagaag 1977
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>dbj|AK108704.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-A02, full
           insert sequence
          Length = 1276

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 ctgcgccgccgtctcccccg 406
           ||||||||||||||||||||
Sbjct: 512 ctgcgccgccgtctcccccg 493
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>gb|AY106892.1| Zea mays PCO104142 mRNA sequence
          Length = 746

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 416 caagaaccgcttctcactcacgttccagccct 447
           |||||||| |||||||||||| || |||||||
Sbjct: 8   caagaaccccttctcactcacatttcagccct 39
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>gb|BC083594.1| Rattus norvegicus ubiquitin-associated protein 1, mRNA (cDNA
          clone MGC:94328 IMAGE:7132783), complete cds
          Length = 2662

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 43 gtaccacagccgccatgttg 24
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>ref|NM_001012190.1| Rattus norvegicus ubiquitin-associated protein 1 (Ubap1), mRNA
          Length = 2662

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 43 gtaccacagccgccatgttg 24
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 306     ggcaagacggcggggcgcgggcacaagggccagaag 341
               ||||||||||||   |||||||||||||| ||||||
Sbjct: 1258375 ggcaagacggcgacccgcgggcacaaggggcagaag 1258340
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>ref|NM_023305.2| Mus musculus ubiquitin-associated protein 1 (Ubap1), mRNA
          Length = 2676

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 13 gtaccacagccgccatgttg 32
          ||||||||||||||||||||
Sbjct: 38 gtaccacagccgccatgttg 19
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>emb|AL807823.6| Mouse DNA sequence from clone RP23-328E6 on chromosome 4, complete
             sequence
          Length = 216239

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gtaccacagccgccatgttg 32
             ||||||||||||||||||||
Sbjct: 46922 gtaccacagccgccatgttg 46941
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>gb|AC161596.2| Mus musculus BAC clone RP23-477K6 from chromosome 9, complete sequence
          Length = 187832

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    agacggcggggcgcgggcac 329
              ||||||||||||||||||||
Sbjct: 164909 agacggcggggcgcgggcac 164890
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>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
             complete sequence
          Length = 116214

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   ctgcgccgccgtctcccccg 406
             ||||||||||||||||||||
Sbjct: 78151 ctgcgccgccgtctcccccg 78170


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,989,703
Number of Sequences: 3902068
Number of extensions: 1989703
Number of successful extensions: 43370
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42097
Number of HSP's gapped (non-prelim): 1269
length of query: 447
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 425
effective length of database: 17,147,199,772
effective search space: 7287559903100
effective search space used: 7287559903100
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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