Clone Name | bart49d06 |
---|---|
Clone Library Name | barley_pub |
>AMR1_ARATH (Q9ZVJ2) Protein At2g38710| Length = 214 Score = 262 bits (670), Expect = 5e-70 Identities = 120/158 (75%), Positives = 139/158 (87%) Frame = +3 Query: 123 MVVATEEMAVYCFDTLVAHYSGEQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLE 302 MV A EMAVYCFDTLV+HY+ E+ PPPAF+E HPLFVTWKK NG EPRLRGCIGTLE Sbjct: 1 MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLE 60 Query: 303 PRQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHGLI 482 R+++SGFKDYALTSALRDRRF PIQ+KELP L+CTVS+LT+YE A +YLDWEVGKHG+I Sbjct: 61 ARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGII 120 Query: 483 IEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 IEFT+P+ N +RS TYLPEV AHEGWT++EAIDSL+RK Sbjct: 121 IEFTEPETNTKRSATYLPEVPAHEGWTKIEAIDSLVRK 158
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 157 bits (398), Expect = 2e-38 Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Frame = +3 Query: 126 VVATEEMAVYCFDTLVAH-YSGEQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLE 302 +V + EM +CFD L H Y +QP P F +PLFVTWK G + RLRGCIGT Sbjct: 135 MVVSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFS 191 Query: 303 PRQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHGLI 482 + SG ++Y LTSAL+D RF P+ ELP L C+VS+LT +E +YLDWEVG HG+ Sbjct: 192 AMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIR 251 Query: 483 IEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 IEF + + +R+ TYLPEVA +GW ++ IDSL+RK Sbjct: 252 IEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRK 288
>AMER1_HUMAN (Q9Y4X0) AMME syndrome candidate gene 1 protein| Length = 333 Score = 157 bits (398), Expect = 2e-38 Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Frame = +3 Query: 126 VVATEEMAVYCFDTLVAH-YSGEQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLE 302 +V + EM +CFD L H Y +QP P F +PLFVTWK G + RLRGCIGT Sbjct: 124 MVVSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTFS 180 Query: 303 PRQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHGLI 482 + SG ++Y LTSAL+D RF P+ ELP L C+VS+LT +E +YLDWEVG HG+ Sbjct: 181 AMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGIR 240 Query: 483 IEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 IEF + + +R+ TYLPEVA +GW ++ IDSL+RK Sbjct: 241 IEFIN-EKGSKRTATYLPEVAKEQGWDHIQTIDSLLRK 277
>Y5902_DROME (Q9VCF0) Protein CG5902| Length = 243 Score = 145 bits (365), Expect = 1e-34 Identities = 73/157 (46%), Positives = 100/157 (63%), Gaps = 1/157 (0%) Frame = +3 Query: 129 VATEEMAVYCFDTLVAHYSG-EQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEP 305 VA +M ++CF+ L + + P P F +PLFVTWK G + RLRGCIGT Sbjct: 44 VAVPDMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSA 100 Query: 306 RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHGLII 485 ++ G ++YALTSA +D RF+PI ELP L +VSIL +E A +LDW++G HG+ I Sbjct: 101 MELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRI 160 Query: 486 EFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 EF + +R+ TYLP+VA +GW QL+ IDSL+RK Sbjct: 161 EFL-TERGCKRTATYLPQVATEQGWDQLQTIDSLLRK 196
>AMER1_CAEEL (Q22004) Hypothetical protein R166.3 in chromosome II| Length = 200 Score = 137 bits (344), Expect = 3e-32 Identities = 74/160 (46%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Frame = +3 Query: 123 MVVATEEMAVYCFDTLVAHYSGEQPPP-PAFDEGVH-PLFVTWKKATNGSEPRLRGCIGT 296 M A +MAVYCFD + A + E+ PP P V PLFVTWKK G + LRGCIGT Sbjct: 1 MTSANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKK---GHQHDLRGCIGT 57 Query: 297 LEPRQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHG 476 ++ G +YA TSA D RF PI +E+P L+C VS+L +E N+ DW +G+HG Sbjct: 58 FSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHG 117 Query: 477 LIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 + + F D N RS +LPEVA +GW +E ID L+RK Sbjct: 118 VRMNFDDGHRN--RSAVFLPEVAQEQGWNHVETIDHLIRK 155
>Y464_KLULA (Q9URS8) Hypothetical protein KLLA0D02464g| Length = 227 Score = 117 bits (293), Expect = 3e-26 Identities = 60/132 (45%), Positives = 82/132 (62%), Gaps = 9/132 (6%) Frame = +3 Query: 228 PLFVTWKKATNGSEPRLRGCIGTLEPRQIVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 PLFVTWKK G E +LRGCIGT +I G K YAL SAL+D RF+PI+ +EL L C Sbjct: 50 PLFVTWKKLKKG-EYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQLRC 108 Query: 408 TVSILTEYETAL---------NYLDWEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGW 560 ++L++++T + +WE+GKHG+ I+F P N R S T+LPEV +GW Sbjct: 109 GCNLLSQFKTIYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEVIPEQGW 168 Query: 561 TQLEAIDSLMRK 596 Q E ++L+ K Sbjct: 169 DQRETFENLIEK 180
>YKQ3_SCHPO (Q9P6M2) Hypothetical protein C688.03c in chrmosome I| Length = 204 Score = 99.4 bits (246), Expect = 7e-21 Identities = 53/123 (43%), Positives = 73/123 (59%) Frame = +3 Query: 228 PLFVTWKKATNGSEPRLRGCIGTLEPRQIVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 PLFV + G + +LRGCIGT R +V+ ++ +A D RF PI EL LEC Sbjct: 48 PLFVKFASG-KGHDKQLRGCIGTFRARPLVTNLTYFSKQAAFCDERFRPISLGELALLEC 106 Query: 408 TVSILTEYETALNYLDWEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSL 587 + +L ++E + LDWEVG HG+ I+FT +R S TYLP VAA + W Q E ++SL Sbjct: 107 QIDLLVDFEPIDDPLDWEVGIHGVSIKFT--ANGIRYSSTYLPSVAAEQRWDQEETLESL 164 Query: 588 MRK 596 + K Sbjct: 165 IHK 167
>YO289_YEAST (Q12012) Protein YOR289W| Length = 251 Score = 97.8 bits (242), Expect = 2e-20 Identities = 53/138 (38%), Positives = 74/138 (53%), Gaps = 16/138 (11%) Frame = +3 Query: 231 LFVTWKKA--------TNGSEPRLRGCIGTLEPRQIVSGFKDYALTSALRDRRFSPIQSK 386 LF+TWKK TN LRGCIGT I G + Y+L +AL DRRFSPIQ + Sbjct: 69 LFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFSPIQKR 128 Query: 387 ELPYLECTVSILTEYETAL--------NYLDWEVGKHGLIIEFTDPDYNVRRSGTYLPEV 542 EL L+C+ +IL ++T + DWE+GKHG+ + F P S T+LP+V Sbjct: 129 ELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSATFLPDV 188 Query: 543 AAHEGWTQLEAIDSLMRK 596 + W + + +L+ K Sbjct: 189 MPEQHWNKEDTFANLIEK 206
>Y488_METKA (Q8TY18) Protein MK0488| Length = 207 Score = 62.0 bits (149), Expect = 1e-09 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 13/147 (8%) Frame = +3 Query: 171 VAHY--SG---EQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKD 332 + HY SG E+ PP +FVT KK + LRGCIG EP + +V + Sbjct: 21 IVHYLESGKKIEEKPPTQRLAEKRGVFVTLKKYP---DDELRGCIGFPEPIKPLVEATVE 77 Query: 333 YALTSALRDRRFSPIQS-KELPYLECTVSILT-----EYETALNYLDW-EVGKHGLIIEF 491 A+++A D RF P++ E+ ++ VS+LT E + Y++ E+G+HG+I+ Sbjct: 78 AAISAATGDPRFPPMRDPSEMEEIKIEVSVLTPPKKLEVDNPKEYVEKIEIGRHGIIVR- 136 Query: 492 TDPDYNVRRSGTYLPEVAAHEGWTQLE 572 RSG LP+V EGW ++E Sbjct: 137 -----RGARSGLLLPQVPVEEGWDEIE 158
>Y441_NANEQ (Q74M72) Protein NEQ441| Length = 180 Score = 53.1 bits (126), Expect = 6e-07 Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Frame = +3 Query: 234 FVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECT 410 F T K N +LRGC+G P + K AL +A D RF P+Q +EL ++ Sbjct: 37 FTTIKTLDN----QLRGCMGIPYPIYPLWQSLKYSALMAAFEDPRFPPLQKEELDNVKFE 92 Query: 411 VSILTE-----YETALNYLD-WEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLE 572 V++LT L YL+ ++GKHG+II+ SG LP+V EGW E Sbjct: 93 VTVLTPPRKLIVNNPLEYLEKIKIGKHGIIIK------RGPYSGLLLPQVPIEEGWDAKE 146
>Y857_METTH (O26945) Protein MTH857| Length = 192 Score = 53.1 bits (126), Expect = 6e-07 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Frame = +3 Query: 231 LFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 +FVT +K N LRGCIG EP + ++ + A+++A D RF P++ +EL ++ Sbjct: 48 VFVTLEKKGN-----LRGCIGYPEPVKPLIDALIEAAISAATGDPRFPPVKPEELDDIDV 102 Query: 408 TVSILT-----EYETALNYLDW-EVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGW 560 VS+LT E E+ +Y VG GLI+E G LP+VA GW Sbjct: 103 EVSVLTPPEPLEVESPADYPSLIRVGVDGLIVE------RGWARGLLLPQVATEWGW 153
>Y810_METJA (Q58220) Protein MJ0810| Length = 201 Score = 52.4 bits (124), Expect = 1e-06 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Frame = +3 Query: 267 EPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYET-- 437 + LRGCIG EP ++ ++ A+++A +D RF P+ +E+ + VSILT E Sbjct: 53 DKELRGCIGIPEPIMPLIEALEEAAISAATKDPRFPPVTLEEMDSIVVEVSILTPPELIK 112 Query: 438 ---ALNYLD-WEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMRK 596 YL+ ++G+ GLIIE Y R G LP+V GW E + L K Sbjct: 113 VNHPKEYLEKIKIGRDGLIIE-----YGFYR-GLLLPQVPVEYGWDVEEYLAHLCLK 163
>Y1056_AERPE (Q9YD56) Protein APE1056| Length = 203 Score = 50.4 bits (119), Expect = 4e-06 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Frame = +3 Query: 234 FVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECT 410 FVT ++ + G LRGCIG + P +V A+ +A D RF P+ +EL + Sbjct: 33 FVTLERRS-GDGWELRGCIGVVRPVLPLVEAVVTAAVDAASSDPRFEPLSREELDRVRVE 91 Query: 411 VSILTEYETALNYLDW-----EVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGW 560 V++L E EVG HGL +E P Y +G LP+VA EGW Sbjct: 92 VTVLGSMEPLPKKPHERPALVEVGLHGLYVE--KPPY----AGLLLPQVAVDEGW 140
>Y792_SULAC (Q4JAL7) Protein Saci_0792| Length = 227 Score = 49.7 bits (117), Expect = 6e-06 Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Frame = +3 Query: 234 FVTWKKATNGSEPRLRGCIGTLEP----RQIVSGFKDYALTSALRDRRFSPIQSKELPYL 401 FVT +K + LRGCIG +E ++IVS A+ +A D RF P+ EL + Sbjct: 54 FVTIEKIED-ERTSLRGCIGYVEAVAPLKEIVS---KAAVAAAFSDPRFPPLSKSELNDI 109 Query: 402 ECTVSILTEYETALNYLDWE------VGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGW 560 V+ILT+ E W+ VG+ GLI+E Y + SG LP+VA+ W Sbjct: 110 LIEVTILTKPEEISVKDRWKLPSFINVGEDGLIVE-----YGIMYSGLLLPQVASEYCW 163
>Y3591_METAC (Q8TK33) Protein MA3591| Length = 199 Score = 48.1 bits (113), Expect = 2e-05 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 7/136 (5%) Frame = +3 Query: 201 PPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEPRQIVS-GFKDYALTSALRDRRFSPI 377 PP F E +FVT + + LRGCIG P + D A+++A+RD RF P+ Sbjct: 38 PPVFGEN-RGVFVTLTE-----KGMLRGCIGHPYPDSTLEQAIIDSAISAAVRDPRFPPV 91 Query: 378 QSKELPYLECTVSILTEYETALNYL------DWEVGKHGLIIEFTDPDYNVRRSGTYLPE 539 +EL L V+ILT+ E +N E+GKHGLI++ G LP+ Sbjct: 92 GGEELESLIVEVTILTQPE-KINAPPKELPDKVEIGKHGLIVK------QGYCQGLLLPQ 144 Query: 540 VAAHEGWTQLEAIDSL 587 VA ++++ID L Sbjct: 145 VAPE---NEMDSIDFL 157
>Y174_PYRKO (Q5JFK7) Protein TK0174| Length = 205 Score = 47.4 bits (111), Expect = 3e-05 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Frame = +3 Query: 231 LFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 +FVT + + LRGCIG P +V A+ +A+ D RF P+Q +EL L Sbjct: 46 VFVTLNRHNVPPQMALRGCIGFPLPIYPLVEATIKAAIYAAVDDPRFPPVQPEELDELTV 105 Query: 408 TVSILTEYETALNYLDW-----EVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLE 572 VS+LT E + +VG+ GL+IE SG LP+V GW + E Sbjct: 106 EVSVLTPPELVEGPPEGRPKKIKVGRDGLLIE------KGIYSGLLLPQVPVEWGWDEEE 159
>Y1444_AQUAE (O67431) Protein aq_1444| Length = 195 Score = 46.6 bits (109), Expect = 5e-05 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Frame = +3 Query: 267 EPRLRGCIGTLEPRQIVSGFKDYA-LTSALRDRRFSPIQSKELPYLECTVSILT---EYE 434 E LRGCIG P + Y+ L +A +D RF P++ +E + +++LT E + Sbjct: 48 EHNLRGCIGVPLPVYPLWYATVYSSLQAAFQDPRFYPLKKEEFDKVLWEITLLTPPEELK 107 Query: 435 TALNYL--DWEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLEAID 581 L E+GKHGLIIE + G LP+V GW+ +E ++ Sbjct: 108 VPKEELPEQIEIGKHGLIIE------KGEQKGLLLPQVPVEYGWSPVEFLE 152
>Y010_PYRHO (O57770) Protein PH0010| Length = 206 Score = 46.6 bits (109), Expect = 5e-05 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 9/136 (6%) Frame = +3 Query: 192 QPP---PPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRD 359 +PP PP E + +FVT + + LRGCIG P +V A+ SA+ D Sbjct: 32 EPPKDTPPELWEKMG-VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDD 90 Query: 360 RRFSPIQSKELPYLECTVSILTEYETALNYLD-----WEVGKHGLIIEFTDPDYNVRRSG 524 RF P++ +E+ L VS+LT E + +VG+ GLI+E SG Sbjct: 91 PRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSG 144 Query: 525 TYLPEVAAHEGWTQLE 572 LP+V GW + E Sbjct: 145 LLLPQVPVEWGWDEEE 160
>Y229_SULTO (Q976G0) Protein ST0229| Length = 230 Score = 46.2 bits (108), Expect = 7e-05 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Frame = +3 Query: 261 GSEPRLRGCIGTLEP----RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTE 428 G+ LRGCIG +E ++IVS A+ +A D RF P+ E + V++LT+ Sbjct: 66 GNSTSLRGCIGYVEAVAPLKEIVS---KAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTK 122 Query: 429 YETALNYLDWE------VGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQ 566 + WE VG+ GLI+E Y + SG LP+V W + Sbjct: 123 PQEIDVENRWELPKKIKVGEDGLIVE-----YGILYSGLLLPQVPMEYCWDE 169
>Y236_THEAC (Q9HLJ2) Protein Ta0236| Length = 206 Score = 45.4 bits (106), Expect = 1e-04 Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%) Frame = +3 Query: 189 EQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEPRQ-IVSGFKDYALTSALRDRR 365 + P P F E H +F T + LRGCIG EP + G ++ +A D R Sbjct: 40 DPPADPIFQEK-HGVFTTINTYPGNT---LRGCIGFPEPYYPLGEGIIRSSIYAATEDPR 95 Query: 366 FSPIQSKELPYLECTVSILTE-YETALNYLD----WEVGKHGLIIEFTDPDYNVRRSGTY 530 F P++ E+ ++ VSILT+ E +N D +G+ GLI + SG Sbjct: 96 FEPMKIDEISHVTFEVSILTQPVEITVNPEDRPKAVHIGRDGLIAVYNG------ASGLL 149 Query: 531 LPEVAAHEGWTQLEAIDSLMRK 596 LP+VA E +++L K Sbjct: 150 LPQVATEYRMNPEEFLEALCEK 171
>Y193_SULSO (Q980T4) Protein SSO0193| Length = 227 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Frame = +3 Query: 234 FVTWKKATNGSEPRLRGCIGTLEP----RQIVSGFKDYALTSALRDRRFSPIQSKELPYL 401 FVT +K + LRGCIG +E +QI + A +A D RF+P+Q EL + Sbjct: 54 FVTLEKIAYNTSS-LRGCIGYVEAVAPLKQIAASA---AKAAAFSDPRFNPLQEDELANI 109 Query: 402 ECTVSILTEYETALNYLDWE------VGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWT 563 V++LT+ E W+ VG+ GLI+E + SG LP+V W Sbjct: 110 IIEVTVLTKPEEIKVKDRWDLPKIIKVGEDGLIVE-----KGILHSGLLLPQVPMEYCWD 164 Query: 564 Q 566 + Sbjct: 165 E 165
>Y1956_THETN (Q8R8N9) Protein TTE1956| Length = 458 Score = 45.1 bits (105), Expect = 2e-04 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Frame = +3 Query: 180 YSGEQPPPPAFDEGVHP----LFVTWKKATNGSEPRLRGCIGTLEPRQ--IVSGFKDYAL 341 Y P P E ++ +FVT K + LRGCIGT+ P++ + A+ Sbjct: 303 YRRPMPVPEGLPEEMYRRKAGVFVTLHK-----KGELRGCIGTVVPQKKNVAEEIIRNAI 357 Query: 342 TSALRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWEVGKHGLIIEFTDPDYNVRRS 521 ++ D RF P++ +ELP +E +V +L + + + + ++G+I+ R+ Sbjct: 358 SAGFEDPRFPPVREEELPEIEYSVDVLMPTQPVKSKDELDPKRYGVIVR------KGFRA 411 Query: 522 GTYLPEV 542 G LP++ Sbjct: 412 GLLLPDI 418
>Y484_METMA (Q8PZK8) Protein MM0484| Length = 199 Score = 44.7 bits (104), Expect = 2e-04 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 11/145 (7%) Frame = +3 Query: 186 GEQPPPPAFDEGVHPLFVTWKKA----TNGSEPRLRGCIGTLEPRQIVS-GFKDYALTSA 350 G+ P P A + P+F ++ T G LRGCIG P + D A+++A Sbjct: 25 GKSPRPDASGVELSPVFEEYRGVFVTLTEGG--LLRGCIGHPYPDSTLKEAILDSAISAA 82 Query: 351 LRDRRFSPIQSKELPYLECTVSILTEYETALNYLDWE------VGKHGLIIEFTDPDYNV 512 RD RF ++ E+ + V+ILT+ E +N E +GKHGLI++ Sbjct: 83 TRDPRFPTVEQDEMKNILVEVTILTQPEK-INASPKELPDKVEIGKHGLIVK------QG 135 Query: 513 RRSGTYLPEVAAHEGWTQLEAIDSL 587 G LP+VA +++ID L Sbjct: 136 YCQGLLLPQVAPE---NDMDSIDFL 157
>Y1979_PYRFU (Q8TZL1) Protein PF1979| Length = 210 Score = 44.3 bits (103), Expect = 3e-04 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 9/136 (6%) Frame = +3 Query: 192 QPP---PPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRD 359 +PP PP E + +FVT + + LRGCIG P +V A+ +A+ D Sbjct: 31 EPPKDIPPELWEKMG-VFVTLNRHNVPPQAALRGCIGFPLPIYPLVKATIKAAIYAAVDD 89 Query: 360 RRFSPIQSKELPYLECTVSILTEYETALNYLD-----WEVGKHGLIIEFTDPDYNVRRSG 524 RF P++ +E+ + VS+LT E + +VG+ GLI+E +G Sbjct: 90 PRFPPVKLEEMNNIVVEVSVLTPPELIEGPPEERPKKIKVGRDGLIVE------KGIYTG 143 Query: 525 TYLPEVAAHEGWTQLE 572 LP+VA GW + E Sbjct: 144 LLLPQVAVEWGWDEEE 159
>Y1551_THEMA (Q9X1N7) Protein TM1551| Length = 174 Score = 44.3 bits (103), Expect = 3e-04 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Frame = +3 Query: 234 FVTWKKATNGSEPRLRGCIGTLEPRQ--IVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 FVT K T+GS LRGCIGT P + + +D A+ +A +D RF P+ EL + Sbjct: 43 FVTLHK-TDGS---LRGCIGTYLPTKPNLALEIRDNAIAAATQDPRFPPVSPDELDDIVV 98 Query: 408 TVSILTEYETALNYLDWEVGKHGLII 485 V IL+ E + + + K+G+I+ Sbjct: 99 HVDILSPPEPVRDISELDPKKYGVIV 124
>Y1384_THEVO (Q978N1) Protein TV1384| Length = 201 Score = 44.3 bits (103), Expect = 3e-04 Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 6/142 (4%) Frame = +3 Query: 189 EQPPPPAFDEGVHPLFVTWKKATNGSEPRLRGCIGTLEPR-QIVSGFKDYALTSALRDRR 365 E P P F E H +F T + +LRGCIG EP ++ G ++ +A D R Sbjct: 35 EVPDDPIFHEK-HGVFTT---INTYPDNQLRGCIGFPEPYYELGEGIIKSSIYAATDDPR 90 Query: 366 FSPIQSKELPYLECTVSILT-EYETALNYLD----WEVGKHGLIIEFTDPDYNVRRSGTY 530 F P++ EL + +SILT E +N + VGK G+I + SG Sbjct: 91 FDPMEPDELNRVTFELSILTVPQEVTVNPEERPKAITVGKDGIIAVYNG------ASGLL 144 Query: 531 LPEVAAHEGWTQLEAIDSLMRK 596 LP+VA + E +++L K Sbjct: 145 LPQVATEYRMSAEEFLEALCEK 166
>Y010_PYRAB (Q9V2R5) Protein PYRAB00100| Length = 205 Score = 43.9 bits (102), Expect = 4e-04 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Frame = +3 Query: 231 LFVTWKKATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLEC 407 +FVT + + LRGCIG P +V A+ SA+ D RF P++ +E+ + Sbjct: 46 VFVTLNRHNVPPQTALRGCIGFPLPIYPLVKATIKAAIYSAVDDPRFPPVKLEEMDNIIV 105 Query: 408 TVSILTEYETALNYLD-----WEVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLE 572 VS+LT E + +VG+ GLI+E SG LP+V GW + E Sbjct: 106 EVSVLTPPELIEGPPEERPKKIKVGRDGLIVE------KGIYSGLLLPQVPIEWGWDEEE 159
>Y1969_ARCFU (O28310) Protein AF1969| Length = 202 Score = 41.6 bits (96), Expect = 0.002 Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 12/147 (8%) Frame = +3 Query: 141 EMAVYCFDTLVAHYSGEQPPPPAFDEGVHP----LFVTWKKATNGSEPRLRGCIGTLEP- 305 E AV + HY E+ +GV +F T K N LRGCIG P Sbjct: 11 EKAVRLAREAIEHYLEERKILQKRLDGVFSQKRGVFTTLTKHGN-----LRGCIGFPYPV 65 Query: 306 RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILTEYE-------TALNYLDWEV 464 +++ + A+ +A+ D RF P++ E+ + V+ILT E N++ E+ Sbjct: 66 KRLDEAIIESAIAAAVDDPRFEPVRLSEMNEIIVEVTILTPPERIDAKPKDLPNHV--EI 123 Query: 465 GKHGLIIEFTDPDYNVRRSGTYLPEVA 545 G+HGLI++ SG LP+VA Sbjct: 124 GRHGLIVKMGP------FSGLLLPQVA 144
>Y745_PYRAE (Q8ZYJ4) Protein PAE0745| Length = 213 Score = 40.0 bits (92), Expect = 0.005 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 10/118 (8%) Frame = +3 Query: 249 KATNGSEPRLRGCIGTLEP-RQIVSGFKDYALTSALRDRRFSPIQSKELPYLECTVSILT 425 ++ +G + LRGCIG E R + A+ + +D RF ++ +EL + VSIL+ Sbjct: 52 ESIHGDKYELRGCIGYPEGYRNTLYATVFSAIGACCQDPRFPALRREELASVIFEVSILS 111 Query: 426 EYETALNYLDW---------EVGKHGLIIEFTDPDYNVRRSGTYLPEVAAHEGWTQLE 572 LN L+ EVG+HGL+++ SG LP+V E W+ E Sbjct: 112 P----LNLLEVDPRKYPEIIEVGRHGLVVK------RGPYSGLLLPQVPVEECWSPEE 159
>Y1420_CLOAB (Q97J66) Protein CAC1420| Length = 468 Score = 37.0 bits (84), Expect = 0.043 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Frame = +3 Query: 231 LFVTWKKATNGSEPRLRGCIGTLEP--RQIVSGFKDYALTSALRDRRFSPIQSKELPYLE 404 +FV+ KK + LRGCIGT+ P I A+ + L D RF + EL ++ Sbjct: 337 VFVSLKKFGD-----LRGCIGTIFPVTDNIAEEIIRNAIEAGLNDPRFYEVGKDELVDID 391 Query: 405 CTVSILTEYETALNYLDWEVGKHGLIIEFTDPDYNVRRSGTYLPEV 542 +V +L E E+A + + K+G+I+ + R+ G LP + Sbjct: 392 FSVDVLDEPESATRE-ELDPKKYGVIVT------HGRKKGLLLPNL 430
>PYR1_SQUAC (Q91437) CAD protein [Includes: Glutamine-dependent| carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2242 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Frame = +3 Query: 321 GFKDYALTSALRDRRFSPIQSKE----LPYLECTVSILTEYETALNYLDWEVGKHGLIIE 488 GF D + A++ + + ++ LP ++ ++ E+ NYL G ++ Sbjct: 875 GFSDKQIAMAIQSTELAVRRLRQEWKILPVVKQIDTVAAEWPAQTNYLYLTYNGEGHDLD 934 Query: 489 FTDPDYNVRRSGTYLPEVAAHEGWTQLEAIDSLMR 593 FT P V SG Y + W + I L + Sbjct: 935 FTKPHVMVIGSGVYRIGSSVEFDWCAVRCIQQLRK 969
>YCBK_SHIFL (P0AB09) Hypothetical protein ycbK| Length = 182 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 273 RLRGCIGTLEPRQIVSGFKDYALTSALRDR 362 RL+G +GT +P Q++SG++ + LR R Sbjct: 94 RLQGLLGTRKPVQLISGYRSIDTNNELRAR 123
>YCBK_ECOLI (P0AB06) Hypothetical protein ycbK| Length = 182 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 273 RLRGCIGTLEPRQIVSGFKDYALTSALRDR 362 RL+G +GT +P Q++SG++ + LR R Sbjct: 94 RLQGLLGTRKPVQLISGYRSIDTNNELRAR 123
>YCBK_ECOL6 (P0AB07) Hypothetical protein ycbK| Length = 182 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 273 RLRGCIGTLEPRQIVSGFKDYALTSALRDR 362 RL+G +GT +P Q++SG++ + LR R Sbjct: 94 RLQGLLGTRKPVQLISGYRSIDTNNELRAR 123
>YCBK_ECO57 (P0AB08) Hypothetical protein ycbK| Length = 182 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 273 RLRGCIGTLEPRQIVSGFKDYALTSALRDR 362 RL+G +GT +P Q++SG++ + LR R Sbjct: 94 RLQGLLGTRKPVQLISGYRSIDTNNELRAR 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,229,771 Number of Sequences: 219361 Number of extensions: 1401923 Number of successful extensions: 3898 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3865 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)