ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49g11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 3e-35 Identities = 211/255 (82%) Strand = Plus / Minus Query: 94 acttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgcagg 153 |||||||||| | |||||||||||||||||||||| ||| || |||||||||||||| Sbjct: 24572796 acttcgtggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcagg 24572737 Query: 154 agatcatcgaattcccctccgtcctcgtcgacggtgccaccggcaacctcgactccgagt 213 |||||||||| |||||| | || ||||| |||| ||||| ||| ||||| |||| || Sbjct: 24572736 agatcatcgagttccccgcggtgctcgtggacgccgccacgggccgcctcgtgtccgcgt 24572677 Query: 214 tccgcacctacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctca 273 ||||| |||||||||||||||| ||||||||| ||| |||||||||||| | || |||| Sbjct: 24572676 tccgcgcctacgtccgcccgcgccaccacccgcggctcaccgacttctgccgcgagctca 24572617 Query: 274 ccggcatcccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgc 333 | || ||| | |||| |||||||||| ||| |||| || ||||||||||||| || || Sbjct: 24572616 cggggatcgcccagggcgacgtcgacgccggggtgggcctcgccgaggcgctcctcaggc 24572557 Query: 334 acgccgcgtggctgc 348 ||| || |||||||| Sbjct: 24572556 acgacgagtggctgc 24572542
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 157 bits (79), Expect = 3e-35 Identities = 211/255 (82%) Strand = Plus / Minus Query: 94 acttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgcagg 153 |||||||||| | |||||||||||||||||||||| ||| || |||||||||||||| Sbjct: 153180 acttcgtggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcagg 153121 Query: 154 agatcatcgaattcccctccgtcctcgtcgacggtgccaccggcaacctcgactccgagt 213 |||||||||| |||||| | || ||||| |||| ||||| ||| ||||| |||| || Sbjct: 153120 agatcatcgagttccccgcggtgctcgtggacgccgccacgggccgcctcgtgtccgcgt 153061 Query: 214 tccgcacctacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctca 273 ||||| |||||||||||||||| ||||||||| ||| |||||||||||| | || |||| Sbjct: 153060 tccgcgcctacgtccgcccgcgccaccacccgcggctcaccgacttctgccgcgagctca 153001 Query: 274 ccggcatcccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgc 333 | || ||| | |||| |||||||||| ||| |||| || ||||||||||||| || || Sbjct: 153000 cggggatcgcccagggcgacgtcgacgccggggtgggcctcgccgaggcgctcctcaggc 152941 Query: 334 acgccgcgtggctgc 348 ||| || |||||||| Sbjct: 152940 acgacgagtggctgc 152926
>dbj|AK064632.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H01, full insert sequence Length = 1134 Score = 157 bits (79), Expect = 3e-35 Identities = 211/255 (82%) Strand = Plus / Plus Query: 94 acttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgcagg 153 |||||||||| | |||||||||||||||||||||| ||| || |||||||||||||| Sbjct: 175 acttcgtggtggtggacttcgaggcgacgtgcgagaggggcaggcggatctacccgcagg 234 Query: 154 agatcatcgaattcccctccgtcctcgtcgacggtgccaccggcaacctcgactccgagt 213 |||||||||| |||||| | || ||||| |||| ||||| ||| ||||| |||| || Sbjct: 235 agatcatcgagttccccgcggtgctcgtggacgccgccacgggccgcctcgtgtccgcgt 294 Query: 214 tccgcacctacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctca 273 ||||| |||||||||||||||| ||||||||| ||| |||||||||||| | || |||| Sbjct: 295 tccgcgcctacgtccgcccgcgccaccacccgcggctcaccgacttctgccgcgagctca 354 Query: 274 ccggcatcccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgc 333 | || ||| | |||| |||||||||| ||| |||| || ||||||||||||| || || Sbjct: 355 cggggatcgcccagggcgacgtcgacgccggggtgggcctcgccgaggcgctcctcaggc 414 Query: 334 acgccgcgtggctgc 348 ||| || |||||||| Sbjct: 415 acgacgagtggctgc 429
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 92 ctacttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgca 151 ||||||||||||| | ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 153239 ctacttcgtggtcatcgacttggaggcgacgtgcgagagggggaggaggatatacccgca 153180 Query: 152 ggagatcatcgaattcccctccgtcctcgtcgacggtgccaccggc 197 |||||||||||| ||| |||||||| |||||||||| ||||||||| Sbjct: 153179 ggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 153134 Score = 83.8 bits (42), Expect = 4e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 222 tacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctcaccggcatc 281 |||||||| ||| |||||||| || ||| ||||| | |||| |||| |||||||||||| Sbjct: 153106 tacgtccggccgttgcaccaccgggagctcaccgattactgccgggagctcaccggcatc 153047 Query: 282 ccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgcacgccgcg 341 ||||||| |||||||||| ||||||||| || ||||||||| ||| ||||| |||| Sbjct: 153046 gcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgctgcgcgcgcacgacgcg 152987 Query: 342 tggctg 347 |||||| Sbjct: 152986 tggctg 152981
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 92 ctacttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgca 151 ||||||||||||| | ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 18417874 ctacttcgtggtcatcgacttggaggcgacgtgcgagagggggaggaggatatacccgca 18417815 Query: 152 ggagatcatcgaattcccctccgtcctcgtcgacggtgccaccggc 197 |||||||||||| ||| |||||||| |||||||||| ||||||||| Sbjct: 18417814 ggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 18417769 Score = 83.8 bits (42), Expect = 4e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 222 tacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctcaccggcatc 281 |||||||| ||| |||||||| || ||| ||||| | |||| |||| |||||||||||| Sbjct: 18417741 tacgtccggccgttgcaccaccgggagctcaccgattactgccgggagctcaccggcatc 18417682 Query: 282 ccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgcacgccgcg 341 ||||||| |||||||||| ||||||||| || ||||||||| ||| ||||| |||| Sbjct: 18417681 gcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgctgcgcgcgcacgacgcg 18417622 Query: 342 tggctg 347 |||||| Sbjct: 18417621 tggctg 18417616
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 91.7 bits (46), Expect = 2e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 92 ctacttcgtggtcctagacttcgaggcgacgtgcgagaaaggcgcgcagatctacccgca 151 ||||||||||||| | ||||| |||||||||||||||| || | ||| |||||||| Sbjct: 18577275 ctacttcgtggtcatcgacttggaggcgacgtgcgagagggggaggaggatatacccgca 18577216 Query: 152 ggagatcatcgaattcccctccgtcctcgtcgacggtgccaccggc 197 |||||||||||| ||| |||||||| |||||||||| ||||||||| Sbjct: 18577215 ggagatcatcgagttcgcctccgtcgtcgtcgacggcgccaccggc 18577170 Score = 83.8 bits (42), Expect = 4e-13 Identities = 105/126 (83%) Strand = Plus / Minus Query: 222 tacgtccgcccgcggcaccacccggcgctgaccgacttctgcagggacctcaccggcatc 281 |||||||| ||| |||||||| || ||| ||||| | |||| |||| |||||||||||| Sbjct: 18577142 tacgtccggccgttgcaccaccgggagctcaccgattactgccgggagctcaccggcatc 18577083 Query: 282 ccgcaggcggacgtcgacggcggcgtggagctggccgaggcgctccgcatgcacgccgcg 341 ||||||| |||||||||| ||||||||| || ||||||||| ||| ||||| |||| Sbjct: 18577082 gcgcaggccgacgtcgacgccggcgtggacctccgcgaggcgctgcgcgcgcacgacgcg 18577023 Query: 342 tggctg 347 |||||| Sbjct: 18577022 tggctg 18577017
>gb|AC147225.3| Mus musculus BAC clone RP23-105L19 from chromosome 6, complete sequence Length = 210239 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 258 ttctgcagggacctcaccggcatcccgc 285 ||||||||||||||||||||| |||||| Sbjct: 47338 ttctgcagggacctcaccggcgtcccgc 47311
>gb|AC166254.5| Mus musculus 6 BAC RP24-409O18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 201023 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 258 ttctgcagggacctcaccggcatcccgc 285 ||||||||||||||||||||| |||||| Sbjct: 147466 ttctgcagggacctcaccggcgtcccgc 147439
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 291 gacgtcgacggcggcgtggagctggccg 318 ||||||||||||||||||||| |||||| Sbjct: 9561849 gacgtcgacggcggcgtggaggtggccg 9561822
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 291 gacgtcgacggcggcgtggagctggccg 318 ||||||||||||||||||||| |||||| Sbjct: 26067 gacgtcgacggcggcgtggaggtggccg 26040
>gb|AC123937.3| Mus musculus BAC clone RP23-408M14 from 6, complete sequence Length = 164294 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 258 ttctgcagggacctcaccggcatcccgc 285 ||||||||||||||||||||| |||||| Sbjct: 3185 ttctgcagggacctcaccggcgtcccgc 3158
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.082 Identities = 26/27 (96%) Strand = Plus / Minus Query: 300 ggcggcgtggagctggccgaggcgctc 326 ||||||| ||||||||||||||||||| Sbjct: 3091654 ggcggcgcggagctggccgaggcgctc 3091628 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 302 cggcgtggagctggccgaggcgctc 326 ||||| ||||||||||||||||||| Sbjct: 4851760 cggcgcggagctggccgaggcgctc 4851736
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 ggcggcgtggagctggccgagg 321 |||||||||||||||||||||| Sbjct: 740840 ggcggcgtggagctggccgagg 740861
>ref|XM_472408.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1752 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 1328 cggacgtcgacggcggcgtgg 1348
>ref|NM_021480.4| Mus musculus L-threonine dehydrogenase (Tdh), mRNA Length = 1946 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 1318 gagctggcccaggcgctccgcaagcacgc 1346
>gb|BC058860.1| Mus musculus L-threonine dehydrogenase, mRNA (cDNA clone MGC:60410 IMAGE:30014660), complete cds Length = 1946 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 1318 gagctggcccaggcgctccgcaagcacgc 1346
>gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, complete sequence Length = 215810 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 30362 gagctggcccaggcgctccgcaagcacgc 30334
>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence Length = 189927 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 351 gcctcggcatgggccaggagc 371 ||||||||||||||||||||| Sbjct: 116581 gcctcggcatgggccaggagc 116601
>gb|AY342320.1| Oryza sativa (indica cultivar-group) cell wall invertase 3 (CIN3) mRNA, complete cds Length = 1761 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 1337 cggacgtcgacggcggcgtgg 1357
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13, complete sequence Length = 113960 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 36531 cggacgtcgacggcggcgtgg 36551
>gb|AF134346.2| Mus musculus L-threonine 3-dehydrogenase mRNA, complete cds Length = 1450 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 967 gagctggcccaggcgctccgcaagcacgc 995
>gb|AY116662.1| Mus musculus L-threonine 3-dehydrogenase (Tdh) mRNA, complete cds Length = 1508 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 904 gagctggcccaggcgctccgcaagcacgc 932
>gb|AE005952.1| Caulobacter crescentus CB15 section 278 of 359 of the complete genome Length = 13994 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 301 gcggcgtggagctggccgaggcgct 325 |||||||||| |||||||||||||| Sbjct: 7562 gcggcgtggacctggccgaggcgct 7586
>gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 3 mRNA, complete cds Length = 1911 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 1364 cggacgtcgacggcggcgtgg 1384
>dbj|AK077571.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730451J21 product:L-threonine dehydrogenase, full insert sequence Length = 1553 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 309 gagctggccgaggcgctccgcatgcacgc 337 ||||||||| |||||||||||| |||||| Sbjct: 978 gagctggcccaggcgctccgcaagcacgc 1006
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 20423111 cggacgtcgacggcggcgtgg 20423131
>gb|AY220486.1| Oryza sativa (indica cultivar-group) apoplastic invertase (INV4) gene, complete cds Length = 3848 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 2808 cggacgtcgacggcggcgtgg 2828
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 200 cctcgactccgagttccgcacctacgtcc 228 ||||||| ||||||||||||||| ||||| Sbjct: 63535 cctcgacgccgagttccgcaccttcgtcc 63507
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 cggcgtggagctggccgaggcgctc 326 |||||||||| |||||||||||||| Sbjct: 2705009 cggcgtggagatggccgaggcgctc 2705033
>dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full insert sequence Length = 2289 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 cggacgtcgacggcggcgtgg 309 ||||||||||||||||||||| Sbjct: 1398 cggacgtcgacggcggcgtgg 1418
>dbj|D10016.1|STMHBCPB Streptomyces hygroscopicus genomic DNA for phosphoenolpyruvate phosphomutase Length = 1314 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 ccgtcctcgtcgacggtgccaccgg 196 |||||||||||||||||| |||||| Sbjct: 647 ccgtcctcgtcgacggtgacaccgg 671
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ccaccggcaacctcgactcc 209 |||||||||||||||||||| Sbjct: 3423059 ccaccggcaacctcgactcc 3423040
>ref|NM_184909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1914 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcggacgtcgacggcggcg 306 |||||||||||||||||||| Sbjct: 477 ggcggacgtcgacggcggcg 496
>gb|AY242041.1|AY242040S2 Carex pauciflora external transcribed spacer 1, partial sequence Length = 595 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gaggcgctccgcatgcacgc 337 |||||||||||||||||||| Sbjct: 491 gaggcgctccgcatgcacgc 472
>gb|AY241982.1|AY241981S2 Carex obtusata external transcribed spacer 1, partial sequence Length = 587 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gaggcgctccgcatgcacgc 337 |||||||||||||||||||| Sbjct: 488 gaggcgctccgcatgcacgc 469
>gb|AY241980.1|AY241979S2 Carex leptalea external transcribed spacer 1, partial sequence Length = 591 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gaggcgctccgcatgcacgc 337 |||||||||||||||||||| Sbjct: 492 gaggcgctccgcatgcacgc 473
>gb|AY241978.1|AY241977S2 Carex monostachya external transcribed spacer 1, partial sequence Length = 599 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 318 gaggcgctccgcatgcacgc 337 |||||||||||||||||||| Sbjct: 500 gaggcgctccgcatgcacgc 481
>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete sequence Length = 1194300 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 gacgtcgacggcggcgtgga 310 |||||||||||||||||||| Sbjct: 474065 gacgtcgacggcggcgtgga 474046
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gtggagctggccgaggcgct 325 |||||||||||||||||||| Sbjct: 1744818 gtggagctggccgaggcgct 1744837 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 gaggcaacgacgggcagcacggcg 53 ||||| |||||||||||||||||| Sbjct: 1001537 gaggccacgacgggcagcacggcg 1001514 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tggagctggccgaggcgctc 326 |||||||||||||||||||| Sbjct: 457814 tggagctggccgaggcgctc 457833
>ref|XM_422418.1| PREDICTED: Gallus gallus similar to prion protein interacting protein 1 (LOC424579), mRNA Length = 2098 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caggagatcatcgaattccc 169 |||||||||||||||||||| Sbjct: 1528 caggagatcatcgaattccc 1547
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 cgtggctgcaggcctcggcatggg 363 ||||||||||| |||||||||||| Sbjct: 1916368 cgtggctgcagccctcggcatggg 1916391
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggcggacgtcgacggcggcg 306 |||||||||||||||||||| Sbjct: 31884845 ggcggacgtcgacggcggcg 31884826
>ref|XM_742734.1| Aspergillus fumigatus Af293 chitin biosynthesis protein (Afu6g02510) partial mRNA Length = 1374 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 atcgaattcccctccgtcct 178 |||||||||||||||||||| Sbjct: 136 atcgaattcccctccgtcct 155
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ccaccggcaacctcgactcc 209 |||||||||||||||||||| Sbjct: 2154751 ccaccggcaacctcgactcc 2154770
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 cggcgtggagctggccgaggcgct 325 |||||||||| ||||||||||||| Sbjct: 46587 cggcgtggagatggccgaggcgct 46564
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ccaccggcaacctcgactcc 209 |||||||||||||||||||| Sbjct: 187337 ccaccggcaacctcgactcc 187318
>emb|CR389892.1| Gallus gallus finished cDNA, clone ChEST269d13 Length = 849 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 caggagatcatcgaattccc 169 |||||||||||||||||||| Sbjct: 279 caggagatcatcgaattccc 298
>gb|AY129334.1| Mycobacteriophage Rosebush, complete genome Length = 67480 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tcgacggcggcgtggagctg 314 |||||||||||||||||||| Sbjct: 30461 tcgacggcggcgtggagctg 30480
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggcggacgtcgacggcggcg 306 |||||||||||||||||||| Sbjct: 31975361 ggcggacgtcgacggcggcg 31975342
>gb|AF325915.1|AF325915 Euglena gracilis 5-aminolevulinate synthase (ALAS) mRNA, partial cds Length = 1766 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cctcggcatgggccaggagc 371 |||||||||||||||||||| Sbjct: 144 cctcggcatgggccaggagc 163
>gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, complete sequence Length = 193894 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ccgcgtggctgcaggcctcg 356 |||||||||||||||||||| Sbjct: 77330 ccgcgtggctgcaggcctcg 77349
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acgacgggcagcacggcgcg 55 |||||||||||||||||||| Sbjct: 4612403 acgacgggcagcacggcgcg 4612422
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 gctggccgaggcgctccgcatgca 334 |||||||||||||||| ||||||| Sbjct: 4319746 gctggccgaggcgctcggcatgca 4319769
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 cggcgtggagctggccgaggcgct 325 |||||||||| ||||||||||||| Sbjct: 2895989 cggcgtggagatggccgaggcgct 2896012
>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence Length = 179691 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cgtggagctggccgaggcgc 324 |||||||||||||||||||| Sbjct: 87681 cgtggagctggccgaggcgc 87700
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gtggagctggccgaggcgct 325 |||||||||||||||||||| Sbjct: 2101069 gtggagctggccgaggcgct 2101050
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ggcggacgtcgacggcggcg 306 |||||||||||||||||||| Sbjct: 86098 ggcggacgtcgacggcggcg 86079 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,736,628 Number of Sequences: 3902068 Number of extensions: 1736628 Number of successful extensions: 39552 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37732 Number of HSP's gapped (non-prelim): 1820 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
