ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49h11 |
|---|---|
| Clone Library Name | barley_pub |
>SCS2_YEAST (P40075) Vesicle-associated membrane protein-associated protein| SCS2 (VAMP-associated protein SCS2) (VAP homolog 1) (Cholin sensitivity suppressor protein 2) Length = 243 Score = 54.7 bits (130), Expect = 1e-07 Identities = 27/56 (48%), Positives = 35/56 (62%) Frame = +1 Query: 304 IQPRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRAT 471 I P L + L +QS+ + N SD+ +AFKVKTT+PK YCVRPN V+ P T Sbjct: 5 ISPDVLVYKSPLTEQSTEYASISNNSDQTIAFKVKTTAPKFYCVRPNAAVVAPGET 60
>VAPA_PONPY (Q5R601) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) Length = 242 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/54 (48%), Positives = 35/54 (64%) Frame = +1 Query: 310 PRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRAT 471 P +L+F + ++ L N SD V FKVKTT+P+RYCVRPN G+I P +T Sbjct: 13 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGST 66
>VAPA_HUMAN (Q9P0L0) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 53.9 bits (128), Expect = 2e-07 Identities = 26/54 (48%), Positives = 35/54 (64%) Frame = +1 Query: 310 PRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRAT 471 P +L+F + ++ L N SD V FKVKTT+P+RYCVRPN G+I P +T Sbjct: 13 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGST 66
>VAPA_RAT (Q9Z270) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 53.1 bits (126), Expect = 4e-07 Identities = 26/51 (50%), Positives = 33/51 (64%) Frame = +1 Query: 310 PRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILP 462 P +L+F + ++ L N SD V FKVKTT+P+RYCVRPN GVI P Sbjct: 13 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDP 63
>VAPA_MOUSE (Q9WV55) Vesicle-associated membrane protein-associated protein A| (VAMP-associated protein A) (VAMP-A) (VAP-A) (33 kDa Vamp-associated protein) (VAP-33) Length = 242 Score = 52.8 bits (125), Expect = 5e-07 Identities = 25/51 (49%), Positives = 33/51 (64%) Frame = +1 Query: 310 PRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILP 462 P +L+F + ++ L N SD V FKVKTT+P+RYCVRPN G+I P Sbjct: 13 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDP 63
>VP33_APLCA (Q16943) Vesicle-associated membrane protein/synaptobrevin-binding| protein (VAP-33) Length = 260 Score = 52.0 bits (123), Expect = 8e-07 Identities = 23/52 (44%), Positives = 33/52 (63%) Frame = +1 Query: 316 ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRAT 471 EL+F + + L N +D + FKVKTT+PKRYCVRPN G++ P+ + Sbjct: 15 ELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTS 66
>SCS22_YEAST (Q6Q595) Vesicle-associated membrane protein-associated protein| SCS22 (VAMP-associated protein SCS22) (VAP homolog 2) Length = 175 Score = 50.8 bits (120), Expect = 2e-06 Identities = 23/51 (45%), Positives = 34/51 (66%) Frame = +1 Query: 304 IQPRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 I P +L F L KQS+ + L N ++ V FKV+T++P +YCVRPN+ +I Sbjct: 3 IVPEKLVFKAPLNKQSTEYIKLENDGEKRVIFKVRTSAPTKYCVRPNVAII 53
>VAPB_RAT (Q9Z269) Vesicle-associated membrane protein-associated protein B| (VAMP-associated protein B) (VAMP-B) (VAP-B) Length = 242 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = +1 Query: 295 VV*IQPR-ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 V+ ++P+ EL+F + ++ L N +D V FKVKTT+P+RYCVRPN GVI Sbjct: 6 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVI 60
>VAPB_HUMAN (O95292) Vesicle-associated membrane protein-associated protein B/C| (VAMP-associated protein B/C) (VAMP-B/VAMP-C) (VAP-B/VAP-C) Length = 242 Score = 49.3 bits (116), Expect = 5e-06 Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Frame = +1 Query: 295 VV*IQPR-ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 V+ ++P+ EL+F + ++ L N +D V FKVKTT+P+RYCVRPN G+I Sbjct: 6 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGII 60
>VAPB_MOUSE (Q9QY76) Vesicle-associated membrane protein-associated protein B| (VAMP-associated protein B) (VAMP-associated protein 33b) (VAMP-B) (VAP-B) Length = 242 Score = 48.5 bits (114), Expect = 9e-06 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Frame = +1 Query: 295 VV*IQPR-ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 V+ ++P+ EL+F + ++ L N +D V FKVKTT P+RYCVRPN GVI Sbjct: 6 VLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVI 60
>YDFC_SCHPO (Q10484) Hypothetical protein C17C9.12 in chromosome I| Length = 319 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/44 (47%), Positives = 27/44 (61%) Frame = +1 Query: 325 FTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 F L + C + L N + + FKVKTT+PK+YCVRPN G I Sbjct: 11 FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRI 54
>MSPD2_HUMAN (Q8NHP6) Motile sperm domain-containing protein 2| Length = 518 Score = 35.0 bits (79), Expect = 0.10 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 316 ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRATCD 477 EL F + + L N + VAFKV+TT+P++Y V+P+ P A+ D Sbjct: 335 ELYFGSTESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASVD 388
>MSPD2_MOUSE (Q9CWP6) Motile sperm domain-containing protein 2| Length = 518 Score = 34.3 bits (77), Expect = 0.17 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +1 Query: 316 ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPRATCD 477 EL F + + L N + VAFKV+TT+P++Y V+P+ P A+ D Sbjct: 335 ELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASID 388
>MSP32_CAEEL (P53018) Major sperm protein 32 (MSP)| Length = 190 Score = 31.6 bits (70), Expect = 1.1 Identities = 19/70 (27%), Positives = 33/70 (47%) Frame = +1 Query: 256 CRPTLFAAAMGQGVV*IQPRELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCV 435 CR + G +V P + + T+ +K ++N S + + +KTT+ KR V Sbjct: 68 CRTGMIQTQPGTKIVFNAPYDDKHTYHIK--------VINSSARRIGYGIKTTNMKRLGV 119 Query: 436 RPNIGVILPR 465 P GV+ P+ Sbjct: 120 DPPCGVLDPK 129
>MSP3_GLORO (P53023) Major sperm protein 3| Length = 125 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +1 Query: 313 RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPR 465 +++ F +++ V ++N + + F KTT PKR + P GV+ P+ Sbjct: 14 QKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPK 64
>MSP1_GLORO (P53021) Major sperm protein 1| Length = 125 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +1 Query: 313 RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPR 465 +++ F +++ V ++N + + F KTT PKR + P GV+ P+ Sbjct: 14 QKVVFNAPFDNKATYYVRIINPGTKRIGFAFKTTKPKRINMNPPNGVLGPK 64
>MSP2_GLORO (P53022) Major sperm protein 2| Length = 125 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +1 Query: 313 RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPR 465 +++ F +++ V ++N + F KTT PKR + P GV+ P+ Sbjct: 14 QKVVFNAPFDNKATYYVRVINPGTNRIGFAFKTTKPKRINMNPPNGVLGPK 64
>SSP31_CAEEL (Q9XXL3) Sperm-specific protein 31| Length = 107 Score = 29.6 bits (65), Expect = 4.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = +1 Query: 352 SCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 S + ++V++S+ +AFKVK+++ + Y VRP G + Sbjct: 17 SSTHYIVSESESRLAFKVKSSNNESYRVRPVYGFV 51
>IMM_BPT4 (P08986) Immunity protein| Length = 83 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -3 Query: 344 FFSSKV-NWSSRGWI*TTPWPIAAAKRVGRQANQ*AALR 231 FF+S + NWS GW T W IA + Q NQ +R Sbjct: 42 FFASLLFNWSIIGWFITFIWSIAGETKKSAQPNQVIIIR 80
>SSPZC_CAEEL (Q23246) Sperm-specific protein ZC168.6| Length = 107 Score = 29.3 bits (64), Expect = 5.5 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +1 Query: 364 HLVNKSDEYVAFKVKTTSPKRYCVRPNIGVI 456 ++ ++SD +AFKVK+++ + Y VRP G + Sbjct: 21 NITSESDSRLAFKVKSSNNEHYRVRPVYGFV 51
>MSP10_CAEEL (P05634) Major sperm protein 10/36/56/76 (MSP)| Length = 126 Score = 29.3 bits (64), Expect = 5.5 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQPR-ELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPNAKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP78_CAEEL (Q94053) Major sperm protein 78 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP77_CAEEL (Q9TVW5) Major sperm protein 77/79 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP63_CAEEL (Q21244) Major sperm protein 63 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYRIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP55_CAEEL (Q17856) Major sperm protein 55/57 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIVYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP3_CAEEL (Q19832) Major sperm protein 3 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP33_CAEEL (P53019) Major sperm protein 33 (MSP)| Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MSP19_CAEEL (P53017) Major sperm protein| 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) Length = 126 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +1 Query: 274 AAAMGQGVV*IQP-RELQFTFELKKQSSCSVHLVNKSDEYVAFKVKTTSPKRYCVRPNIG 450 A ++ G + QP ++ F + + + ++N S + + +KTT+ KR V P G Sbjct: 1 AQSVPPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCG 60 Query: 451 VILPR 465 V+ P+ Sbjct: 61 VLDPK 65
>MS152_CAEEL (Q23519) Major sperm protein 152 (MSP)| Length = 126 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +1 Query: 361 VHLVNKSDEYVAFKVKTTSPKRYCVRPNIGVILPR 465 + ++N S + + +KTT+ KR V P GV+ P+ Sbjct: 31 IKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPK 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,043,833 Number of Sequences: 219361 Number of extensions: 730894 Number of successful extensions: 1975 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 1936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1974 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
