Clone Name | bart49e02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450041.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1666 Score = 539 bits (272), Expect = e-150 Identities = 416/464 (89%) Strand = Plus / Plus Query: 123 ccctgctcctgccaggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctc 182 ||||||||||||||||| ||||||||||||| | |||| ||||||||||| | |||||| Sbjct: 203 ccctgctcctgccaggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctc 262 Query: 183 tactgcggcgattgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggcc 242 ||||||||| ||||||||||| |||||| ||| ||||||||||||||||| |||||||| Sbjct: 263 tactgcggcaattgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcg 322 Query: 243 atccaacccacctccatcgtgaaggggctgccctttaacaggtactcatggctggtgacc 302 ||||| || |||||||| |||||||| |||||||| ||| | |||||||||||||| ||| Sbjct: 323 atccagcctacctccattgtgaagggactgcccttcaaccgctactcatggctggtcacc 382 Query: 303 cacaattcattctccatcgtcggcgaaccgccacgcaccggggttgagagggttacattc 362 ||||| || ||||||||| | ||||| ||| | | |||||| || |||||||| || ||| Sbjct: 383 cacaactccttctccatcataggcgagccgtcgcacaccggagtcgagagggtcacgttc 442 Query: 363 tacaaccaggaagacactgtcaccaaccaattgaggaatggagtgagggggttgatgctg 422 ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 443 tacaaccaggaggacactgtcactaaccaattgaggaatggagtgaggggattgatgctg 502 Query: 423 gatatgtatgacttcagcggtgatgtctggctctgccactccttgcaagggcaatgctac 482 |||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||| Sbjct: 503 gatatgtatgacttcaatgatgatatctggctctgccactccttgcaaggccaatgctac 562 Query: 483 aacttcaccgcttttgaaccagcaattgacacgttgaaagaggtggaagcatttctatct 542 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 563 aacttcactgcttttcaaccagcaattgacacattgaaagaggtggaagcatttctatct 622 Query: 543 gagaatcccacagagattgttacaatattcattgaggattacgt 586 |||||||| |||||||| | ||||||||||||||||||||||| Sbjct: 623 gagaatccgacagagataataacaatattcattgaggattacgt 666
>ref|XM_506634.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1310_F05.17 mRNA Length = 1719 Score = 539 bits (272), Expect = e-150 Identities = 416/464 (89%) Strand = Plus / Plus Query: 123 ccctgctcctgccaggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctc 182 ||||||||||||||||| ||||||||||||| | |||| ||||||||||| | |||||| Sbjct: 249 ccctgctcctgccaggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctc 308 Query: 183 tactgcggcgattgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggcc 242 ||||||||| ||||||||||| |||||| ||| ||||||||||||||||| |||||||| Sbjct: 309 tactgcggcaattgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcg 368 Query: 243 atccaacccacctccatcgtgaaggggctgccctttaacaggtactcatggctggtgacc 302 ||||| || |||||||| |||||||| |||||||| ||| | |||||||||||||| ||| Sbjct: 369 atccagcctacctccattgtgaagggactgcccttcaaccgctactcatggctggtcacc 428 Query: 303 cacaattcattctccatcgtcggcgaaccgccacgcaccggggttgagagggttacattc 362 ||||| || ||||||||| | ||||| ||| | | |||||| || |||||||| || ||| Sbjct: 429 cacaactccttctccatcataggcgagccgtcgcacaccggagtcgagagggtcacgttc 488 Query: 363 tacaaccaggaagacactgtcaccaaccaattgaggaatggagtgagggggttgatgctg 422 ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 489 tacaaccaggaggacactgtcactaaccaattgaggaatggagtgaggggattgatgctg 548 Query: 423 gatatgtatgacttcagcggtgatgtctggctctgccactccttgcaagggcaatgctac 482 |||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||| Sbjct: 549 gatatgtatgacttcaatgatgatatctggctctgccactccttgcaaggccaatgctac 608 Query: 483 aacttcaccgcttttgaaccagcaattgacacgttgaaagaggtggaagcatttctatct 542 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 609 aacttcactgcttttcaaccagcaattgacacattgaaagaggtggaagcatttctatct 668 Query: 543 gagaatcccacagagattgttacaatattcattgaggattacgt 586 |||||||| |||||||| | ||||||||||||||||||||||| Sbjct: 669 gagaatccgacagagataataacaatattcattgaggattacgt 712
>dbj|AK099343.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028L08, full insert sequence Length = 1666 Score = 539 bits (272), Expect = e-150 Identities = 416/464 (89%) Strand = Plus / Plus Query: 123 ccctgctcctgccaggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctc 182 ||||||||||||||||| ||||||||||||| | |||| ||||||||||| | |||||| Sbjct: 203 ccctgctcctgccaggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctc 262 Query: 183 tactgcggcgattgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggcc 242 ||||||||| ||||||||||| |||||| ||| ||||||||||||||||| |||||||| Sbjct: 263 tactgcggcaattgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcg 322 Query: 243 atccaacccacctccatcgtgaaggggctgccctttaacaggtactcatggctggtgacc 302 ||||| || |||||||| |||||||| |||||||| ||| | |||||||||||||| ||| Sbjct: 323 atccagcctacctccattgtgaagggactgcccttcaaccgctactcatggctggtcacc 382 Query: 303 cacaattcattctccatcgtcggcgaaccgccacgcaccggggttgagagggttacattc 362 ||||| || ||||||||| | ||||| ||| | | |||||| || |||||||| || ||| Sbjct: 383 cacaactccttctccatcataggcgagccgtcgcacaccggagtcgagagggtcacgttc 442 Query: 363 tacaaccaggaagacactgtcaccaaccaattgaggaatggagtgagggggttgatgctg 422 ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 443 tacaaccaggaggacactgtcactaaccaattgaggaatggagtgaggggattgatgctg 502 Query: 423 gatatgtatgacttcagcggtgatgtctggctctgccactccttgcaagggcaatgctac 482 |||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||| Sbjct: 503 gatatgtatgacttcaatgatgatatctggctctgccactccttgcaaggccaatgctac 562 Query: 483 aacttcaccgcttttgaaccagcaattgacacgttgaaagaggtggaagcatttctatct 542 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 563 aacttcactgcttttcaaccagcaattgacacattgaaagaggtggaagcatttctatct 622 Query: 543 gagaatcccacagagattgttacaatattcattgaggattacgt 586 |||||||| |||||||| | ||||||||||||||||||||||| Sbjct: 623 gagaatccgacagagataataacaatattcattgaggattacgt 666
>dbj|AK060378.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-D07, full insert sequence Length = 1719 Score = 539 bits (272), Expect = e-150 Identities = 416/464 (89%) Strand = Plus / Plus Query: 123 ccctgctcctgccaggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctc 182 ||||||||||||||||| ||||||||||||| | |||| ||||||||||| | |||||| Sbjct: 249 ccctgctcctgccaggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctc 308 Query: 183 tactgcggcgattgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggcc 242 ||||||||| ||||||||||| |||||| ||| ||||||||||||||||| |||||||| Sbjct: 309 tactgcggcaattgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcg 368 Query: 243 atccaacccacctccatcgtgaaggggctgccctttaacaggtactcatggctggtgacc 302 ||||| || |||||||| |||||||| |||||||| ||| | |||||||||||||| ||| Sbjct: 369 atccagcctacctccattgtgaagggactgcccttcaaccgctactcatggctggtcacc 428 Query: 303 cacaattcattctccatcgtcggcgaaccgccacgcaccggggttgagagggttacattc 362 ||||| || ||||||||| | ||||| ||| | | |||||| || |||||||| || ||| Sbjct: 429 cacaactccttctccatcataggcgagccgtcgcacaccggagtcgagagggtcacgttc 488 Query: 363 tacaaccaggaagacactgtcaccaaccaattgaggaatggagtgagggggttgatgctg 422 ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 489 tacaaccaggaggacactgtcactaaccaattgaggaatggagtgaggggattgatgctg 548 Query: 423 gatatgtatgacttcagcggtgatgtctggctctgccactccttgcaagggcaatgctac 482 |||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||| Sbjct: 549 gatatgtatgacttcaatgatgatatctggctctgccactccttgcaaggccaatgctac 608 Query: 483 aacttcaccgcttttgaaccagcaattgacacgttgaaagaggtggaagcatttctatct 542 |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 609 aacttcactgcttttcaaccagcaattgacacattgaaagaggtggaagcatttctatct 668 Query: 543 gagaatcccacagagattgttacaatattcattgaggattacgt 586 |||||||| |||||||| | ||||||||||||||||||||||| Sbjct: 669 gagaatccgacagagataataacaatattcattgaggattacgt 712
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Minus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctg 457 ||||||||||||||| ||||||||||||||||||||||||| | |||| |||||||||| Sbjct: 1184358 gaatggagtgaggggattgatgctggatatgtatgacttcaatgatgatatctggctctg 1184299 Query: 458 ccactccttgcaagggcaatgctacaacttcaccgcttttg 498 ||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 1184298 ccactccttgcaaggccaatgctacaacttcactgcttttg 1184258 Score = 135 bits (68), Expect = 2e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 499 aaccagcaattgacacgttgaaagaggtggaagcatttctatctgagaatcccacagaga 558 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1183346 aaccagcaattgacacattgaaagaggtggaagcatttctatctgagaatccgacagaga 1183287 Query: 559 ttgttacaatattcattgaggattacgt 586 | | ||||||||||||||||||||||| Sbjct: 1183286 taataacaatattcattgaggattacgt 1183259 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 135 caggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctctactgcggcgat 194 ||||| ||||||||||||| | |||| ||||||||||| | ||||||||||||||| || Sbjct: 1184823 caggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctctactgcggcaat 1184764 Query: 195 tgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggccatccaacccacc 254 ||||||||| |||||| ||| ||||||||||||||||| |||||||| ||||| || ||| Sbjct: 1184763 tgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcgatccagcctacc 1184704 Query: 255 tccat 259 ||||| Sbjct: 1184703 tccat 1184699 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 261 gtgaaggggctgccctttaacaggtactcatggctggtgacccacaattcattctccatc 320 |||||||| |||||||| ||| | |||||||||||||| |||||||| || ||||||||| Sbjct: 1184595 gtgaagggactgcccttcaaccgctactcatggctggtcacccacaactccttctccatc 1184536 Query: 321 gtcggcgaaccgccacgcaccggggttgagagggttacattctacaaccaggaagacact 380 | ||||| ||| | | |||||| || |||||||| || |||||||||||||| |||||| Sbjct: 1184535 ataggcgagccgtcgcacaccggagtcgagagggtcacgttctacaaccaggaggacact 1184476 Query: 381 gtcaccaaccaattgagg 398 ||||| |||||||||||| Sbjct: 1184475 gtcactaaccaattgagg 1184458 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 gagtgagggggttgatgctg 422 |||||||||||||||||||| Sbjct: 18954160 gagtgagggggttgatgctg 18954179
>dbj|AP005789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0563F09 Length = 174905 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Minus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctg 457 ||||||||||||||| ||||||||||||||||||||||||| | |||| |||||||||| Sbjct: 15232 gaatggagtgaggggattgatgctggatatgtatgacttcaatgatgatatctggctctg 15173 Query: 458 ccactccttgcaagggcaatgctacaacttcaccgcttttg 498 ||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 15172 ccactccttgcaaggccaatgctacaacttcactgcttttg 15132 Score = 135 bits (68), Expect = 2e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 499 aaccagcaattgacacgttgaaagaggtggaagcatttctatctgagaatcccacagaga 558 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 14220 aaccagcaattgacacattgaaagaggtggaagcatttctatctgagaatccgacagaga 14161 Query: 559 ttgttacaatattcattgaggattacgt 586 | | ||||||||||||||||||||||| Sbjct: 14160 taataacaatattcattgaggattacgt 14133 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 135 caggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctctactgcggcgat 194 ||||| ||||||||||||| | |||| ||||||||||| | ||||||||||||||| || Sbjct: 15697 caggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctctactgcggcaat 15638 Query: 195 tgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggccatccaacccacc 254 ||||||||| |||||| ||| ||||||||||||||||| |||||||| ||||| || ||| Sbjct: 15637 tgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcgatccagcctacc 15578 Query: 255 tccat 259 ||||| Sbjct: 15577 tccat 15573 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 261 gtgaaggggctgccctttaacaggtactcatggctggtgacccacaattcattctccatc 320 |||||||| |||||||| ||| | |||||||||||||| |||||||| || ||||||||| Sbjct: 15469 gtgaagggactgcccttcaaccgctactcatggctggtcacccacaactccttctccatc 15410 Query: 321 gtcggcgaaccgccacgcaccggggttgagagggttacattctacaaccaggaagacact 380 | ||||| ||| | | |||||| || |||||||| || |||||||||||||| |||||| Sbjct: 15409 ataggcgagccgtcgcacaccggagtcgagagggtcacgttctacaaccaggaggacact 15350 Query: 381 gtcaccaaccaattgagg 398 ||||| |||||||||||| Sbjct: 15349 gtcactaaccaattgagg 15332
>dbj|AP005569.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1310_F05 Length = 107916 Score = 145 bits (73), Expect = 2e-31 Identities = 94/101 (93%) Strand = Plus / Minus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctg 457 ||||||||||||||| ||||||||||||||||||||||||| | |||| |||||||||| Sbjct: 72952 gaatggagtgaggggattgatgctggatatgtatgacttcaatgatgatatctggctctg 72893 Query: 458 ccactccttgcaagggcaatgctacaacttcaccgcttttg 498 ||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 72892 ccactccttgcaaggccaatgctacaacttcactgcttttg 72852 Score = 135 bits (68), Expect = 2e-28 Identities = 83/88 (94%) Strand = Plus / Minus Query: 499 aaccagcaattgacacgttgaaagaggtggaagcatttctatctgagaatcccacagaga 558 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 71940 aaccagcaattgacacattgaaagaggtggaagcatttctatctgagaatccgacagaga 71881 Query: 559 ttgttacaatattcattgaggattacgt 586 | | ||||||||||||||||||||||| Sbjct: 71880 taataacaatattcattgaggattacgt 71853 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Minus Query: 135 caggtcggggattcgtgcttggcggcccgcgactgcggggtgggcctctactgcggcgat 194 ||||| ||||||||||||| | |||| ||||||||||| | ||||||||||||||| || Sbjct: 73417 caggttggggattcgtgctcgtcggcgcgcgactgcggcgccggcctctactgcggcaat 73358 Query: 195 tgcgccgccgccggcaggacgcggccgtcctgcatcagggacctggccatccaacccacc 254 ||||||||| |||||| ||| ||||||||||||||||| |||||||| ||||| || ||| Sbjct: 73357 tgcgccgccaccggcaagacccggccgtcctgcatcagagacctggcgatccagcctacc 73298 Query: 255 tccat 259 ||||| Sbjct: 73297 tccat 73293 Score = 123 bits (62), Expect = 7e-25 Identities = 119/138 (86%) Strand = Plus / Minus Query: 261 gtgaaggggctgccctttaacaggtactcatggctggtgacccacaattcattctccatc 320 |||||||| |||||||| ||| | |||||||||||||| |||||||| || ||||||||| Sbjct: 73189 gtgaagggactgcccttcaaccgctactcatggctggtcacccacaactccttctccatc 73130 Query: 321 gtcggcgaaccgccacgcaccggggttgagagggttacattctacaaccaggaagacact 380 | ||||| ||| | | |||||| || |||||||| || |||||||||||||| |||||| Sbjct: 73129 ataggcgagccgtcgcacaccggagtcgagagggtcacgttctacaaccaggaggacact 73070 Query: 381 gtcaccaaccaattgagg 398 ||||| |||||||||||| Sbjct: 73069 gtcactaaccaattgagg 73052
>ref|NM_126113.2| Arabidopsis thaliana phospholipase C AT5G67130 mRNA, complete cds Length = 1892 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| ||| Sbjct: 600 aatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgc 659 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 660 cattcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 710
>gb|AY081553.1| Arabidopsis thaliana unknown protein (At5g67130) mRNA, complete cds Length = 1311 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| ||| Sbjct: 367 aatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgc 426 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 427 cattcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 477
>gb|AY054674.1| Arabidopsis thaliana Unknown protein (At5g67130; K21H1.9) mRNA, complete cds Length = 1569 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| ||| Sbjct: 424 aatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgc 483 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 484 cattcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 534
>emb|BX831285.1|CNS0A1QF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZD09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1551 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| ||| Sbjct: 415 aatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgc 474 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 475 cattcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 525
>emb|BX831248.1|CNS09ZIT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS71ZF03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1559 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 400 atggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgcc 459 ||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| |||| Sbjct: 428 atggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgcc 487 Query: 460 actccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 | || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 488 attcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 537
>gb|AY087841.1| Arabidopsis thaliana clone 38897 mRNA, complete sequence Length = 1551 Score = 73.8 bits (37), Expect = 6e-10 Identities = 92/111 (82%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| ||| Sbjct: 404 aatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttgc 463 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | ||||||||||| |||| |||| |||||| Sbjct: 464 cattcgcttcgagggcaatgtttcaacttcaccgyttttcaacctgcaatt 514
>dbj|AB020742.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21H1 Length = 74342 Score = 73.8 bits (37), Expect = 6e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctg 457 ||||||||| || ||| | |||||||||||||||||||||| | |||| ||||||| || Sbjct: 33872 gaatggagttagagggctaatgctggatatgtatgacttcaacaatgatatctggctttg 33931 Query: 458 ccactccttgcaagggcaatgctacaacttcaccgcttttg 498 ||| || | | ||||||||| | ||||||||||||||||| Sbjct: 33932 ccattcgcttcgagggcaatgtttcaacttcaccgcttttg 33972
>emb|CR955007.2| Medicago truncatula chromosome 5 clone mte1-58b20, COMPLETE SEQUENCE Length = 108616 Score = 65.9 bits (33), Expect = 1e-07 Identities = 84/101 (83%) Strand = Plus / Plus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctg 457 |||||||||||| || |||||| ||||||||||||||||| |||| | ||||| || Sbjct: 54004 gaatggagtgagaggattgatgttggatatgtatgacttccagaatgatatttggctatg 54063 Query: 458 ccactccttgcaagggcaatgctacaacttcaccgcttttg 498 || || || ||||| |||||||||||||||||||| |||| Sbjct: 54064 tcattcatttcaaggacaatgctacaacttcaccgcctttg 54104
>gb|AY484588.1| Musa acuminata clone MuG9, genomic sequence Length = 73268 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 398 gaatggagtgagggggttgatgctggatatgtatgacttcag 439 |||||| || ||||| |||||||||||||||||||||||||| Sbjct: 18381 gaatggtgttaggggtttgatgctggatatgtatgacttcag 18340
>emb|BX832453.1|CNS09ZUG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1670 Score = 54.0 bits (27), Expect = 5e-04 Identities = 91/111 (81%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 399 aatggagtgagggggttgatgctggatatgtatgacttcagcggtgatgtctggctctgc 458 |||||||| || ||| | ||||||||||||||| |||||| | |||| ||||||| | | Sbjct: 571 aatggagttagagggctaatgctggatatgtattacttcaaccctgatatctggcttt-c 629 Query: 459 cactccttgcaagggcaatgctacaacttcaccgcttttgaaccagcaatt 509 || || | | ||||||||| | |||||||||||||||| |||| |||||| Sbjct: 630 cattcgcttcgagggcaatgtttcaacttcaccgcttttcaacctgcaatt 680
>ref|XM_479671.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1559 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 380 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 427
>ref|XM_506619.1| PREDICTED Oryza sativa (japonica cultivar-group), P0015C07.31 mRNA Length = 1660 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 463 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 510
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 191423 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 191376
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Minus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 106758 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 106711
>dbj|AK067883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124M22, full insert sequence Length = 1659 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 462 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 509
>dbj|AK060348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F04, full insert sequence Length = 1559 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 443 tgatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 |||||||||||| |||||||| || |||||| |||||| |||||||| Sbjct: 380 tgatgtctggctgtgccactcatttcaagggaaatgctttaacttcac 427
>ref|NM_195379.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041L14.20), mRNA Length = 339 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 65 ccgtcgccgcttcctcctctcgc 87 ||||||||||||||||||||||| Sbjct: 199 ccgtcgccgcttcctcctctcgc 177
>gb|BT018185.1| Zea mays clone EL01N0558E02.c mRNA sequence Length = 1219 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 444 gatgtctggctctgccactccttgcaagggcaatgctacaacttcac 490 ||||||||| | |||||||| || ||||| |||||||||||||||| Sbjct: 281 gatgtctggttgtgccactcgttccaaggaaaatgctacaacttcac 327
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 65 ccgtcgccgcttcctcctctcgc 87 ||||||||||||||||||||||| Sbjct: 95340 ccgtcgccgcttcctcctctcgc 95362
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 65 ccgtcgccgcttcctcctctcgc 87 ||||||||||||||||||||||| Sbjct: 6506840 ccgtcgccgcttcctcctctcgc 6506818 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 cgccgccgccggcaggacgcggccg 221 ||||||||||||| ||||||||||| Sbjct: 14610171 cgccgccgccggcgggacgcggccg 14610147
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 65 ccgtcgccgcttcctcctctcgc 87 ||||||||||||||||||||||| Sbjct: 6509226 ccgtcgccgcttcctcctctcgc 6509204 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 cgccgccgccggcaggacgcggccg 221 ||||||||||||| ||||||||||| Sbjct: 14618412 cgccgccgccggcgggacgcggccg 14618388
>gb|AF010469.1|AF010469 Haloferax volcanii heat shock protein (cct2) gene, complete cds Length = 2024 Score = 44.1 bits (22), Expect = 0.53 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 191 cgattgcgccgccgccggc-aggacgcggccgtc 223 |||| |||||||||||||| |||||||||||||| Sbjct: 1496 cgatagcgccgccgccggcgaggacgcggccgtc 1463
>ref|XM_414315.1| PREDICTED: Gallus gallus similar to hypothetical protein, MNCb-4779 (LOC415972), mRNA Length = 1785 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 197 cgccgccgccggcaggacgcggccg 221 ||||||||||||| ||||||||||| Sbjct: 439 cgccgccgccggcgggacgcggccg 463
>gb|AC090424.18| Homo sapiens 12q BAC RP11-428I12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158472 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 aggaatggagtgagggggttg 416 ||||||||||||||||||||| Sbjct: 106035 aggaatggagtgagggggttg 106015
>gb|AE005877.1| Caulobacter crescentus CB15 section 203 of 359 of the complete genome Length = 12778 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 323 cggcgaaccgccacgcaccgg 343 ||||||||||||||||||||| Sbjct: 6040 cggcgaaccgccacgcaccgg 6060
>gb|AC073392.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0072A12, complete sequence Length = 149347 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 197 cgccgccgccggcaggacgcggccg 221 ||||||||||||| ||||||||||| Sbjct: 82633 cgccgccgccggcgggacgcggccg 82609
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ctgcggcgattgcgccgccg 204 |||||||||||||||||||| Sbjct: 2012662 ctgcggcgattgcgccgccg 2012681
>gb|AC115691.8| Mus musculus chromosome 18, clone RP24-286B14, complete sequence Length = 175016 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 cccacagagattgttacaat 568 |||||||||||||||||||| Sbjct: 159898 cccacagagattgttacaat 159917
>ref|XM_472498.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1242 Score = 40.1 bits (20), Expect = 8.2 Identities = 44/52 (84%) Strand = Plus / Plus Query: 415 tgatgctggatatgtatgacttcagcggtgatgtctggctctgccactcctt 466 |||||||||| ||||| |||||| || || ||||||||||||||||||| Sbjct: 377 tgatgctggacatgtacgacttccgcaacgacatctggctctgccactcctt 428
>gb|AY305544.1| Argulus sp. Arg2 RNA polymerase II largest subunit mRNA, partial cds Length = 1336 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 aagcatttctatctgagaat 548 |||||||||||||||||||| Sbjct: 1277 aagcatttctatctgagaat 1258
>emb|AL136538.1|SPAC30 S.pombe chromosome I cosmid c30 Length = 36315 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aaagaggtggaagcatttct 538 |||||||||||||||||||| Sbjct: 31769 aaagaggtggaagcatttct 31750
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 40.1 bits (20), Expect = 8.2 Identities = 44/52 (84%) Strand = Plus / Minus Query: 415 tgatgctggatatgtatgacttcagcggtgatgtctggctctgccactcctt 466 |||||||||| ||||| |||||| || || ||||||||||||||||||| Sbjct: 155897 tgatgctggacatgtacgacttccgcaacgacatctggctctgccactcctt 155846
>emb|Z66525.1|SPAC29E6 S.pombe chromosome I cosmid c29E6 Length = 19514 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aaagaggtggaagcatttct 538 |||||||||||||||||||| Sbjct: 15613 aaagaggtggaagcatttct 15594
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 cccacagagattgttacaat 568 |||||||||||||||||||| Sbjct: 216004 cccacagagattgttacaat 215985
>gb|AC069353.9| Homo sapiens chromosome 8, clone RP11-37B2, complete sequence Length = 170181 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 gagaatcccacagagattgt 562 |||||||||||||||||||| Sbjct: 31119 gagaatcccacagagattgt 31138
>ref|XM_697323.1| PREDICTED: Danio rerio hypothetical protein LOC555172 (LOC555172), mRNA Length = 2053 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cgccgcttcctcctctcgct 88 |||||||||||||||||||| Sbjct: 322 cgccgcttcctcctctcgct 303
>emb|BX296530.7| Zebrafish DNA sequence from clone DKEY-22H2 in linkage group 11, complete sequence Length = 153078 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 556 agattgttacaatattcatt 575 |||||||||||||||||||| Sbjct: 34616 agattgttacaatattcatt 34635
>ref|NM_001019996.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC30.13), partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aaagaggtggaagcatttct 538 |||||||||||||||||||| Sbjct: 1003 aaagaggtggaagcatttct 984
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.2 Identities = 44/52 (84%) Strand = Plus / Minus Query: 415 tgatgctggatatgtatgacttcagcggtgatgtctggctctgccactcctt 466 |||||||||| ||||| |||||| || || ||||||||||||||||||| Sbjct: 21342423 tgatgctggacatgtacgacttccgcaacgacatctggctctgccactcctt 21342372
>gb|BC045469.1| Danio rerio RAB guanine nucleotide exchange factor (GEF) 1, mRNA (cDNA clone MGC:55834 IMAGE:3818062), complete cds Length = 2078 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cgccgcttcctcctctcgct 88 |||||||||||||||||||| Sbjct: 322 cgccgcttcctcctctcgct 303
>ref|NM_200941.1| Danio rerio RAB guanine nucleotide exchange factor (GEF) 1 (rabgef1), mRNA Length = 2078 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 cgccgcttcctcctctcgct 88 |||||||||||||||||||| Sbjct: 322 cgccgcttcctcctctcgct 303
>gb|AC013448.7| Homo sapiens BAC clone RP11-551D18 from 2, complete sequence Length = 129553 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 ttgaaagaggtggaagcatt 535 |||||||||||||||||||| Sbjct: 48734 ttgaaagaggtggaagcatt 48753
>dbj|AK070740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063N02, full insert sequence Length = 1662 Score = 40.1 bits (20), Expect = 8.2 Identities = 44/52 (84%) Strand = Plus / Plus Query: 415 tgatgctggatatgtatgacttcagcggtgatgtctggctctgccactcctt 466 |||||||||| ||||| |||||| || || ||||||||||||||||||| Sbjct: 546 tgatgctggacatgtacgacttccgcaacgacatctggctctgccactcctt 597
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ggcccgcgactgcggggtgg 177 |||||||||||||||||||| Sbjct: 2127349 ggcccgcgactgcggggtgg 2127330 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 cgccgccgccggcaggacgcggcc 220 |||||||||||||||| ||||||| Sbjct: 402047 cgccgccgccggcaggccgcggcc 402070
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence Length = 220253 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 cccacagagattgttacaat 568 |||||||||||||||||||| Sbjct: 79361 cccacagagattgttacaat 79380
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 tctatctgagaatcccacag 555 |||||||||||||||||||| Sbjct: 3410216 tctatctgagaatcccacag 3410235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,656,905 Number of Sequences: 3902068 Number of extensions: 4656905 Number of successful extensions: 87305 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 86636 Number of HSP's gapped (non-prelim): 673 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)