ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 7 gccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtcc 66 |||||||| ||| ||||||||| ||||| ||||||||||||||| | | |||||| ||| Sbjct: 43585 gccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcatcc 43644 Query: 67 ccacggccatccaccgcctcggcggcg 93 |||| |||||||||||||||||||||| Sbjct: 43645 ccaccgccatccaccgcctcggcggcg 43671
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 7 gccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtcc 66 |||||||| ||| ||||||||| ||||| ||||||||||||||| | | |||||| ||| Sbjct: 52190 gccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcatcc 52131 Query: 67 ccacggccatccaccgcctcggcggcg 93 |||| |||||||||||||||||||||| Sbjct: 52130 ccaccgccatccaccgcctcggcggcg 52104
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 7 gccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtcc 66 |||||||| ||| ||||||||| ||||| ||||||||||||||| | | |||||| ||| Sbjct: 7138970 gccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcatcc 7138911 Query: 67 ccacggccatccaccgcctcggcggcg 93 |||| |||||||||||||||||||||| Sbjct: 7138910 ccaccgccatccaccgcctcggcggcg 7138884 Score = 89.7 bits (45), Expect = 4e-15 Identities = 127/155 (81%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||| ||||| |||||||| ||||| | ||||| ||||||||| |||||| Sbjct: 11303022 tgtggcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcg 11302963 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccg 120 || ||||||| ||||||||||||| ||||||||||| || | | ||| || ||| ||| Sbjct: 11302962 gcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccg 11302903 Query: 121 ccctgtccctgcccgcgtccaagctgccgttcctc 155 | |||||||| ||| || ||||||| || |||||| Sbjct: 11302902 cgctgtccctccccacggccaagctccccttcctc 11302868 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||||| ||||||| ||||||||| | |||| Sbjct: 11482307 tgtggcgccacagcctctactacctcacctccatggcgctccggtgcgccgtcaagctcg 11482366 Query: 61 gcgtccccacggccatccaccgcctcggcggc 92 || ||||||| | ||||||||||||||||||| Sbjct: 11482367 gcatccccacagtcatccaccgcctcggcggc 11482398 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 11494830 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 11494771 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 11494770 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 11494730 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 11550526 tgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcgagctcg 11550467 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccg 96 || |||| || | ||||| ||||||||||||||| Sbjct: 11550466 gcatcccgaccacgatccatggcctcggcggcgccg 11550431 Score = 60.0 bits (30), Expect = 4e-06 Identities = 76/92 (82%) Strand = Plus / Minus Query: 64 tccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccgccc 123 ||||||| |||||||||||| ||||||||||| ||| | | ||| ||||| |||| | Sbjct: 11439513 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 11439454 Query: 124 tgtccctgcccgcgtccaagctgccgttcctc 155 ||||||| || |||||||||| ||||||||| Sbjct: 11439453 tgtccctcccgccgtccaagctaccgttcctc 11439422 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| | | ||||| ||||| || ||| ||||||||| | |||| Sbjct: 11331630 tgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgcgccgtcaagctcg 11331571 Query: 61 gcgtccccacggccatccaccgc 83 || ||||||| |||||||||||| Sbjct: 11331570 gcatccccaccgccatccaccgc 11331548 Score = 50.1 bits (25), Expect = 0.004 Identities = 89/111 (80%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgngtccccg 104 ||||||||| | |||||| ||||||| |||||||||||| ||||||| ||| || | | Sbjct: 11355234 tgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctg 11355175 Query: 105 tncgaactggtcgccgccctgtccctgcccgcgtccaagctgccgttcctc 155 ||| || ||||||||||| ||||| || | ||||||| ||||||||| Sbjct: 11355174 cccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcctc 11355124 Score = 40.1 bits (20), Expect = 3.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 |||||||| || |||||| ||||| || |||||||||| ||||||||||| Sbjct: 19031083 tgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccg 19031032
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 93.7 bits (47), Expect = 3e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 7 gccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtcc 66 |||||||| ||| ||||||||| ||||| ||||||||||||||| | | |||||| ||| Sbjct: 7204941 gccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcatcc 7204882 Query: 67 ccacggccatccaccgcctcggcggcg 93 |||| |||||||||||||||||||||| Sbjct: 7204881 ccaccgccatccaccgcctcggcggcg 7204855 Score = 89.7 bits (45), Expect = 4e-15 Identities = 127/155 (81%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||| ||||| |||||||| ||||| | ||||| ||||||||| |||||| Sbjct: 11382211 tgtggcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcg 11382152 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccg 120 || ||||||| ||||||||||||| ||||||||||| || | | ||| || ||| ||| Sbjct: 11382151 gcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccg 11382092 Query: 121 ccctgtccctgcccgcgtccaagctgccgttcctc 155 | |||||||| ||| || ||||||| || |||||| Sbjct: 11382091 cgctgtccctccccacggccaagctccccttcctc 11382057 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||||| ||||||| ||||||||| | |||| Sbjct: 11561496 tgtggcgccacagcctctactacctcacctccatggcgctccggtgcgccgtcaagctcg 11561555 Query: 61 gcgtccccacggccatccaccgcctcggcggc 92 || ||||||| | ||||||||||||||||||| Sbjct: 11561556 gcatccccacagtcatccaccgcctcggcggc 11561587 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 11574019 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 11573960 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 11573959 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 11573919 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 11629715 tgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcgagctcg 11629656 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccg 96 || |||| || | ||||| ||||||||||||||| Sbjct: 11629655 gcatcccgaccacgatccatggcctcggcggcgccg 11629620 Score = 60.0 bits (30), Expect = 4e-06 Identities = 76/92 (82%) Strand = Plus / Minus Query: 64 tccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccgccc 123 ||||||| |||||||||||| ||||||||||| ||| | | ||| ||||| |||| | Sbjct: 11518702 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 11518643 Query: 124 tgtccctgcccgcgtccaagctgccgttcctc 155 ||||||| || |||||||||| ||||||||| Sbjct: 11518642 tgtccctcccgccgtccaagctaccgttcctc 11518611 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| | | ||||| ||||| || ||| ||||||||| | |||| Sbjct: 11410819 tgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgcgccgtcaagctcg 11410760 Query: 61 gcgtccccacggccatccaccgc 83 || ||||||| |||||||||||| Sbjct: 11410759 gcatccccaccgccatccaccgc 11410737 Score = 50.1 bits (25), Expect = 0.004 Identities = 89/111 (80%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgngtccccg 104 ||||||||| | |||||| ||||||| |||||||||||| ||||||| ||| || | | Sbjct: 11434423 tgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctg 11434364 Query: 105 tncgaactggtcgccgccctgtccctgcccgcgtccaagctgccgttcctc 155 ||| || ||||||||||| ||||| || | ||||||| ||||||||| Sbjct: 11434363 cccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcctc 11434313 Score = 40.1 bits (20), Expect = 3.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 |||||||| || |||||| ||||| || |||||||||| ||||||||||| Sbjct: 19189732 tgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccg 19189681
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 89.7 bits (45), Expect = 4e-15 Identities = 127/155 (81%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||| ||||| |||||||| ||||| | ||||| ||||||||| |||||| Sbjct: 89380 tgtggcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcg 89321 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccg 120 || ||||||| ||||||||||||| ||||||||||| || | | ||| || ||| ||| Sbjct: 89320 gcatccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccg 89261 Query: 121 ccctgtccctgcccgcgtccaagctgccgttcctc 155 | |||||||| ||| || ||||||| || |||||| Sbjct: 89260 cgctgtccctccccacggccaagctccccttcctc 89226 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| | | ||||| ||||| || ||| ||||||||| | |||| Sbjct: 117988 tgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgcgccgtcaagctcg 117929 Query: 61 gcgtccccacggccatccaccgc 83 || ||||||| |||||||||||| Sbjct: 117928 gcatccccaccgccatccaccgc 117906 Score = 50.1 bits (25), Expect = 0.004 Identities = 89/111 (80%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgngtccccg 104 ||||||||| | |||||| ||||||| |||||||||||| ||||||| ||| || | | Sbjct: 141592 tgcgccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctg 141533 Query: 105 tncgaactggtcgccgccctgtccctgcccgcgtccaagctgccgttcctc 155 ||| || ||||||||||| ||||| || | ||||||| ||||||||| Sbjct: 141532 cccgaccttgtcgccgccctctccctcccgcccgccaagctcccgttcctc 141482
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||||| ||||||| ||||||||| | |||| Sbjct: 131481 tgtggcgccacagcctctactacctcacctccatggcgctccggtgcgccgtcaagctcg 131422 Query: 61 gcgtccccacggccatccaccgcctcggcggc 92 || ||||||| | ||||||||||||||||||| Sbjct: 131421 gcatccccacagtcatccaccgcctcggcggc 131390 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 118958 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 119017 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 119018 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 119058 Score = 71.9 bits (36), Expect = 1e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 63262 tgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcgagctcg 63321 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccg 96 || |||| || | ||||| ||||||||||||||| Sbjct: 63322 gcatcccgaccacgatccatggcctcggcggcgccg 63357
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||||| ||||||| ||||||||| | |||| Sbjct: 17230 tgtggcgccacagcctctactacctcacctccatggcgctccggtgcgccgtcaagctcg 17171 Query: 61 gcgtccccacggccatccaccgcctcggcggc 92 || ||||||| | ||||||||||||||||||| Sbjct: 17170 gcatccccacagtcatccaccgcctcggcggc 17139 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 4707 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 4766 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 4767 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 4807 Score = 60.0 bits (30), Expect = 4e-06 Identities = 76/92 (82%) Strand = Plus / Plus Query: 64 tccccacggccatccaccgcctcggcggcgccgngtccccgtncgaactggtcgccgccc 123 ||||||| |||||||||||| ||||||||||| ||| | | ||| ||||| |||| | Sbjct: 60024 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 60083 Query: 124 tgtccctgcccgcgtccaagctgccgttcctc 155 ||||||| || |||||||||| ||||||||| Sbjct: 60084 tgtccctcccgccgtccaagctaccgttcctc 60115
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 87.7 bits (44), Expect = 2e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||||| ||||||| ||||||||| | |||| Sbjct: 134 tgtggcgccacagcctctactacctcacctccatggcgctccggtgcgccgtcaagctcg 193 Query: 61 gcgtccccacggccatccaccgcctcggcggc 92 || ||||||| | ||||||||||||||||||| Sbjct: 194 gcatccccacagtcatccaccgcctcggcggc 225
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 118 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 177 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 178 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 218
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 75.8 bits (38), Expect = 6e-11 Identities = 85/101 (84%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| |||||||| ||| | |||||||||||| || | || | Sbjct: 123 tgtggcgccacagcctctactacctcacctccacgggactccgctgcgccatcaagctgg 182 Query: 61 gcgtccccacggccatccaccgcctcggcggcgccgngtcc 101 || ||||||| ||||||||||||||||||||||||| |||| Sbjct: 183 gcatccccaccgccatccaccgcctcggcggcgccgcgtcc 223
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 58.0 bits (29), Expect = 1e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 21 tacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccac 80 ||||||||| ||||| |||||||||||||||| | |||||| |||| ||||| |||||| Sbjct: 120 tacctcacgtccatggggctccgctgcgccgtcaagctcggcatcccgacggcgatccac 179 Query: 81 cgcctcggcggcg 93 |||||| |||| Sbjct: 180 aacctcggtggcg 192
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 ||||||| ||| |||||| ||||| | ||||||||||||| ||||||||||| Sbjct: 9845396 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccg 9845345 Score = 52.0 bits (26), Expect = 9e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 39 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcc 84 ||||| ||||||| ||| ||||||||||||| ||||||||||||| Sbjct: 7318265 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgcc 7318220
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 ||||||| ||| |||||| ||||| | ||||||||||||| ||||||||||| Sbjct: 135638 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccg 135587
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 ||||||| ||| |||||| ||||| | ||||||||||||| ||||||||||| Sbjct: 42031 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccg 41980
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 54.0 bits (27), Expect = 2e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 1 tgtggggccacagcctctggtacctcacgcccatgtcgctccgctgcgccgtcgacctcg 60 ||||| |||||||||||| | | ||||| ||||| || ||| ||||||||| | |||| Sbjct: 117 tgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgcgccgtcaagctcg 176 Query: 61 gcgtccccacggccatccaccgc 83 || ||||||| |||||||||||| Sbjct: 177 gcatccccaccgccatccaccgc 199
>ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 52.0 bits (26), Expect = 9e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 31 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 90 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 92 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 151 Query: 91 gcgccg 96 |||||| Sbjct: 152 gcgccg 157
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 9e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 31 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 90 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 31604087 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 31604146 Query: 91 gcgccg 96 |||||| Sbjct: 31604147 gcgccg 31604152
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 52.0 bits (26), Expect = 9e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 31 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 90 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 17819 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 17878 Query: 91 gcgccg 96 |||||| Sbjct: 17879 gcgccg 17884
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 52.0 bits (26), Expect = 9e-04 Identities = 56/66 (84%) Strand = Plus / Plus Query: 31 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 90 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 117110 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 117169 Query: 91 gcgccg 96 |||||| Sbjct: 117170 gcgccg 117175
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B11 Length = 166004 Score = 52.0 bits (26), Expect = 9e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 39 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcc 84 ||||| ||||||| ||| ||||||||||||| ||||||||||||| Sbjct: 24850 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgcc 24805
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 52.0 bits (26), Expect = 9e-04 Identities = 41/46 (89%) Strand = Plus / Minus Query: 39 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcc 84 ||||| ||||||| ||| ||||||||||||| ||||||||||||| Sbjct: 153269 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgcc 153224
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 52.0 bits (26), Expect = 9e-04 Identities = 65/78 (83%) Strand = Plus / Plus Query: 117 gccgccctgtccctgcccgcgtccaagctgccgttcctcgcccgcctgctgcgccagctc 176 ||||| ||||||||||| ||| ||||||| |||||||||| ||| || |||| | ||| Sbjct: 216 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 275 Query: 177 gccacggcgggcgtcttc 194 | |||| ||||||||||| Sbjct: 276 gtcacgtcgggcgtcttc 293
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence Length = 1503 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 141 aagctgccgttcctcgcccgcctgctgcgccagctcgccacggcgggcgtcttcacc 197 ||||||||||||||| |||||||||||| | |||||| || ||||||| |||||| Sbjct: 231 aagctgccgttcctccgccgcctgctgcggctcctcgccgcgtcgggcgtgttcacc 287
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds Length = 1438 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Plus Query: 141 aagctgccgttcctcgcccgcctgctgcgccagctcgccacggcgggcgtcttcacc 197 ||||||||||||||| |||||||||||| | |||||| || ||||||| |||||| Sbjct: 229 aagctgccgttcctccgccgcctgctgcggctcctcgccgcgtcgggcgtgttcacc 285
>gb|AE012128.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 36 of 460 of the complete genome Length = 10504 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 156 gcccgcctgctgcgccagctcg 177 |||||||||||||||||||||| Sbjct: 7929 gcccgcctgctgcgccagctcg 7950
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 156 gcccgcctgctgcgccagctcg 177 |||||||||||||||||||||| Sbjct: 394827 gcccgcctgctgcgccagctcg 394848 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cctcgcccgcctgctgcgcc 171 |||||||||||||||||||| Sbjct: 2334300 cctcgcccgcctgctgcgcc 2334281
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 tgcgccagctcgccacggcg 185 |||||||||||||||||||| Sbjct: 1923427 tgcgccagctcgccacggcg 1923446
>ref|XM_585828.2| PREDICTED: Bos taurus hypothetical LOC508965 (LOC508965), mRNA Length = 1491 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gttcctcgcccgcctgctgc 168 |||||||||||||||||||| Sbjct: 488 gttcctcgcccgcctgctgc 469
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 cggcgggcgtcttcacctccaccg 204 |||| ||||||||||||||||||| Sbjct: 1856099 cggctggcgtcttcacctccaccg 1856076
>gb|BC116031.1| Bos taurus cDNA clone MGC:139028 IMAGE:8095211, complete cds Length = 1816 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gttcctcgcccgcctgctgc 168 |||||||||||||||||||| Sbjct: 518 gttcctcgcccgcctgctgc 499
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 40.1 bits (20), Expect = 3.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 |||||||| || |||||| ||||| || |||||||||| ||||||||||| Sbjct: 134281 tgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccg 134230
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 40.1 bits (20), Expect = 3.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 45 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccg 96 |||||||| || |||||| ||||| || |||||||||| ||||||||||| Sbjct: 33901 tgcgccgtggagctcggcatccccgacgcgatccaccgccgcggcggcgccg 33850
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 cgcccgcctgctgcgccagctcgc 178 ||||||||||| |||||||||||| Sbjct: 68226 cgcccgcctgcggcgccagctcgc 68203
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 cgcccgcctgctgcgccagctcgc 178 ||||||||||| |||||||||||| Sbjct: 68215 cgcccgcctgcggcgccagctcgc 68192
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 cgcccgcctgctgcgccagctcgc 178 ||||||||||| |||||||||||| Sbjct: 35896 cgcccgcctgcggcgccagctcgc 35873
>gb|AE012325.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 233 of 460 of the complete genome Length = 11015 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cctcgcccgcctgctgcgcc 171 |||||||||||||||||||| Sbjct: 9317 cctcgcccgcctgctgcgcc 9336
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ggtcgccgccctgtccctgcccgc 136 ||||||||||||||| |||||||| Sbjct: 3933372 ggtcgccgccctgtcgctgcccgc 3933349
>ref|XM_944210.1| PREDICTED: Homo sapiens hypothetical LOC90024 (FLJ20021), mRNA Length = 919 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gttcctcgcccgcctgctgcgcca 172 |||||| ||||||||||||||||| Sbjct: 749 gttcctggcccgcctgctgcgcca 772
>ref|XM_028217.4| PREDICTED: Homo sapiens hypothetical LOC90024 (FLJ20021), mRNA Length = 919 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gttcctcgcccgcctgctgcgcca 172 |||||| ||||||||||||||||| Sbjct: 749 gttcctggcccgcctgctgcgcca 772
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gcccgcctgctgcgccagct 175 |||||||||||||||||||| Sbjct: 222396 gcccgcctgctgcgccagct 222415
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 ctcgccacggcgggcgtcttcacctcca 201 |||||| | ||||||||||||||||||| Sbjct: 8081005 ctcgccgccgcgggcgtcttcacctcca 8081032 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cgccgtcgacctcggcgtcc 66 |||||||||||||||||||| Sbjct: 372850 cgccgtcgacctcggcgtcc 372869
>dbj|AK000028.1| Homo sapiens cDNA FLJ20021 fis, clone ADSE01233 Length = 806 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gttcctcgcccgcctgctgcgcca 172 |||||| ||||||||||||||||| Sbjct: 617 gttcctggcccgcctgctgcgcca 640
>ref|NM_207823.1| Eremothecium gossypii AAL072Cp (AAL072C), mRNA Length = 3663 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 gcccgcctgctgcgccagct 175 |||||||||||||||||||| Sbjct: 225 gcccgcctgctgcgccagct 206
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gcctgctgcgccagctcgcc 179 |||||||||||||||||||| Sbjct: 3010826 gcctgctgcgccagctcgcc 3010845
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 tcgcccgcctgctgcgccagctcg 177 ||||| |||||||||||||||||| Sbjct: 1196482 tcgccagcctgctgcgccagctcg 1196505
>dbj|AP001816.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:563D14, complete sequence Length = 123323 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gttcctcgcccgcctgctgcgcca 172 |||||| ||||||||||||||||| Sbjct: 111070 gttcctggcccgcctgctgcgcca 111093 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,326,009 Number of Sequences: 3902068 Number of extensions: 1326009 Number of successful extensions: 33973 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32967 Number of HSP's gapped (non-prelim): 1000 length of query: 261 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 239 effective length of database: 17,147,199,772 effective search space: 4098180745508 effective search space used: 4098180745508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
