ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49f06 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 163 bits (413), Expect = 3e-40 Identities = 77/139 (55%), Positives = 98/139 (70%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 ++W ST +GNK+LD A++ +KG P++L FSVN SG F GVAEM PVD+ + W Sbjct: 409 SIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW 465 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 466 SQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAS 525 Query: 363 HVSKTSILEDFTFYENRQK 419 + TSI +DF+ YE RQ+ Sbjct: 526 YKHTTSIFDDFSHYEKRQE 544
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 162 bits (411), Expect = 5e-40 Identities = 78/139 (56%), Positives = 96/139 (69%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 N+W ST +GNK+LDAAY+ KG P++L FSVN SG F GVAEM VD+ W Sbjct: 430 NIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW 486 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F V+W VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 487 SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIAS 546 Query: 363 HVSKTSILEDFTFYENRQK 419 + TSI +DF+ YE RQ+ Sbjct: 547 YKHTTSIFDDFSHYEKRQE 565
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 160 bits (406), Expect = 2e-39 Identities = 76/139 (54%), Positives = 98/139 (70%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 ++W ST +GNK+LD+A++ +KG P++L FSVN SG F GVAEM PVD+ + W Sbjct: 409 SIWCSTEHGNKRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW 465 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F V+W VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 466 SQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISS 525 Query: 363 HVSKTSILEDFTFYENRQK 419 + TSI +DF YE RQ+ Sbjct: 526 YKHTTSIFDDFAHYEKRQE 544
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 160 bits (404), Expect = 3e-39 Identities = 78/139 (56%), Positives = 94/139 (67%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 ++W ST +GNK+LDAAY+ KG P++L FSVN SG F GVAEM VD+ W Sbjct: 436 SIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW 492 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552 Query: 363 HVSKTSILEDFTFYENRQK 419 TSI +DF YE RQ+ Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 160 bits (404), Expect = 3e-39 Identities = 78/139 (56%), Positives = 94/139 (67%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 ++W ST +GNK+LDAAY+ KG P++L FSVN SG F GVAEM VD+ W Sbjct: 436 SIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW 492 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552 Query: 363 HVSKTSILEDFTFYENRQK 419 TSI +DF YE RQ+ Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 160 bits (404), Expect = 3e-39 Identities = 78/139 (56%), Positives = 94/139 (67%) Frame = +3 Query: 3 NVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW 182 ++W ST +GNK+LDAAY+ KG P++L FSVN SG F GVAEM VD+ W Sbjct: 436 SIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW 492 Query: 183 QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 362 QDKW G F VKW VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+ Q+LKI Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552 Query: 363 HVSKTSILEDFTFYENRQK 419 TSI +DF YE RQ+ Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Frame = +3 Query: 6 VWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW- 182 VW++ KKL+ A++ A++ + L FSV SG+F G A ++ + +W Sbjct: 379 VWSTLPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWV 432 Query: 183 -----QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQML 347 G F + W +++P H+ NE KPV RD Q+I LE G Q+ Sbjct: 433 LPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLC 492 Query: 348 KIF 356 +F Sbjct: 493 LLF 495
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 55.5 bits (132), Expect = 1e-07 Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 6/123 (4%) Frame = +3 Query: 6 VWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW- 182 VW++ KKL+ A++ A++ + L FSV SG+F G A ++ + +W Sbjct: 376 VWSTLPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWV 429 Query: 183 -----QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQML 347 G F + W +++P H+ NE KPV RD Q+I LE G Q+ Sbjct: 430 LPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLC 489 Query: 348 KIF 356 +F Sbjct: 490 LLF 492
>IL4RA_MOUSE (P16382) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (IL-4-binding protein) (IL4-BP)] Length = 810 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Frame = +3 Query: 138 EMTGPVDFEK-TLEYWQQDK--WNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRD 308 EM PV ++ +E W + + W GSFS ++ P+N+ H + + N Sbjct: 90 EMNRPVQSDRYQMELWAEHRQLWQGSFSPSGNVKPLAPDNLTLHTNVSDEWLLTWNNLYP 149 Query: 309 TQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENR 413 + ++ + I M+ I +E I+ + T+ E R Sbjct: 150 SNNLLYKDLISMVNISREDNPAEFIVYNVTYKEPR 184
>CTNB_URECA (P35224) Beta-catenin| Length = 818 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +3 Query: 102 SVNT-SGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNI-LKHIVLEN 275 SV T GQ++ V EM P+D ++ WQQ+++ G ++ P ++ KH + + Sbjct: 15 SVGTPQGQYMDVGEMP-PMDAKQQTMLWQQNQYMGDSGIQSGATTQAPPSVSSKHGLDDM 73 Query: 276 NEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSK 374 + G+ + SR D +QG +E V + Sbjct: 74 DTGEGMDTSRMMFD--FDQGFSTQAFTQEQVDE 104
>Y939_SULTO (Q973G3) Hypothetical protein ST0939 precursor| Length = 709 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -1 Query: 280 SLFSRTMCLRMLLGTSLTMCHLTENEPFHLSCCQYSRVFSKSTGPVISATPTNCP 116 S FS+ + + + TS T+ HL + +++ Y+ + + + +ISATP++ P Sbjct: 349 SNFSQKVTINVGNVTSYTIKHLKDGVTYYIQIVPYNSLGNGTPSDIISATPSSVP 403
>CAN2_CHICK (Q92178) Calpain-2 catalytic subunit precursor (EC 3.4.22.53)| (Calpain-2 large subunit) (Calcium-activated neutral proteinase 2) (CANP 2) (Calpain M-type) (M-calpain) (Millimolar-calpain) Length = 699 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/104 (19%), Positives = 41/104 (39%) Frame = +3 Query: 216 KWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDF 395 +W+ ++ P N+ K I +G + S D + + K+ K H + E+ Sbjct: 212 EWYELQKAPPNLFKIIQKALQKGSLLGCSIDITSAAETEAVTSQKLVKGHAYSVTGAEEV 271 Query: 396 TFYENRQKLMQEKRXXXXXXXXXVWDSRAPNLVAGEKQQEPKVT 527 F + QKL++ + W+ PN + + ++T Sbjct: 272 NFRGSIQKLIRIRNPWGEVEWTGKWNDNCPNWSGVDPEVRERLT 315
>YFEI_CAEEL (P83502) Hypothetical protein T04A11.12| Length = 327 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = -1 Query: 583 FGFPLMASCCFSPLT-PFGTVTFG--SCCFSPATRFGALLSHTCFWICCCFI 437 F FP + C ++ PFG + F F F +LL +T FW+ CC I Sbjct: 173 FMFPAIGYCSYAAYPFPFGAIIFRIERTFFGLVNNF-SLLFNTLFWMTCCII 223
>MAD1_YARLI (Q6C452) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 704 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +3 Query: 30 NKKLDAAYQEAQAKGSSCPIFLFF-SVNTSGQFVGVAEMTGPVDFEKTLEYWQQDK 194 NKK+ AQ+ S F F N GQF GV + +F ++YW +DK Sbjct: 626 NKKVKVTSMYAQSDEDS---FTFLPDPNHKGQFAGVIDSPLTDEFSNIVDYWVKDK 678
>EPIB_STAEP (P30195) Epidermin biosynthesis protein epiB| Length = 986 Score = 30.0 bits (66), Expect = 5.2 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Frame = +3 Query: 183 QQDKWNGSFSV---KWHIVKDV-----PNNIL------KHIVLENNEGKPVTNSRDTQD- 317 + + W F+ KWHI KDV N +L KH+++ E K R + Sbjct: 622 ETENWLNRFATIREKWHIPKDVIIAFGDNRLLLNLLNDKHLIILKKELKKHGRIRILESF 681 Query: 318 INLEQGIQMLKIFKEHVSKTSILE-DFTFYENRQK 419 IN +ML+I KTS+ E F +NR K Sbjct: 682 INESNNERMLEIVTPLYKKTSLKEQSFIIPKNRNK 716
>Y655_ARCFU (O29602) Hypothetical protein AF0655| Length = 425 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = +3 Query: 303 RDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKL 422 RD QD+++E+ +++LK ++ + + ++ENR+ L Sbjct: 87 RDPQDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVL 126
>RIBD_CHLTR (O84735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 375 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 175 SRVFSKSTGPVISATPTNCPLVFTEKNKNIG 83 SRVF S+G + AT CP + +K K++G Sbjct: 238 SRVFDLSSGSTLFATTQQCPKEYIQKLKDLG 268
>Y441_BUCAI (P57516) Hypothetical UPF0004 protein BU441| Length = 439 Score = 29.3 bits (64), Expect = 8.9 Identities = 23/109 (21%), Positives = 47/109 (43%) Frame = +3 Query: 105 VNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIVLENNEG 284 + S F+ +DFEKT+E+ + ++ SFS + G Sbjct: 299 IQISSDFIVGFPGESEIDFEKTIEFIKNINFDMSFS----------------FIYSARPG 342 Query: 285 KPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKLMQE 431 P +N D D++L++ + L I +E ++ ++L + + Q ++ E Sbjct: 343 TPASNMND--DLDLKEKKRRLYILQERINIQTMLWSRKMFGSIQSVLVE 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,566,252 Number of Sequences: 219361 Number of extensions: 1531151 Number of successful extensions: 4869 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4855 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
