ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50a04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA Length = 1263 Score = 276 bits (139), Expect = 6e-71 Identities = 232/263 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 153 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 212 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 213 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 272 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 273 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 332 Query: 369 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 333 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 392 Query: 429 tgtgaaaaatgcaacttctttga 451 || |||||||||||||||||||| Sbjct: 393 tgcgaaaaatgcaacttctttga 415
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence Length = 1284 Score = 276 bits (139), Expect = 6e-71 Identities = 232/263 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 163 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 222 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 223 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 282 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 283 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 342 Query: 369 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 343 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 402 Query: 429 tgtgaaaaatgcaacttctttga 451 || |||||||||||||||||||| Sbjct: 403 tgcgaaaaatgcaacttctttga 425
>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full insert sequence Length = 1095 Score = 276 bits (139), Expect = 6e-71 Identities = 232/263 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 164 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 223 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 224 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 283 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 284 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 343 Query: 369 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 344 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 403 Query: 429 tgtgaaaaatgcaacttctttga 451 || |||||||||||||||||||| Sbjct: 404 tgcgaaaaatgcaacttctttga 426
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full insert sequence Length = 1283 Score = 276 bits (139), Expect = 6e-71 Identities = 232/263 (88%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||||||||||||||||||||||||||| | |||||||| ||||||| ||||||||| Sbjct: 167 gagcagcacggctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggc 226 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||||| ||||||||| |||||||||||||| | || ||||||||||||||| | | || Sbjct: 227 gaggtgttcggctgcaggcattgccacaacgaggccaagaattcgctcgagatccatctc 286 Query: 309 ctcgaccggcacgacatcccccgccacgaaatcagcaaggtcatctgctctctctgcaac 368 ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct: 287 aatgaccgtcacgagatcccccgccacgaaatcaagaaggttatctgctctctctgcgac 346 Query: 369 aaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatggggaaatacttc 428 |||||||||||||| || || |||| || |||||||||||||||||||||||||||||| Sbjct: 347 aaagaacaggatgtacaacagtactgttctggttgtggggcatgcatggggaaatacttc 406 Query: 429 tgtgaaaaatgcaacttctttga 451 || |||||||||||||||||||| Sbjct: 407 tgcgaaaaatgcaacttctttga 429
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Plus Query: 233 ggcgccctgctgcggcgaggtcttcggctgccggcattgccacaaccaagctaagaattc 292 |||||||||||||||| ||| |||||||||||| |||||||||||| | || ||||| || Sbjct: 382 ggcgccctgctgcggccaggccttcggctgccgccattgccacaacgacgccaagaactc 441 Query: 293 gctcgaggtggacgtcctcgaccggcacgacatcccccgccacgaaatcagcaaggtcat 352 ||| ||||| ||| | |||||||||||| ||||||||||||||||| | ||||| || Sbjct: 442 gctggaggtcgacccgcgcgaccggcacgagatcccccgccacgaaataaagaaggtgat 501 Query: 353 ctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggcatg 412 ||| ||||||||| |||||||||||| ||||| ||||||||||| | |||||||| || Sbjct: 502 ctgttctctctgctccaaagaacaggacgtgcaacagaactgctccagctgtggggcctg 561 Query: 413 catggggaaatacttctgtgaaaaatgcaacttctt 448 |||||| || ||||||||| || |||||| ||||| Sbjct: 562 catgggcaagtacttctgtaaagtatgcaagttctt 597
>ref|XM_476180.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 384 Score = 113 bits (57), Expect = 5e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 391 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 96 Query: 451 a 451 | Sbjct: 97 a 97
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0012L23, complete sequence Length = 121659 Score = 113 bits (57), Expect = 5e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 391 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5205 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 5264 Query: 451 a 451 | Sbjct: 5265 a 5265
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08, complete sequence Length = 148348 Score = 113 bits (57), Expect = 5e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 391 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 100040 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 100099 Query: 451 a 451 | Sbjct: 100100 a 100100
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 5e-22 Identities = 60/61 (98%) Strand = Plus / Plus Query: 391 actgctccggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 450 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7145191 actgctctggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttg 7145250 Query: 451 a 451 | Sbjct: 7145251 a 7145251
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 72889 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 72830 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 72829 gctgcaggcattgccacaac 72810 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 399 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttga 451 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 71512 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttga 71460 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 71687 aggttatctgctctctctgcgacaaagaacaggatgt 71651 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 72636 gaccgtcacgagatcccccgccacgaaatca 72606
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16194000 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16193941 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 16193940 gctgcaggcattgccacaac 16193921 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 399 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttga 451 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 16192623 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttga 16192571 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16192798 aggttatctgctctctctgcgacaaagaacaggatgt 16192762 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 16193747 gaccgtcacgagatcccccgccacgaaatca 16193717
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 103 bits (52), Expect = 5e-19 Identities = 73/80 (91%) Strand = Plus / Minus Query: 199 gctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcg 258 |||||||||||||||||||| | |||||||| ||||||| |||||||||||||| |||| Sbjct: 16202241 gctgcgagcattacacgaggggatgcaggatcagggcgccgtgctgcggcgaggtgttcg 16202182 Query: 259 gctgccggcattgccacaac 278 ||||| |||||||||||||| Sbjct: 16202181 gctgcaggcattgccacaac 16202162 Score = 97.6 bits (49), Expect = 3e-17 Identities = 52/53 (98%) Strand = Plus / Minus Query: 399 ggttgtggggcatgcatggggaaatacttctgtgaaaaatgcaacttctttga 451 |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 16200864 ggttgtggggcatgcatggggaaatacttctgcgaaaaatgcaacttctttga 16200812 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| ||||||||||||||| |||||||||||||||| Sbjct: 16201039 aggttatctgctctctctgcgacaaagaacaggatgt 16201003 Score = 46.1 bits (23), Expect = 0.099 Identities = 29/31 (93%) Strand = Plus / Minus Query: 312 gaccggcacgacatcccccgccacgaaatca 342 ||||| ||||| ||||||||||||||||||| Sbjct: 16201988 gaccgtcacgagatcccccgccacgaaatca 16201958
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full insert sequence Length = 2604 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtg 405 |||| |||||||||||||||||||||||||||||||| || || | |||||| ||||| Sbjct: 1675 aggttatctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtg 1734 Query: 406 gggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 |||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 1735 gggcatgcttgggtaaatatttctgcgcaaaatgcaactt 1774 Score = 83.8 bits (42), Expect = 5e-13 Identities = 126/154 (81%) Strand = Plus / Plus Query: 189 gagcagcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggc 248 |||||| |||| |||| |||||||| ||||| |||| |||| ||||||||||||||||| Sbjct: 281 gagcagtacggatgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggc 340 Query: 249 gaggtcttcggctgccggcattgccacaaccaagctaagaattcgctcgaggtggacgtc 308 ||| |||||| ||| |||| ||||||||| |||| ||| | ||| | ||||| | || Sbjct: 341 gagatcttcgattgcaggcactgccacaacgaagcgaaggactcgttggaggtcagcatc 400 Query: 309 ctcgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 401 agcgaccggcacgagatccctcgccatgaaatca 434
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 93.7 bits (47), Expect = 5e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 351 atctgctctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggca 410 |||||||||||||||||||||||||||||||| || || | |||||| |||||||||| Sbjct: 336 atctgctctctctgcaacaaagaacaggatgtacaacaggattgctccaattgtggggca 395 Query: 411 tgcatggggaaatacttctgtgaaaaatgcaactt 445 ||| |||| ||||| ||||| | |||||||||||| Sbjct: 396 tgcttgggtaaatatttctgcgcaaaatgcaactt 430
>dbj|AK104287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D07, full insert sequence Length = 1252 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>dbj|AK104170.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F09, full insert sequence Length = 1203 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 193 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 252 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 253 tgttcgcttgccgccattgccacaac 278
>dbj|AK069502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020D18, full insert sequence Length = 1306 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 212 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 271 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 272 tgttcgcttgccgccattgccacaac 297
>dbj|AK059316.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H03, full insert sequence Length = 1334 Score = 83.8 bits (42), Expect = 5e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 193 agcacggctgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgagg 252 ||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||||||| Sbjct: 190 agcacgggtgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgagg 249 Query: 253 tcttcggctgccggcattgccacaac 278 | |||| ||||| |||||||||||| Sbjct: 250 tgttcgcttgccgccattgccacaac 275
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21490548 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21490607 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 21490608 tgccgccattgccacaac 21490625
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 21418869 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 21418928 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 21418929 tgccgccattgccacaac 21418946
>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 158019 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Minus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 ||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |||| Sbjct: 155341 tgcgagcattacaggaggagatgcaagatcgtggcgccctgctgcggcgaggtgttcgct 155282 Query: 261 tgccggcattgccacaac 278 ||||| |||||||||||| Sbjct: 155281 tgccgccattgccacaac 155264
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531063 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531122 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 2531123 tgcaggcactgccacaacgaagc 2531145 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13072459 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13072400 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 13072399 gccattgccacaac 13072386 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532540 aggttatctgctctctctgcaacaaagaacaggatgt 2532576 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 401 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532723 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532767 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531267 cgaccggcacgagatccctcgccatgaaatca 2531298
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 139031 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 138972 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 138971 tgcaggcactgccacaacgaagc 138949 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 137554 aggttatctgctctctctgcaacaaagaacaggatgt 137518 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 401 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 137371 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 137327 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 138827 cgaccggcacgagatccctcgccatgaaatca 138796
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 2531173 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 2531232 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 2531233 tgcaggcactgccacaacgaagc 2531255 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 13069234 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 13069175 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 13069174 gccattgccacaac 13069161 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 2532650 aggttatctgctctctctgcaacaaagaacaggatgt 2532686 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 401 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 2532833 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 2532877 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 2531377 cgaccggcacgagatccctcgccatgaaatca 2531408
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 69.9 bits (35), Expect = 7e-09 Identities = 71/83 (85%) Strand = Plus / Plus Query: 201 tgcgagcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggc 260 |||| |||||||| ||||| |||| |||| |||||||||||||||||||| |||||| Sbjct: 103559 tgcgtgcattacaggaggaaatgcaagataagggcgccctgctgcggcgagatcttcgat 103618 Query: 261 tgccggcattgccacaaccaagc 283 ||| |||| ||||||||| |||| Sbjct: 103619 tgcaggcactgccacaacgaagc 103641 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 346 aggtcatctgctctctctgcaacaaagaacaggatgt 382 |||| |||||||||||||||||||||||||||||||| Sbjct: 105036 aggttatctgctctctctgcaacaaagaacaggatgt 105072 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Plus Query: 401 ttgtggggcatgcatggggaaatacttctgtgaaaaatgcaactt 445 ||||||||||||| |||| ||||| ||||| | |||||||||||| Sbjct: 105219 ttgtggggcatgcttgggtaaatatttctgcgcaaaatgcaactt 105263 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 311 cgaccggcacgacatcccccgccacgaaatca 342 |||||||||||| ||||| ||||| ||||||| Sbjct: 103763 cgaccggcacgagatccctcgccatgaaatca 103794
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 150157 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 150098 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 150097 gccattgccacaac 150084
>dbj|AK059950.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B01, full insert sequence Length = 1059 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||||||| |||||||| |||||| ||| |||||| ||||| Sbjct: 101 agcactacaggaggaggtgcaggatccgggcgccgtgctgcaacgacgtcttccactgcc 160 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 161 gccattgccacaac 174
>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence Length = 1106 Score = 63.9 bits (32), Expect = 4e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 351 atctgctctctctgcaacaaagaacaggatgt 382 |||||||||||||||||||||||||||||||| Sbjct: 13 atctgctctctctgcaacaaagaacaggatgt 44
>gb|AY105408.1| Zea mays PCO132099 mRNA sequence Length = 795 Score = 63.9 bits (32), Expect = 4e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 357 tctctctgcaacaaagaacaggatgtgcagaagaactgctccggttgtggggcatgcatg 416 ||||||||| ||| |||||||| ||||| ||||||||||| | |||||||| |||||| Sbjct: 6 tctctctgctccaaggaacaggacgtgcaacagaactgctccagctgtggggcctgcatg 65 Query: 417 gggaaatacttctgtgaaaaatgcaacttctt 448 || || ||||||||| || |||||| ||||| Sbjct: 66 ggcaagtacttctgtaaagtatgcaagttctt 97
>dbj|AK073680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full insert sequence Length = 1232 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 205 agcattacacgaggaggtgcaggatacgggcgccctgctgcggcgaggtcttcggctgcc 264 |||| |||| ||||||||||| ||| |||||||| |||||| ||| |||||| ||||| Sbjct: 154 agcactacaggaggaggtgcacgatccgggcgccgtgctgcaacgacgtcttccactgcc 213 Query: 265 ggcattgccacaac 278 | |||||||||||| Sbjct: 214 gccattgccacaac 227
>ref|NM_191787.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 900 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 371 gttgtggtgtatgcatggggaagtacttctgtgaa 405
>gb|AY574990.1| Oryza sativa (japonica cultivar-group) zinc finger protein (Tranpr) mRNA, complete cds Length = 1393 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 427 gttgtggtgtatgcatggggaagtacttctgtgaa 461
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 29960765 gttgtggtgtatgcatggggaagtacttctgtgaa 29960731
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 105323 gttgtggtgtatgcatggggaagtacttctgtgaa 105289
>dbj|AK070809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072L02, full insert sequence Length = 2362 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 2241 gttgtggtgtatgcatggggaagtacttctgtgaa 2275
>dbj|AK068005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E06, full insert sequence Length = 1843 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 734 gttgtggtgtatgcatggggaagtacttctgtgaa 768
>dbj|AK062155.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H12, full insert sequence Length = 1692 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Plus Query: 400 gttgtggggcatgcatggggaaatacttctgtgaa 434 ||||||| | |||||||||||| |||||||||||| Sbjct: 617 gttgtggtgtatgcatggggaagtacttctgtgaa 651
>emb|AL357315.14| Human DNA sequence from clone RP11-809N15 on chromosome 6 Contains a putative novel gene and a novel gene. Contains a CpG island, complete sequence Length = 121129 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 420 aaatacttctgtgaaaaatgca 441 |||||||||||||||||||||| Sbjct: 8042 aaatacttctgtgaaaaatgca 8063
>gb|AY104238.1| Zea mays PCO120536 mRNA sequence Length = 1630 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 411 tgcatggggaaatacttctgtg 432 |||||||||||||||||||||| Sbjct: 1584 tgcatggggaaatacttctgtg 1605
>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence Length = 168794 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 acccccgcctccttcctctct 118 ||||||||||||||||||||| Sbjct: 110450 acccccgcctccttcctctct 110430
>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence Length = 193343 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 ggtcatctgctctctctgcaacaa 370 |||||| ||||||||||||||||| Sbjct: 87761 ggtcatatgctctctctgcaacaa 87738
>ref|XM_541048.2| PREDICTED: Canis familiaris similar to Galanin receptor type 1 (GAL1-R) (GALR1) (LOC483928), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gacccccgcctccttcctct 116 |||||||||||||||||||| Sbjct: 837 gacccccgcctccttcctct 856
>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the 3' end of the UTRN gene for utrophin (homologous to dystrophin), complete sequence Length = 201399 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 cagcctccccattctttctt 33 |||||||||||||||||||| Sbjct: 23521 cagcctccccattctttctt 23502
>emb|AL139328.8| Human DNA sequence from clone RP11-84N7 on chromosome 13 Contains part of the DGKH gene for diacylglycerol kinase eta, complete sequence Length = 148430 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cagcacagcctccccattct 28 |||||||||||||||||||| Sbjct: 38551 cagcacagcctccccattct 38532
>gb|AC157351.11| Mus musculus chromosome 5, clone RP23-219K16, complete sequence Length = 196331 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 acccccgcctccttcctctcttcc 121 ||||||||||||||||| |||||| Sbjct: 122125 acccccgcctccttcctttcttcc 122102 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,386,926 Number of Sequences: 3902068 Number of extensions: 3386926 Number of successful extensions: 85709 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85353 Number of HSP's gapped (non-prelim): 356 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
