Clone Name | bart49e04 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | YQJG_ECOLI (P42620) Hypothetical protein yqjG | 112 | 6e-25 | 2 | ECM4_YEAST (P36156) Extracellular matrix protein 4 | 89 | 1e-17 | 3 | YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 i... | 74 | 4e-13 | 4 | YG3P_YEAST (P48239) Hypothetical 41.3 kDa protein in RSR1-CYS4 i... | 56 | 7e-08 | 5 | IN21_MAIZE (P49248) IN2-1 protein | 33 | 0.62 | 6 | YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III | 33 | 0.81 | 7 | GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18)... | 31 | 3.1 | 8 | GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.1... | 30 | 4.0 |
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>YQJG_ECOLI (P42620) Hypothetical protein yqjG| Length = 328 Score = 112 bits (281), Expect = 6e-25 Identities = 68/156 (43%), Positives = 86/156 (55%), Gaps = 6/156 (3%) Frame = +1 Query: 145 DEVTDTGAFDRTPSTFRSFVSSDGA------ARFPAVAGRYHLYVSYACPWASRCLAYLK 306 D + G F R+ S FR+++++DGA F A RYHLYVS ACPWA R L K Sbjct: 15 DTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRK 74 Query: 307 LKGLDHAISFSSVKPIFERTRESDDHLGWVFPAAAGEVPGADPDPFNGARSVRDLYEIAS 486 LKGL+ IS S V P+ GW F + PGA D + LY A Sbjct: 75 LKGLEPFISVSVVNPLMLEN-------GWTFDDS---FPGATGDTLYQNEFLYQLYLHAD 124 Query: 487 KNYTGKPTVPVLWDKQLKTVVNNESSEIIRMLNAEF 594 +Y+G+ TVPVLWDK+ T+V+NES+EIIRM N F Sbjct: 125 PHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAF 160
>ECM4_YEAST (P36156) Extracellular matrix protein 4| Length = 370 Score = 89.0 bits (219), Expect = 1e-17 Identities = 64/174 (36%), Positives = 83/174 (47%), Gaps = 32/174 (18%) Frame = +1 Query: 163 GAFDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSS 342 GAF R S+FR +S PA GRY LYVS ACPWA R L LKGL I S Sbjct: 11 GAFKRQVSSFRETISKQHPIYKPA-KGRYWLYVSLACPWAHRTLITRALKGLTSVIGCSV 69 Query: 343 VK-----------PIFERTRESDDHLGWVFPAAAG-------------EVPG-------- 426 V + ++ +S+D L A G E+ Sbjct: 70 VHWHLDEKGWRFLDMEKQLEDSEDFLEHWHDVAGGIRTAKEDSSKSFAEIKNDSQRFMVD 129 Query: 427 ADPDPFNGARSVRDLYEIASKNYTGKPTVPVLWDKQLKTVVNNESSEIIRMLNA 588 A +P G + + DLY + Y+ + TVPVLWD + +T+VNNESSEIIR+LN+ Sbjct: 130 ATNEPHYGYKRISDLYYKSDPQYSARFTVPVLWDLETQTIVNNESSEIIRILNS 183
>YM85_YEAST (Q04806) Hypothetical 42.4 kDa protein in FAA4-HOR7 intergenic| region Length = 366 Score = 73.6 bits (179), Expect = 4e-13 Identities = 58/170 (34%), Positives = 73/170 (42%), Gaps = 30/170 (17%) Frame = +1 Query: 169 FDRTPSTFRSFVSSDGAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSVK 348 F R S FR +S+D PA GRY LYV+ CPWA R L LKGL I S Sbjct: 13 FKRQSSPFREIISADHPIYKPA-KGRYWLYVALPCPWAQRTLITRALKGLAPIIGCSVAH 71 Query: 349 --------PIFERTRESDDHLGWVFPAAAGE----------------------VPGADPD 438 E + W F A G V G D + Sbjct: 72 WHLDDKGWRFLEEGDGKTNERHW-FDIAGGISSVNLNTSTPVANIPNNAHRLLVDGTD-E 129 Query: 439 PFNGARSVRDLYEIASKNYTGKPTVPVLWDKQLKTVVNNESSEIIRMLNA 588 P G + + D Y +Y G+ TVPVLWD + T+VNNESS+II ++N+ Sbjct: 130 PHYGYKRLSDFYFKTKPDYKGRFTVPVLWDLETCTIVNNESSDIIGIMNS 179
>YG3P_YEAST (P48239) Hypothetical 41.3 kDa protein in RSR1-CYS4 intergenic| region Length = 356 Score = 56.2 bits (134), Expect = 7e-08 Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 30/151 (19%) Frame = +1 Query: 226 FPAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAIS------------------------ 333 F GRY++Y + CP+ R + LK L+ + Sbjct: 16 FKPEKGRYYIYGALGCPFTHRAILARSLKKLEPVLGLVLSHWQLDSKGARFLPAPHRPEK 75 Query: 334 -----FSSVKPIFERTRESDDHLGWVFPAAAGEVPGADPDPFNGARSVRDLYEIASKNYT 498 F++ I + + LG V +A DP + +LY + Y Sbjct: 76 YKERFFTATGGIASAKLDESEELGDVNNDSARLFVDGAFDPVENISRLSELYYLNDPKYP 135 Query: 499 G-KPTVPVLWDKQLKTVVNNESSEIIRMLNA 588 G K TVPVLWD + + +VNNES +IIR+LN+ Sbjct: 136 GTKFTVPVLWDSKTRKIVNNESGDIIRILNS 166
>IN21_MAIZE (P49248) IN2-1 protein| Length = 243 Score = 33.1 bits (74), Expect = 0.62 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAISFSSVKPIFERTRESDDHLGWVFPA- 405 P G LY+ Y CP+A R LKGL + ++ + D W Sbjct: 27 PVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAI--------DLQDKPAWYKDKV 78 Query: 406 -AAGEVPGADPDPFNGARSVRDLYEIASKNYTGKPTVP 516 A G VP + D S+ DL N+ G +P Sbjct: 79 YAQGTVPSLEHDSEVRGESL-DLIRYIDSNFDGPALLP 115
>YK67_CAEEL (P34345) Hypothetical protein C29E4.7 in chromosome III| Length = 250 Score = 32.7 bits (73), Expect = 0.81 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 214 GAARFPAVAGRYHLYVSYACPWASRCLAYLKLKGLD 321 G A P G + +Y CPWA R + Y+ KG++ Sbjct: 14 GDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIE 49
>GSTO1_RAT (Q9Z339) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)| (Glutathione-dependent dehydroascorbate reductase) Length = 241 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330 P G+ +Y CP+A R L LK KG+ H I Sbjct: 18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI 51
>GSTO1_MOUSE (O09131) Glutathione transferase omega-1 (EC 2.5.1.18) (GSTO 1-1)| (p28) Length = 240 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +1 Query: 229 PAVAGRYHLYVSYACPWASRCLAYLKLKGLDHAI 330 P G+ +Y CP+A R L LK KG+ H + Sbjct: 18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,435,343 Number of Sequences: 219361 Number of extensions: 801571 Number of successful extensions: 3369 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3367 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)