>RD23B_HUMAN (P54727) UV excision repair protein RAD23 homolog B (hHR23B) (XP-C|
           repair-complementing complex 58 kDa protein) (p58)
          Length = 409

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = -1

Query: 431 TASSRKAPMEKASADRPLPL*KHSSTCASL-PATVIR*LDTSEREP---SAARQRMKLTR 264
           TA +       A A  P+P    +ST AS+ PA+      T+  EP   SAA+Q     +
Sbjct: 97  TAVTSSTTTTVAQAPTPVPALAPTSTPASITPASA-----TASSEPAPASAAKQEKPAEK 151

Query: 263 PQSTESATRPTAIWLPERPARRSCALRRDRSSCVTAGR 150
           P  T  AT PTA       + RS  L  D +S +  G+
Sbjct: 152 PAETPVATSPTATDSTSGDSSRS-NLFEDATSALVTGQ 188

>SGS3_DROYA (P13728) Salivary glue protein Sgs-3 precursor|
          Length = 263

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 28/116 (24%), Positives = 37/116 (31%)
 Frame = -1

Query: 353 CASLPATVIR*LDTSEREPSAARQRMKLTRPQSTESATRPTAIWLPERPARRSCALRRDR 174
           C   P T  R  + S    +    R   TRP +T + T  T      RP  RS   R   
Sbjct: 66  CTDAPTTTKRTTEKSTTRRTTTTTRQTTTRPTTTTTTTTTT-----RRPTTRSTTTRHTT 120

Query: 173 SSCVTAGRIVKSSLDXXXXXXXXXCPIHLQIAS*AGTDLTPLATTSTRLPFPRPDT 6
           ++  T  R   ++                       T      TT+TRLP  R  T
Sbjct: 121 TTTTTTRRPTTTTTTTRRPTTTTTT-----------TRRPTTTTTTTRLPTTRSTT 165

>KPRS2_ORYSA (Q69XQ6) Ribose-phosphate pyrophosphokinase 2 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 2)
          Length = 399

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
 Frame = -1

Query: 362 SSTCASLPATVIR*LDTSER------EPSAARQRMKLTRPQSTESATRPTAIWLPERPAR 201
           SS  ASL A   R +  SE+      E    ++RM +  P+S      P A+W P  PA+
Sbjct: 20  SSPAASLRARTPRCVMGSEQVRVVVEEEGKTKKRMGVAEPRSA-----PPAVWTPRAPAQ 74

Query: 200 --RSCALRRDRSSCVTAGRIVKSSLDXXXXXXXXXCPIHLQIAS*AGTDL 57
             R  ALR D       GR  +  +           P+  +IAS  G DL
Sbjct: 75  EARLAALRTD-------GRDSRLKI----FSGTANRPLAQEIASYLGVDL 113

>Y3208_DESVH (Q726E5) UPF0078 membrane protein DVU3208|
          Length = 327

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
 Frame = +1

Query: 211 RSGSQIAVGLVALSVLCGL---VSFILCLAAEG----------SRSEVSNYLMTVAGSEA 351
           R+G    VG   ++ LCG    V  ++C A +G          S S V + L  +A    
Sbjct: 32  RTGGSRNVGATNVARLCGTKVGVLTLVCDALKGAIPVAVALSISDSTVFHSLTALAALLG 91

Query: 352 QVELCFYNGSGRSALAFSIGAFLLLA 429
            +  CF +  G  A+A ++G FL LA
Sbjct: 92  HLYSCFLSFKGGKAVATTVGVFLPLA 117

>TAT2_YEAST (P38967) Tryptophan permease (Tryptophan amino acid transporter)|
          Length = 592

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/47 (48%), Positives = 29/47 (61%)
 Frame = +1

Query: 202 RAGRSGSQIAVGLVALSVLCGLVSFILCLAAEGSRSEVSNYLMTVAG 342
           RAGR      VG++A S L GL++F   L   GS SEV N+LM +AG
Sbjct: 401 RAGRP----LVGIMANS-LFGLLAF---LVKSGSMSEVFNWLMAIAG 439

>SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3|
          Length = 156

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -1

Query: 305 REPSAARQRMKLTRPQSTESATRPTAIWLPERPARRSCALRRDRSSCVTAGRI 147
           R  SA+R+R +  R +S     R +    P R  RRS + RR RSS ++ GR+
Sbjct: 17  RSRSASRERERRRRERSRSRERRRSRSRSPHR--RRSRSPRRHRSSSISPGRL 67

>AMYB_IPOBA (P10537) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan|
           maltohydrolase)
          Length = 498

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 48  ERSEVGTGLASNLQ-----VNWXXXXXXXXSSIK*GFHNAAGRDARRPV 179
           E ++V  GL  N+      ++W        + +  GF+N AGRD  RP+
Sbjct: 282 EANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPI 330

>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger|
           1c) (OsCAX1c)
          Length = 450

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +1

Query: 193 QERRAGRSGSQIAVGLVALSVLCGLVSFILCLAAEGSRSEVSNYLMTVAGSEAQVELCFY 372
           +ER   +  + +++GL+ L VLC + + +    +    S  S+ +M ++ S A V L  Y
Sbjct: 193 KERPLDKRQADVSIGLLLLGVLCHIATLVSKYTSSTGDSINSSSVMQLSRSCAIVMLIAY 252

Query: 373 NGS 381
            GS
Sbjct: 253 FGS 255

>YCEI_BACSU (O34691) Hypothetical metabolite transport protein yceI|
          Length = 400

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = +1

Query: 217 GSQIAVGLVALSVLCGLVSFILCLAAEGSRSEVSNYLMTVAGSEAQVELCFYNGSGRSAL 396
           GS  ++G+ A + L GL      LA    R +V  +++T+        LCF  GSG SA 
Sbjct: 52  GSVNSIGMAAGAFLFGL------LADRIGRKKV--FIITL--------LCFSIGSGISAF 95

Query: 397 AFSIGAFLLL 426
             S+ AFL+L
Sbjct: 96  VTSLSAFLIL 105

>VE2_HPV08 (P06422) Regulatory protein E2|
          Length = 498

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -1

Query: 314 TSEREPSAARQRMKLTRPQSTES-----ATRPTAIWLPERPARRSCALRRDRSSCVTAGR 150
           T+  + ++ +QR    +PQ TE+       RP++   P++  RRS +  R RS   +  R
Sbjct: 221 TTSADSTSRQQRSPAKQPQQTETKGRRYGRRPSSRTRPQKEQRRSRSRHRTRSRSRSLSR 280

Query: 149 I 147
           +
Sbjct: 281 V 281

>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor|
           [Contains: Nuclear pore complex protein Nup98
           (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore
           complex protein Nup96 (Nucleoporin Nup96) (96 kDa
           nucleoporin)]
          Length = 1729

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 302 EPSAARQRMKLTRPQSTESATRPTAIWLPERPARR 198
           +P    +R+K T P + ++ T PT   L  RPA R
Sbjct: 525 DPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATR 559

>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98|
           kDa nucleoporin)
          Length = 937

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 302 EPSAARQRMKLTRPQSTESATRPTAIWLPERPARR 198
           +P    +R+K T P + ++ T PT   L  RPA R
Sbjct: 524 DPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATR 558

>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 328 MTVAGSEAQVELCFYNGSGRSALAFSIGA 414
           MT+ GS+ QV  C     GRS LA  I A
Sbjct: 295 MTIKGSKVQVSFCAPGAPGRSTLAALIAA 323


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,487,467
Number of Sequences: 219361
Number of extensions: 537239
Number of successful extensions: 1876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)