ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49g11 |
|---|---|
| Clone Library Name | barley_pub |
>ERI1_CAEEL (O44406) 3'-5' exonuclease eri-1 (EC 3.1.-.-) (Enhanced RNAi| protein) Length = 582 Score = 82.4 bits (202), Expect = 2e-16 Identities = 40/88 (45%), Positives = 52/88 (59%) Frame = +3 Query: 87 FDYFVVLDFEATCEKGAQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFCR 266 FDY + +DFE TC + YP EIIE P+VL+D + SEFRTYVRP +P L++FC Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207 Query: 267 DLTGIPQADVDGGVELAEALRMHAAWLQ 350 T I Q VD EAL+ W++ Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMR 235
>THEX1_HUMAN (Q8IV48) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) (Histone mRNA 3' end-specific exoribonuclease) (Protein 3'hExo) (HEXO) Length = 348 Score = 72.8 bits (177), Expect = 2e-13 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Frame = +3 Query: 87 FDYFVVLDFEATCEKG-AQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFC 263 +DY ++DFEATCE+G + EIIEFP VL++ T ++ F+ YVRP + L+DFC Sbjct: 126 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 185 Query: 264 RDLTGIPQADVDGGVELAEALRMHAAWLQ 350 LTGI Q VD + L+ W++ Sbjct: 186 ISLTGITQDQVDRADTFPQVLKKVIDWMK 214
>THEX1_MOUSE (Q7TMF2) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) (Eri-1 homolog) Length = 345 Score = 71.6 bits (174), Expect = 4e-13 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Frame = +3 Query: 87 FDYFVVLDFEATCEKGAQI-YPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFC 263 +DY ++DFEATCE+G + EIIEFP VL++ T ++ F+ YVRP + L++FC Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLSEFC 182 Query: 264 RDLTGIPQADVDGGVELAEALRMHAAWLQA 353 LTGI Q VD + L+ W+++ Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKS 212
>THEX1_RAT (Q5FVR4) 3' histone mRNA exonuclease 1 (EC 3.1.-.-) (3'-5'| exonuclease ERI1) Length = 345 Score = 70.1 bits (170), Expect = 1e-12 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Frame = +3 Query: 87 FDYFVVLDFEATCEKGAQI-YPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFC 263 +DY ++DFEATCE+G + EIIEFP VL++ + ++ F+ YVRP + L++FC Sbjct: 123 YDYICIIDFEATCEEGNPAEFLHEIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLSEFC 182 Query: 264 RDLTGIPQADVDGGVELAEALRMHAAWLQA 353 LTGI Q VD + L+ W+++ Sbjct: 183 IGLTGITQDQVDRADAFPQVLKKVIEWMKS 212
>CRN4_CAEEL (Q10905) Cell death-related nuclease 4 precursor (EC 3.1.-.-)| Length = 298 Score = 56.6 bits (135), Expect = 1e-08 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Frame = +3 Query: 87 FDYFVVLDFEATCEKGAQIYPQEIIEFPSVLVDGATGNL--DSEFRTYVRPRHHPALTDF 260 FD ++LDFE T + Q YP E+I+F V D + D F YV+P + LT Sbjct: 8 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKN 67 Query: 261 CRDLTGIPQADVDGGVELAEALRMHAAWL 347 C D TGIPQ +D WL Sbjct: 68 CVDFTGIPQRSIDTADTFDVVYEQFQQWL 96
>DPO3_OCEIH (Q8EQU6) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1428 Score = 40.8 bits (94), Expect = 8e-04 Identities = 29/86 (33%), Positives = 40/86 (46%) Frame = +3 Query: 90 DYFVVLDFEATCEKGAQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFCRD 269 D FVV D E T G IIE +V + G G + F ++ P H AL+ D Sbjct: 412 DTFVVFDVETT---GLSAVYDTIIELAAVKIKG--GEIVDRFESFANPHH--ALSQTTID 464 Query: 270 LTGIPQADVDGGVELAEALRMHAAWL 347 LTGI V+ E+A+ L+ W+ Sbjct: 465 LTGITDDMVNDAPEVADVLKDFHTWM 490
>DPO3_MYCPU (P47729) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1435 Score = 33.5 bits (75), Expect = 0.13 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Frame = +3 Query: 87 FDY------FVVLDFEATCEKGAQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPA 248 FDY +VV D E T G E+I+F + ++ G + +++P+ Sbjct: 395 FDYKILDQEYVVYDIETT---GLSPMLNELIQFGASVIKN--GRIIETHHFFIKPKSK-- 447 Query: 249 LTDFCRDLTGIPQADVDGGVELAEAL 326 L F LTGI Q ++ G EL EAL Sbjct: 448 LDSFTTKLTGITQEHLEKGYELQEAL 473
>MURD_RALSO (Q8XVI5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 499 Score = 32.3 bits (72), Expect = 0.28 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 2/99 (2%) Frame = +3 Query: 84 AFDYFVVLDFEATCEKGAQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRP--RHHPALTD 257 AFD D GA + + VL+ G G +F P ++ A+ Sbjct: 362 AFDDIEFFDDSKGTNVGATVAALSGLSKRVVLIAGGDGK-GQDFSPLAAPVAQYARAVVL 420 Query: 258 FCRDLTGIPQADVDGGVELAEALRMHAAWLQASAWARSG 374 RD I A D GVEL EA + AA +A+A A++G Sbjct: 421 IGRDAPRIRAALADSGVELVEAATLEAAVQEAAARAQAG 459
>LHX3_BRARE (Q90421) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)| Length = 398 Score = 31.2 bits (69), Expect = 0.63 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 231 PRHHPALTDFCRDLTGIPQADVDGGVELAEALRMHAA 341 PRH P ++ +G+P A GG ++ +RM AA Sbjct: 327 PRHQPLISSLVYPESGLPMAGQSGGQDMTPGVRMMAA 363
>HIS5_BACHD (Q9K6Z4) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 214 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +3 Query: 129 KGAQIYPQEIIEFPSVLVDGAT---GNLDSEFRTYVRPRHHPALTD 257 KG + P +I FP V DG+T ++ T+ +P +HP LTD Sbjct: 96 KGLSLLPGRVIRFPGVATDGSTYKVPHMGWNQLTFRKP-NHPLLTD 140
>PARC_BACSU (Q45066) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 806 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 165 FPSVLVDGATGNLDSEFRTYVRPRHHPALTDFCRDLTGIPQADVDGGVEL 314 FP++LV+G+TG + + + T + P H + D +P VD +EL Sbjct: 162 FPNLLVNGSTG-ISAGYATDIPPHHLGEVIDAVIKRIQMPSCSVDELMEL 210
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +3 Query: 213 FRTYVRPRHHPALTDFCRDLTGIP 284 F +VRP H + C DLTG P Sbjct: 1116 FSMFVRPHHKQRFSQTCTDLTGRP 1139
>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (HEST2) (Telomerase-associated protein 2) (TP2) Length = 1132 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = +3 Query: 123 CEKGAQIYPQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFCR 266 CE+GA+ ++ F L+DGA G F T VR +TD R Sbjct: 89 CERGAK----NVLAFGFALLDGARGGPPEAFTTSVRSYLPNTVTDALR 132
>ALR2_THETN (Q8R860) Alanine racemase 2 (EC 5.1.1.1)| Length = 388 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = +3 Query: 147 PQEIIEFPSVLVDGATGNLDSEFRTYVRPRHHPALTDFCRDLTGIPQADVDG 302 P +I P DG L + VR ++ P + C D T I +V+G Sbjct: 276 PSKIATLPIGYADGLNRLLSNNHEVLVRGKYVPIVGRVCMDQTMIDVTEVEG 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,599,639 Number of Sequences: 219361 Number of extensions: 643830 Number of successful extensions: 1851 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1818 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1847 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
