ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49e02 |
|---|---|
| Clone Library Name | barley_pub |
>ISOA_PSEUM (P26501) Isoamylase precursor (EC 3.2.1.68)| Length = 776 Score = 35.4 bits (80), Expect = 0.13 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 8/138 (5%) Frame = +3 Query: 138 VGDSCL------AARDCGVGLYCGDCAAAGRTRPSCIRDLAIQPTSIVKGLPFNRYSWLV 299 +G+SCL +A +C G Y D A + +R+ ++P + GL W + Sbjct: 406 LGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAI 465 Query: 300 THNSFSIVGEPPRTGVERVTFYNQEDTVTNQLRNGVRGLMLDMYDFSGDVWLCHSLQGQC 479 NS+ + G P F + N+L + + D DFSG L S Sbjct: 466 GGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSP 525 Query: 480 YNFTAFEPAID--TLKEV 527 +N F D TLK+V Sbjct: 526 WNSINFIDVHDGMTLKDV 543
>ISOA_PSEAY (P10342) Isoamylase precursor (EC 3.2.1.68)| Length = 776 Score = 35.4 bits (80), Expect = 0.13 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 8/138 (5%) Frame = +3 Query: 138 VGDSCL------AARDCGVGLYCGDCAAAGRTRPSCIRDLAIQPTSIVKGLPFNRYSWLV 299 +G+SCL +A +C G Y D A + +R+ ++P + GL W + Sbjct: 406 LGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILREFTVRPAAGGSGLDLFAEPWAI 465 Query: 300 THNSFSIVGEPPRTGVERVTFYNQEDTVTNQLRNGVRGLMLDMYDFSGDVWLCHSLQGQC 479 NS+ + G P F + N+L + + D DFSG L S Sbjct: 466 GGNSYQLGGFPQGWSEWNGLFRDSLRQAQNELGSMTIYVTQDANDFSGSSNLFQSSGRSP 525 Query: 480 YNFTAFEPAID--TLKEV 527 +N F D TLK+V Sbjct: 526 WNSINFIDVHDGMTLKDV 543
>Y2075_MYCTU (Q10683) Hypothetical protein Rv2075c/MT2135| Length = 487 Score = 33.1 bits (74), Expect = 0.64 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Frame = +3 Query: 270 LPFNRYSWLVTHNSFSIVGEPPRTGVERVTFYNQEDTVTNQLRNGVRGLMLDMYDF---- 437 +P WL THNSF+ + + + NQ+ ++ QL VR L LD++ Sbjct: 112 VPLRETQWLGTHNSFNSLSD---SFTVSHADSNQQLSLAQQLDIDVRALELDLHYLPRLE 168 Query: 438 ---SGDVWLCHSLQGQCYNF-TAFEPAIDT-LKEVEAFLSE--NPTEIVTIFIED 581 + V +CH L + N EP + T L ++ +L+ + E++ +++ED Sbjct: 169 GHGAPGVTVCHGLGPKNANLGCTVEPLLATVLPQIANWLNAPGHTEEVILLYLED 223
>Y2310_SYNP6 (Q5MZM0) UPF0182 protein syc2310_c| Length = 955 Score = 30.0 bits (66), Expect = 5.4 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +3 Query: 213 TRPSCIRDLAIQPTSIVKGLPFNRYSWLVTHNSFSIVGEPPRT-----GVERVTFYNQED 377 T P+ ++ L +QP I + LP+ + + L T +F + RT + R + Sbjct: 353 TLPAIVQQLVVQPNEIARELPYLKQAILFTRRAFGLDQIETRTFDPQPSLNRAVLAANRE 412 Query: 378 TVTN 389 TV N Sbjct: 413 TVQN 416
>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein| 4.5) (Ultrahigh sulfur keratin-associated protein 4.5) Length = 186 Score = 29.6 bits (65), Expect = 7.0 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%) Frame = +3 Query: 123 PCSCQVG---DSCLAARDCGVGLYCGDCAAAGRTRPSCIRDLAIQPT 254 PC C+ +C C C C + RP C + + QPT Sbjct: 78 PCCCRPSCCQTTCCRTTCCRTTCCCPSCCVSSCCRPQCCQSVCCQPT 124
>MT2_SHEEP (P68302) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.6 bits (65), Expect = 7.0 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +3 Query: 126 CSCQVGDSCLAARDCGVGLYCGDCAAAGRTRPSC 227 CSC G+SC A C C DC A + C Sbjct: 5 CSCTAGESCTCAGSC----KCKDCKCASCKKSCC 34
>MT2_BOVIN (P68301) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)| Length = 61 Score = 29.6 bits (65), Expect = 7.0 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +3 Query: 126 CSCQVGDSCLAARDCGVGLYCGDCAAAGRTRPSC 227 CSC G+SC A C C DC A + C Sbjct: 5 CSCTAGESCTCAGSC----KCKDCKCASCKKSCC 34
>RKHD1_HUMAN (Q86XN8) RING finger and KH domain-containing protein 1| Length = 485 Score = 29.6 bits (65), Expect = 7.0 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Frame = +3 Query: 132 CQVGDSCLAARDCGVGLYCGDCAA--AGRTRPSC 227 C G+ A CG L+C DCA G++ P C Sbjct: 437 CAEGEVMAALVPCGHNLFCMDCAVRICGKSEPEC 470
>LAC4_THACU (Q02081) Laccase 4 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 531 Score = 29.3 bits (64), Expect = 9.2 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Frame = +2 Query: 227 HQGPGHPTHLHREGAAL*QVLMAGDPQFILHRRRTATHRG*EGYILQ-----PGR---HC 382 H+G HP HLH + + L G P ++ RR G G +L+ PG HC Sbjct: 422 HRGADHPIHLHGHVFDIVKSL-GGTPNYVNPPRRDVVRVGGTGVVLRFKADNPGPWFVHC 480 Query: 383 H 385 H Sbjct: 481 H 481
>HHAT_MOUSE (Q8BMT9) Protein-cysteine N-palmitoyltransferase HHAT (EC 2.3.1.-)| (Hedgehog acyltransferase) (Skinny hedgehog protein) Length = 499 Score = 29.3 bits (64), Expect = 9.2 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -1 Query: 373 SWL*NVTLSTPVRGGSPTMENELWV-TSHEYLLKGSPFTMEVGWMARSLMQDGRVLPAAA 197 SWL ++ L + +R S W T +EY L FT+ V R L L Sbjct: 136 SWLCSLLLLSTLRLQSVEEVKRRWYKTENEYYLL--QFTLTV----RCLYYTSFSLELCR 189 Query: 196 QSPQ*RPTPQSRAAKHESP 140 Q P +PTP ++ A H P Sbjct: 190 QPPSAQPTPSAQGASHSYP 208 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,343,273 Number of Sequences: 219361 Number of extensions: 1766107 Number of successful extensions: 4805 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4802 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
