ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart49f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa804... 72 2e-09
2ref|XM_476310.1| Oryza sativa (japonica cultivar-group), predic... 72 2e-09
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
6ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 52 0.002
7ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 52 0.002
8ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
9emb|AL732499.6| Zebrafish DNA sequence from clone RP71-1C3 in li... 46 0.12
10dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
11gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA 42 1.9
12ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mR... 42 1.9
13gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, r... 42 1.9
14gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, r... 42 1.9
15emb|BX664619.13| Mouse DNA sequence from clone RP23-349B9 on chr... 42 1.9
16gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12... 42 1.9
17gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome... 42 1.9
18ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protei... 40 7.4
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.4
20emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 i... 40 7.4
21gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 40 7.4
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
23gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromoso... 40 7.4
24emb|AL672147.10| Mouse DNA sequence from clone RP23-434N14 on ch... 40 7.4
25emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for ... 40 7.4
26dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 7.4
27dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone... 40 7.4 
>ref|NM_185693.1| Oryza sativa (japonica cultivar-group), Ozsa8044 predicted mRNA
          Length = 1059

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 184 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
           |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>ref|XM_476310.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 942

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 184 ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
           |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 126 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 177
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 184     ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
               |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 3907430 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3907481



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                   
Query: 184     ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
               |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 3857551 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 3857602



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                           
Query: 93      cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
               |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 3904515 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 3904574

                             
Query: 153     cggagcaagaccgt 166
                |||| ||||||||
Sbjct: 3904575 gggagaaagaccgt 3904588



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                           
Query: 93      cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
               |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 3892692 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 3892751

                             
Query: 153     cggagcaagaccgt 166
                |||| ||||||||
Sbjct: 3892752 gggagaaagaccgt 3892765



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                           
Query: 93      cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
               |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 3854636 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 3854695

                             
Query: 153     cggagcaagaccgt 166
                |||| ||||||||
Sbjct: 3854696 gggagaaagaccgt 3854709



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 115     cgccggcgtgaaggagccaccgagccagtac 145
               |||||||||| ||||||||||||||| ||||
Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 186     ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 231
               ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 3911512 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 3911557
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 184   ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
             |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 13306 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 13357



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                         
Query: 93    cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
             |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 10391 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 10450

                           
Query: 153   cggagcaagaccgt 166
              |||| ||||||||
Sbjct: 10451 gggagaaagaccgt 10464



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 115   cgccggcgtgaaggagccaccgagccagtac 145
             |||||||||| ||||||||||||||| ||||
Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 186   ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 231
             ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 17388 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 17433
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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 184    ctccgagatgcccgagcccatccccatcatcgacctcagccggctgtctgcc 235
              |||||| ||||| |||||||||||| || |||||||||||||||||||||||
Sbjct: 115505 ctccgacatgcctgagcccatccccgtcgtcgacctcagccggctgtctgcc 115556



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                          
Query: 93     cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
              |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 150646 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 150705

                            
Query: 153    cggagcaagaccgt 166
               |||| ||||||||
Sbjct: 150706 gggagaaagaccgt 150719



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                          
Query: 93     cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
              |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 112590 cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 112649

                            
Query: 153    cggagcaagaccgt 166
               |||| ||||||||
Sbjct: 112650 gggagaaagaccgt 112663
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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 93  cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
           |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 29  cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 88

                         
Query: 153 cggagcaagaccgt 166
            |||| ||||||||
Sbjct: 89  gggagaaagaccgt 102
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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                       
Query: 93  cgatcgtgcaagagctggtaggcgccggcgtgaaggagccaccgagccagtacgtgcttc 152
           |||| |||||||||||||  |  ||||||||  ||||||||||||| | |||||||||| 
Sbjct: 29  cgatagtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgcttg 88

                         
Query: 153 cggagcaagaccgt 166
            |||| ||||||||
Sbjct: 89  gggagaaagaccgt 102
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>ref|XM_476311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 115 cgccggcgtgaaggagccaccgagccagtac 145
           |||||||||| ||||||||||||||| ||||
Sbjct: 48  cgccggcgtgcaggagccaccgagccggtac 78



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 186 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 231
           ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 116 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 161
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>emb|AL732499.6| Zebrafish DNA sequence from clone RP71-1C3 in linkage group 19 Contains
              part of a novel gene similar to CSMD (CUB and sushi
              multiple domains protein), complete sequence
          Length = 161104

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 373    agaagagaaacaaaagtactcaaacat 399
              |||||||||||||||||||||| ||||
Sbjct: 149274 agaagagaaacaaaagtactcacacat 149300
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>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full
           insert sequence
          Length = 1303

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 115 cgccggcgtgaaggagccaccgagccagtac 145
           |||||||||| ||||||||||||||| ||||
Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 186 ccgagatgcccgagcccatccccatcatcgacctcagccggctgtc 231
           ||||||| || ||||||||||| | |||||| ||| ||||||||||
Sbjct: 211 ccgagataccggagcccatcccgaccatcgatctcggccggctgtc 256
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>gb|AY119663.1| Drosophila melanogaster SD07726 full insert cDNA
          Length = 3809

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 196  cgagcccatccccatcatcga 216
            |||||||||||||||||||||
Sbjct: 1397 cgagcccatccccatcatcga 1417
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>ref|NM_175954.1| Drosophila melanogaster CG33123-PA (CG33123) mRNA, complete cds
          Length = 3791

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 196  cgagcccatccccatcatcga 216
            |||||||||||||||||||||
Sbjct: 1408 cgagcccatccccatcatcga 1428
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>gb|AC009751.6|AC009751 Drosophila melanogaster, chromosome 2L, region 23F-24A, BAC clone
              BACR26A07, complete sequence
          Length = 172436

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 196    cgagcccatccccatcatcga 216
              |||||||||||||||||||||
Sbjct: 170384 cgagcccatccccatcatcga 170364
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>gb|AC008323.3|AC008323 Drosophila melanogaster, chromosome 2L, region 24D-24D, BAC clone
             BACR03G07, complete sequence
          Length = 170064

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   cgagcccatccccatcatcga 216
             |||||||||||||||||||||
Sbjct: 58306 cgagcccatccccatcatcga 58286
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>emb|BX664619.13| Mouse DNA sequence from clone RP23-349B9 on chromosome 11, complete
              sequence
          Length = 154608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 515    agaacctacagactctggcca 535
              |||||||||||||||||||||
Sbjct: 121935 agaacctacagactctggcca 121955
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>gb|AE003579.3| Drosophila melanogaster chromosome 2L, section 12 of 83 of the complete
             sequence
          Length = 304674

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 196   cgagcccatccccatcatcga 216
             |||||||||||||||||||||
Sbjct: 81523 cgagcccatccccatcatcga 81503
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>gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome 13, complete sequence
          Length = 205164

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    cttatgaccaacaattcaagg 77
             |||||||||||||||||||||
Sbjct: 98174 cttatgaccaacaattcaagg 98154
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>ref|XM_426275.1| PREDICTED: Gallus gallus similar to Gab3 protein; DOS/Gab family
            member 3 (LOC428717), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 198  agcccatccccatcatcgacctca 221
            ||||||||| ||||||||||||||
Sbjct: 1376 agcccatccgcatcatcgacctca 1399
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     acaaaagtactcaaacattg 401
               ||||||||||||||||||||
Sbjct: 2641890 acaaaagtactcaaacattg 2641909
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>emb|BX927075.13| Zebrafish DNA sequence from clone CH211-234G3 in linkage group 3,
             complete sequence
          Length = 182166

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   aaaagtactcaaacattgtc 403
             ||||||||||||||||||||
Sbjct: 72795 aaaagtactcaaacattgtc 72814
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   acaaaagtactcaaacattg 401
             ||||||||||||||||||||
Sbjct: 28204 acaaaagtactcaaacattg 28185
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     acaaaagtactcaaacattg 401
               ||||||||||||||||||||
Sbjct: 2642000 acaaaagtactcaaacattg 2642019
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>gb|AC171012.3| Gallus gallus BAC clone CH261-128I7 from chromosome ul, complete
             sequence
          Length = 231142

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   agcccatccccatcatcgacctca 221
             ||||||||| ||||||||||||||
Sbjct: 67835 agcccatccgcatcatcgacctca 67858
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>emb|AL672147.10| Mouse DNA sequence from clone RP23-434N14 on chromosome X, complete
              sequence
          Length = 192252

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    gagaaacaaaagtactcaaa 396
              ||||||||||||||||||||
Sbjct: 179985 gagaaacaaaagtactcaaa 179966
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>emb|AJ291316.1|OCU291316 Oryctolagus cuniculus partial mRNA for KvLQT1 voltage-gated delayed
           rectifier potassium channel (kvLQT1 gene)
          Length = 463

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 198 agcccatccccatcatcgacctca 221
           |||||||| |||||||||||||||
Sbjct: 134 agcccatctccatcatcgacctca 157
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>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    cctagctttcttgccgaggc 336
              ||||||||||||||||||||
Sbjct: 193802 cctagctttcttgccgaggc 193783
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>dbj|AP003699.1| Homo sapiens genomic DNA, chromosome 6q25, clone: KB761D4, complete
             sequence
          Length = 110025

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   cctagctttcttgccgaggc 336
             ||||||||||||||||||||
Sbjct: 21436 cctagctttcttgccgaggc 21417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,868,450
Number of Sequences: 3902068
Number of extensions: 3868450
Number of successful extensions: 66803
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66634
Number of HSP's gapped (non-prelim): 169
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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