ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49f09 |
|---|---|
| Clone Library Name | barley_pub |
>YQGP_BACSU (P54493) Hypothetical protein yqgP| Length = 507 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/89 (35%), Positives = 52/89 (58%) Frame = +3 Query: 309 SSATLEKMGALDWAKVVHQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVR 488 ++ TL GA + ++ Q +WWRL + + LH G+ HL N ++L +G +E+ +G R Sbjct: 202 NTETLVAFGAKE-NSLIAQGEWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGR 260 Query: 489 IGIIYLLSGFGGSVLSALFLRNHYISVGA 575 +IYL +G GS+ S +F + Y S GA Sbjct: 261 FLLIYLAAGITGSIASFVF--SPYPSAGA 287
>RHOM_DROME (P20350) Protein rhomboid (EC 3.4.21.105) (Protein veinlet)| Length = 355 Score = 55.1 bits (131), Expect = 1e-07 Identities = 39/136 (28%), Positives = 56/136 (41%) Frame = +3 Query: 123 RQWWPWLVPTVLGACVSVFAVEMYLNDCPRHGSTLGGDAPCVAGFLRQFSFQPLRENPLL 302 RQ WPW + + +++FA + Y G P+ Sbjct: 98 RQHWPWFILVISIIEIAIFAYDRYTMPAQNFGL------------------------PVP 133 Query: 303 GPSSATLEKMGALDWAKVVHQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGF 482 PS + L + + Q WR FS ++LHA HL N++ LF GI LE G Sbjct: 134 IPSDSVLVY-------RPDRRLQVWRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGT 186 Query: 483 VRIGIIYLLSGFGGSV 530 RIG+IY+ F GS+ Sbjct: 187 ARIGVIYMAGVFAGSL 202
>RHBD2_HUMAN (Q9NX52) Rhomboid-related protein 2 (EC 3.4.21.105) (RRP2)| (Rhomboid-like protein 2) Length = 303 Score = 48.1 bits (113), Expect = 2e-05 Identities = 25/67 (37%), Positives = 40/67 (59%) Frame = +3 Query: 375 WRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSALFLRN 554 WR S + +HAG+ H++ N+ L +GI LE +R+G++YL GS+ S++F Sbjct: 121 WRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPL 180 Query: 555 HYISVGA 575 Y+ VGA Sbjct: 181 RYL-VGA 186
>ROM1_CAEEL (Q19821) Rhomboid-related protein 1 (EC 3.4.21.105)| Length = 356 Score = 48.1 bits (113), Expect = 2e-05 Identities = 26/53 (49%), Positives = 34/53 (64%) Frame = +3 Query: 375 WRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVL 533 WR S ++LHAGL HL+ N++ L +GI LE RIG IYLL+ GS+L Sbjct: 167 WRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLL 219
>RHBD4_HUMAN (P58872) Rhomboid-related protein 4 (EC 3.4.21.105) (Ventrhoid| transmembrane protein) Length = 404 Score = 47.0 bits (110), Expect = 4e-05 Identities = 20/54 (37%), Positives = 34/54 (62%) Frame = +3 Query: 369 QWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSV 530 Q WR + +++HAG+ HL +N++ L +G+ LE G RIG++Y+ GS+ Sbjct: 210 QVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSL 263
>AARA_PROST (P46116) Protein aarA| Length = 281 Score = 46.6 bits (109), Expect = 5e-05 Identities = 21/56 (37%), Positives = 33/56 (58%) Frame = +3 Query: 372 WWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVLSA 539 WWR + LH+ HL N ++L IGI E+ +G ++ IY++SG G ++ SA Sbjct: 68 WWRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSA 123
>RHBD1_HUMAN (O75783) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) Length = 438 Score = 43.1 bits (100), Expect = 6e-04 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +3 Query: 360 HQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSV 530 H+ + WR + +++H GL L N + L IG+ LE G +RI ++YL GS+ Sbjct: 241 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGSL 297
>RHBD1_MOUSE (Q8VC82) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) Length = 373 Score = 42.7 bits (99), Expect = 7e-04 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +3 Query: 360 HQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSV 530 H+ + WR + +++H GL L N + L IG+ LE G +RI ++YL GS+ Sbjct: 176 HRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSL 232
>RHBD4_MOUSE (P58873) Rhomboid-related protein 4 (EC 3.4.21.105) (Ventrhoid| transmembrane protein) Length = 404 Score = 42.4 bits (98), Expect = 0.001 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 369 QWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSV 530 Q WR + +++HAG+ L +N+ L +G+ LE G RIG++Y+ GS+ Sbjct: 210 QAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGSL 263
>ROM2_CAEEL (P34356) Rhomboid-related protein 2 (EC 3.4.21.105)| Length = 435 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/59 (37%), Positives = 35/59 (59%) Frame = +3 Query: 360 HQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVLS 536 H + WRLF+ ++ G+ H+I N++ L IG+ LE + RI I+Y + GS+LS Sbjct: 165 HLPELWRLFTYCLINVGIFHIIFNILIQLAIGVPLELVHRW-RIYILYFMGVLFGSILS 222
>Y3846_ARATH (Q8LB17) Protein At3g58460| Length = 403 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/63 (30%), Positives = 37/63 (58%) Frame = +3 Query: 354 VVHQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSVL 533 ++ + Q +R ++ + H L+H++ NMM+L+ +G LE+ G VR+ + +L +VL Sbjct: 58 IISRFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVL 117 Query: 534 SAL 542 L Sbjct: 118 HLL 120
>RBD2_SCHPO (O74926) Rhomboid protein 2 (EC 3.4.21.-)| Length = 248 Score = 37.0 bits (84), Expect = 0.040 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Frame = +3 Query: 336 ALDWAKVVHQHQWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFG-----FVRIGII 500 +L W ++ + Q + + + V LH ++H++ N +SLL + E++ G V + Sbjct: 41 SLSWIGLLQKRQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPY 100 Query: 501 YLLSGFGGSVLSALFLRNHYISV 569 L G ++ FLR Y+S+ Sbjct: 101 TLFPGIMHLIVYHFFLRKDYVSI 123
>Y3761_ARATH (Q8RXW0) Protein At3g17611| Length = 334 Score = 35.4 bits (80), Expect = 0.12 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +3 Query: 378 RLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFG 479 RLF + H HL+ NMMSLL+ GI+LE G Sbjct: 78 RLFLSAFYHVNEPHLVYNMMSLLWKGIKLETSMG 111
>RHBD1_RAT (O88779) Rhomboid-related protein 1 (EC 3.4.21.105) (RRP)| (Rhomboid-like protein 1) (Fragment) Length = 164 Score = 34.7 bits (78), Expect = 0.20 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +3 Query: 396 WLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLSGFGGSV 530 ++H GL L N + L IG+ LE G +RI ++YL GS+ Sbjct: 1 FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSL 45
>GLPG_ECOLI (P09391) Protein glpG| Length = 276 Score = 34.3 bits (77), Expect = 0.26 Identities = 13/48 (27%), Positives = 31/48 (64%) Frame = +3 Query: 369 QWWRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLS 512 ++WR F+ +H L+H++ N++ ++G +E++ G ++ +I L+S Sbjct: 134 EFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLIS 181
>VINEX_MOUSE (Q9R1Z8) Vinexin (Sorbin and SH3 domain-containing protein 3)| (SH3-containing adapter molecule 1) (SCAM-1) (SH3 domain-containing protein SH3P3) Length = 733 Score = 32.3 bits (72), Expect = 0.99 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%) Frame = -2 Query: 346 QSRAPIFSKVAEEGPRSGFSRSGWKENWRRKPATQG----ASPPRVLPWRGQSL--RYIS 185 +S PI + + + PR + R +++ R+ P Q PP+V+ R S R++ Sbjct: 178 ESGMPIAPRSSVDSPRDWYRRM-FQQIHRKMPDLQLDWTLEDPPKVVSARASSAEPRHLG 236 Query: 184 TAKTETQAPSTVGTSHGHHWRSS 116 T + P T TS G +W S Sbjct: 237 TLQRPASRPGTTETSSGRNWNHS 259
>GLPG_HAEIN (P44783) Protein glpG homolog| Length = 192 Score = 32.0 bits (71), Expect = 1.3 Identities = 12/46 (26%), Positives = 26/46 (56%) Frame = +3 Query: 375 WRLFSCVWLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYLLS 512 WR S +H +H++ N+ G +E+ FG V++ ++Y+++ Sbjct: 51 WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVA 96
>YBL2_STRCI (P33654) Hypothetical 14.2 kDa protein in blaB 3'region| Length = 132 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/68 (26%), Positives = 25/68 (36%) Frame = -2 Query: 334 PIFSKVAEEGPRSGFSRSGWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPS 155 P S +A S ++ WK W R S PR + YIS+ T++ Sbjct: 45 PATSSIANGSSASSWAIRAWKTTWSRTSPNSSRSSPRSPASMASTSSYISSTPYLTRSWW 104 Query: 154 TVGTSHGH 131 HGH Sbjct: 105 VRRALHGH 112
>PA_IAFOM (Q82570) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHEKGINPNYLLSWK-QVLAELQDIENEEKIPKT 357
>PA_IASIN (P13176) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHEKGINPNYLLSWK-QVLAELQDIENEEKIPRT 357
>PA_IANT6 (P03434) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYIVKPHEKGINPNYLLSWK-QVLAELQDIENEEKIPRT 357
>PA_IALE3 (P67922) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHDKGINPNYLLSWK-QLLAELQDIENEEKIPRT 357
>PA_IALE2 (P67921) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHDKGINPNYLLSWK-QLLAELQDIENEEKIPRT 357
>PA_IALE1 (P26122) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHDKGINPNYLLSWK-QVLAELQDIENEEKIPRT 357
>PA_IAKOR (P13170) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYIVKPHEKGINPNYLLSWK-QVLAELQDIENEEKIPRT 357
>PA_IAANN (P21427) Polymerase acidic protein (RNA-directed RNA polymerase| subunit P2) Length = 716 Score = 29.6 bits (65), Expect = 6.4 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 280 GWKENWRRKPATQGASPPRVLPWRGQSLRYISTAKTETQAPST 152 GWKE + KP +G +P +L W+ Q L + + E + P T Sbjct: 316 GWKEPYVVKPHEKGINPNYLLSWK-QVLAELQDIENEEKIPRT 357
>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)| Length = 741 Score = 29.3 bits (64), Expect = 8.4 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = -2 Query: 259 RKPATQGASPPRVLPWRGQSLRYISTAKTETQAPSTV 149 +K T PPR LP RG++L +++T K + + P+++ Sbjct: 211 QKRITSKLQPPRALPVRGRNL-HLATEKLKKEVPASI 246
>ANSP2_MYCTU (P0A4W0) L-asparagine permease 2 (L-asparagine transport protein 2)| Length = 487 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = +3 Query: 333 GALDWAKVVHQHQWWRLFSCV--WLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYL 506 G +D + H +WR F + W A + L+V M+L+ + + E +F I +I L Sbjct: 114 GIVDTTAIAHYCHYWRAFQPIPQWTLALIALLVVLSMNLISVRLFGELEFWASLIKVIAL 173 Query: 507 LSGFGGSVLSALFLRNHY 560 ++ ++ +FL Y Sbjct: 174 VTFL---IVGTVFLAGRY 188
>ANSP2_MYCBO (P0A4W1) L-asparagine permease 2 (L-asparagine transport protein 2)| Length = 487 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Frame = +3 Query: 333 GALDWAKVVHQHQWWRLFSCV--WLHAGLIHLIVNMMSLLFIGIRLEQQFGFVRIGIIYL 506 G +D + H +WR F + W A + L+V M+L+ + + E +F I +I L Sbjct: 114 GIVDTTAIAHYCHYWRAFQPIPQWTLALIALLVVLSMNLISVRLFGELEFWASLIKVIAL 173 Query: 507 LSGFGGSVLSALFLRNHY 560 ++ ++ +FL Y Sbjct: 174 VTFL---IVGTVFLAGRY 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,665,002 Number of Sequences: 219361 Number of extensions: 1176343 Number of successful extensions: 3550 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3469 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3550 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
