Clone Name | bart49d06 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197850.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0003O19.6), mRNA Length = 746 Score = 486 bits (245), Expect = e-134 Identities = 419/477 (87%) Strand = Plus / Plus Query: 122 gatggtggtggccacggaggaaatggcggtctactgcttcgacaccctcgtcgcccacta 181 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 92 gatggtggtggccacggaggaaatggcggtctactgcttcgacgccctcgtctcccacta 151 Query: 182 cagcggcgagcagccgccgccgcccgccttcgacgagggcgtccacccactgtttgtcac 241 ||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||||||| Sbjct: 152 cagcggcgaccagccgccgccgcccgccttcgaggagggcatccacccattgtttgtcac 211 Query: 242 ctggaagaaggctaccaatggttccgagccacgcctaaggggatgcatcggaactttgga 301 |||||||||||||||||||||||| || |||||||| | |||||||| ||||| ||||| Sbjct: 212 ctggaagaaggctaccaatggttcagaaccacgccttcgaggatgcattggaaccttgga 271 Query: 302 gccccgtcagattgtaagcggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 | | ||||||||||| | ||||||||||| || ||||| || ||||| ||||||| || Sbjct: 272 ggctcgtcagattgtcactggcttcaaggagtatgcgctcacaagtgcattgagggaccg 331 Query: 362 gcgcttttctccgatacagtccaaagagctgccgtatttggaatgcacggtttctatatt 421 |||||| |||| |||||||| ||||| |||||||||||||| || || || |||||| | Sbjct: 332 ccgctttcctcctatacagtcgaaagaactgccgtatttggagtgtacagtatctatact 391 Query: 422 gactgaatacgaaactgcactcaactaccttgattgggaggttggaaagcatggtttaat 481 ||| ||||| ||||||||||| ||| ||||||| |||||||| || |||||||| ||||| Sbjct: 392 gaccgaatatgaaactgcacttaaccaccttgactgggaggtgggtaagcatgggttaat 451 Query: 482 tattgagttcaccgatcctgactataatgtaagacggagtggaacatatttacctgaggt 541 |||||| ||||| ||||| |||||||| | || || |||| ||| |||||||||||||| Sbjct: 452 tattgaattcactgatccagactataacatgaggcgcagtgcaacttatttacctgaggt 511 Query: 542 tgctgcccatgaaggatggacacaactagaggctattgactcgctcatgaggaaggc 598 |||||||||||||||||||||||| |||||| | |||||||| || ||||||||||| Sbjct: 512 tgctgcccatgaaggatggacacatctagagaccattgactcactgatgaggaaggc 568
>dbj|AK069018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I03, full insert sequence Length = 1014 Score = 486 bits (245), Expect = e-134 Identities = 419/477 (87%) Strand = Plus / Plus Query: 122 gatggtggtggccacggaggaaatggcggtctactgcttcgacaccctcgtcgcccacta 181 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 94 gatggtggtggccacggaggaaatggcggtctactgcttcgacgccctcgtctcccacta 153 Query: 182 cagcggcgagcagccgccgccgcccgccttcgacgagggcgtccacccactgtttgtcac 241 ||||||||| ||||||||||||||||||||||| |||||| |||||||| |||||||||| Sbjct: 154 cagcggcgaccagccgccgccgcccgccttcgaggagggcatccacccattgtttgtcac 213 Query: 242 ctggaagaaggctaccaatggttccgagccacgcctaaggggatgcatcggaactttgga 301 |||||||||||||||||||||||| || |||||||| | |||||||| ||||| ||||| Sbjct: 214 ctggaagaaggctaccaatggttcagaaccacgccttcgaggatgcattggaaccttgga 273 Query: 302 gccccgtcagattgtaagcggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 | | ||||||||||| | ||||||||||| || ||||| || ||||| ||||||| || Sbjct: 274 ggctcgtcagattgtcactggcttcaaggagtatgcgctcacaagtgcattgagggaccg 333 Query: 362 gcgcttttctccgatacagtccaaagagctgccgtatttggaatgcacggtttctatatt 421 |||||| |||| |||||||| ||||| |||||||||||||| || || || |||||| | Sbjct: 334 ccgctttcctcctatacagtcgaaagaactgccgtatttggagtgtacagtatctatact 393 Query: 422 gactgaatacgaaactgcactcaactaccttgattgggaggttggaaagcatggtttaat 481 ||| ||||| ||||||||||| ||| ||||||| |||||||| || |||||||| ||||| Sbjct: 394 gaccgaatatgaaactgcacttaaccaccttgactgggaggtgggtaagcatgggttaat 453 Query: 482 tattgagttcaccgatcctgactataatgtaagacggagtggaacatatttacctgaggt 541 |||||| ||||| ||||| |||||||| | || || |||| ||| |||||||||||||| Sbjct: 454 tattgaattcactgatccagactataacatgaggcgcagtgcaacttatttacctgaggt 513 Query: 542 tgctgcccatgaaggatggacacaactagaggctattgactcgctcatgaggaaggc 598 |||||||||||||||||||||||| |||||| | |||||||| || ||||||||||| Sbjct: 514 tgctgcccatgaaggatggacacatctagagaccattgactcactgatgaggaaggc 570
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 168 bits (85), Expect = 1e-38 Identities = 100/105 (95%) Strand = Plus / Plus Query: 122 gatggtggtggccacggaggaaatggcggtctactgcttcgacaccctcgtcgcccacta 181 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 22234284 gatggtggtggccacggaggaaatggcggtctactgcttcgacgccctcgtctcccacta 22234343 Query: 182 cagcggcgagcagccgccgccgcccgccttcgacgagggcgtcca 226 ||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct: 22234344 cagcggcgaccagccgccgccgcccgccttcgaggagggcatcca 22234388 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 227 cccactgtttgtcacctggaagaaggctaccaatggttccgagccacgcctaaggggatg 286 |||| |||||||||||||||||||||||||||||||||| || |||||||| | ||||| Sbjct: 22235107 cccattgtttgtcacctggaagaaggctaccaatggttcagaaccacgccttcgaggatg 22235166 Query: 287 catcggaactttggagccccgtcagattgtaagcggcttcaaggattacgcgct 340 ||| ||||| |||||| | ||||||||||| | ||||||||||| || ||||| Sbjct: 22235167 cattggaaccttggaggctcgtcagattgtcactggcttcaaggagtatgcgct 22235220 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 352 tgagggatcggcgcttttctccgatacagtccaaagagctgccgtatttggaatgcacgg 411 ||||||| || |||||| |||| |||||||| ||||| |||||||||||||| || || | Sbjct: 22235406 tgagggaccgccgctttcctcctatacagtcgaaagaactgccgtatttggagtgtacag 22235465 Query: 412 tttctatattgactgaatacgaaactgcactcaactaccttgattgggaggt 463 | |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||| Sbjct: 22235466 tatctatactgaccgaatatgaaactgcacttaaccaccttgactgggaggt 22235517 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 468 aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 527 |||||||| ||||||||||| ||||| ||||| |||||||| | || || |||| ||| Sbjct: 22235588 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 22235647 Query: 528 tatttacctgaggttgctgcccatgaagg 556 ||||||||||||||||||||||||||||| Sbjct: 22235648 tatttacctgaggttgctgcccatgaagg 22235676 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 554 aggatggacacaactagaggctattgactcgctcatgaggaaggc 598 |||||||||||| |||||| | |||||||| || ||||||||||| Sbjct: 22236136 aggatggacacatctagagaccattgactcactgatgaggaaggc 22236180
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 168 bits (85), Expect = 1e-38 Identities = 100/105 (95%) Strand = Plus / Plus Query: 122 gatggtggtggccacggaggaaatggcggtctactgcttcgacaccctcgtcgcccacta 181 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 51527 gatggtggtggccacggaggaaatggcggtctactgcttcgacgccctcgtctcccacta 51586 Query: 182 cagcggcgagcagccgccgccgcccgccttcgacgagggcgtcca 226 ||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct: 51587 cagcggcgaccagccgccgccgcccgccttcgaggagggcatcca 51631 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 227 cccactgtttgtcacctggaagaaggctaccaatggttccgagccacgcctaaggggatg 286 |||| |||||||||||||||||||||||||||||||||| || |||||||| | ||||| Sbjct: 52350 cccattgtttgtcacctggaagaaggctaccaatggttcagaaccacgccttcgaggatg 52409 Query: 287 catcggaactttggagccccgtcagattgtaagcggcttcaaggattacgcgct 340 ||| ||||| |||||| | ||||||||||| | ||||||||||| || ||||| Sbjct: 52410 cattggaaccttggaggctcgtcagattgtcactggcttcaaggagtatgcgct 52463 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 352 tgagggatcggcgcttttctccgatacagtccaaagagctgccgtatttggaatgcacgg 411 ||||||| || |||||| |||| |||||||| ||||| |||||||||||||| || || | Sbjct: 52649 tgagggaccgccgctttcctcctatacagtcgaaagaactgccgtatttggagtgtacag 52708 Query: 412 tttctatattgactgaatacgaaactgcactcaactaccttgattgggaggt 463 | |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||| Sbjct: 52709 tatctatactgaccgaatatgaaactgcacttaaccaccttgactgggaggt 52760 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 468 aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 527 |||||||| ||||||||||| ||||| ||||| |||||||| | || || |||| ||| Sbjct: 52831 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 52890 Query: 528 tatttacctgaggttgctgcccatgaagg 556 ||||||||||||||||||||||||||||| Sbjct: 52891 tatttacctgaggttgctgcccatgaagg 52919 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 554 aggatggacacaactagaggctattgactcgctcatgaggaaggc 598 |||||||||||| |||||| | |||||||| || ||||||||||| Sbjct: 53379 aggatggacacatctagagaccattgactcactgatgaggaaggc 53423
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 168 bits (85), Expect = 1e-38 Identities = 100/105 (95%) Strand = Plus / Plus Query: 122 gatggtggtggccacggaggaaatggcggtctactgcttcgacaccctcgtcgcccacta 181 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 22246352 gatggtggtggccacggaggaaatggcggtctactgcttcgacgccctcgtctcccacta 22246411 Query: 182 cagcggcgagcagccgccgccgcccgccttcgacgagggcgtcca 226 ||||||||| ||||||||||||||||||||||| |||||| |||| Sbjct: 22246412 cagcggcgaccagccgccgccgcccgccttcgaggagggcatcca 22246456 Score = 107 bits (54), Expect = 4e-20 Identities = 99/114 (86%) Strand = Plus / Plus Query: 227 cccactgtttgtcacctggaagaaggctaccaatggttccgagccacgcctaaggggatg 286 |||| |||||||||||||||||||||||||||||||||| || |||||||| | ||||| Sbjct: 22247175 cccattgtttgtcacctggaagaaggctaccaatggttcagaaccacgccttcgaggatg 22247234 Query: 287 catcggaactttggagccccgtcagattgtaagcggcttcaaggattacgcgct 340 ||| ||||| |||||| | ||||||||||| | ||||||||||| || ||||| Sbjct: 22247235 cattggaaccttggaggctcgtcagattgtcactggcttcaaggagtatgcgct 22247288 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 352 tgagggatcggcgcttttctccgatacagtccaaagagctgccgtatttggaatgcacgg 411 ||||||| || |||||| |||| |||||||| ||||| |||||||||||||| || || | Sbjct: 22247474 tgagggaccgccgctttcctcctatacagtcgaaagaactgccgtatttggagtgtacag 22247533 Query: 412 tttctatattgactgaatacgaaactgcactcaactaccttgattgggaggt 463 | |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||| Sbjct: 22247534 tatctatactgaccgaatatgaaactgcacttaaccaccttgactgggaggt 22247585 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 468 aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 527 |||||||| ||||||||||| ||||| ||||| |||||||| | || || |||| ||| Sbjct: 22247656 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 22247715 Query: 528 tatttacctgaggttgctgcccatgaagg 556 ||||||||||||||||||||||||||||| Sbjct: 22247716 tatttacctgaggttgctgcccatgaagg 22247744 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 554 aggatggacacaactagaggctattgactcgctcatgaggaaggc 598 |||||||||||| |||||| | |||||||| || ||||||||||| Sbjct: 22248204 aggatggacacatctagagaccattgactcactgatgaggaaggc 22248248
>emb|AJ271959.1|TCA271959 Theobroma cacao microsatellite DNA, clone mTcCIR61 Length = 456 Score = 69.9 bits (35), Expect = 9e-09 Identities = 82/97 (84%), Gaps = 3/97 (3%) Strand = Plus / Minus Query: 460 aggttggaaagcatggtttaattattgagttcaccgatcctgactataatgtaagacgga 519 ||||||||||||| ||| ||||||||||||| || ||| ||||||||| |||| || | Sbjct: 314 aggttggaaagcaaggtataattattgagtttactgat---gactataatataaggcgaa 258 Query: 520 gtggaacatatttacctgaggttgctgcccatgaagg 556 ||| ||||||||||||||||| |||| |||||||| Sbjct: 257 gtgccacatatttacctgaggtgcctgcacatgaagg 221
>ref|NM_001036432.1| Arabidopsis thaliana unknown protein AT2G38710 transcript variant AT2G38710.2 mRNA, complete cds Length = 1164 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 696 taccttgattgggaggttggtaagcatggtataatcattgagtt 739 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 570 ggcttcaaggattatgccttgacaagtgccttgagggatcg 610
>ref|NM_129428.3| Arabidopsis thaliana unknown protein AT2G38710 transcript variant AT2G38710.1 mRNA, complete cds Length = 907 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 439 taccttgattgggaggttggtaagcatggtataatcattgagtt 482 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 313 ggcttcaaggattatgccttgacaagtgccttgagggatcg 353
>gb|BT000577.1| Arabidopsis thaliana unknown protein (At2g38710/T6A23.9) mRNA, complete cds Length = 645 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 325 taccttgattgggaggttggtaagcatggtataatcattgagtt 368 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 199 ggcttcaaggattatgccttgacaagtgccttgagggatcg 239
>gb|AY127005.1| Arabidopsis thaliana At2g38710/T6A23.9 mRNA, complete cds Length = 877 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 413 taccttgattgggaggttggtaagcatggtataatcattgagtt 456 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 287 ggcttcaaggattatgccttgacaagtgccttgagggatcg 327
>emb|BX821552.1|CNS0A94O Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZF04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 882 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 417 taccttgattgggaggttggtaagcatggtataatcattgagtt 460 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 291 ggcttcaaggattatgccttgacaagtgccttgagggatcg 331
>emb|BX821334.1|CNS0A98K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL34ZE10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 856 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 388 taccttgattgggaggttggtaagcatggtataatcattgagtt 431 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 262 ggcttcaaggattatgccttgacaagtgccttgagggatcg 302
>gb|AY085766.1| Arabidopsis thaliana clone 17861 mRNA, complete sequence Length = 904 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 447 taccttgattgggaggttggaaagcatggtttaattattgagtt 490 |||||||||||||||||||| ||||||||| |||| |||||||| Sbjct: 439 taccttgattgggaggttggtaagcatggtataatcattgagtt 482 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 321 ggcttcaaggattacgcgctgaccagtgccctgagggatcg 361 |||||||||||||| || |||| |||||| |||||||||| Sbjct: 313 ggcttcaaggattatgccttgacaagtgccttgagggatcg 353
>gb|BT013871.1| Lycopersicon esculentum clone 132851R, mRNA sequence Length = 1227 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 444 aactaccttgattgggaggttggaaagcatggtttaattattgagttcaccgatcctgac 503 |||||||||||||||||||| || |||||||| |||||||||| || || || ||| || Sbjct: 606 aactaccttgattgggaggtagggaagcatgggataattattgaatttactgaccctaac 665 Query: 504 tataa 508 ||||| Sbjct: 666 tataa 670
>ref|XM_480995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 ccgcagcggcggccgcctcggc 93 |||||||||||||||||||||| Sbjct: 408 ccgcagcggcggccgcctcggc 429
>gb|AY020156.1| Oryza sativa microsatellite MRG2481 containing (CT)X22, genomic sequence Length = 244 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 72 ccgcagcggcggccgcctcggc 93 |||||||||||||||||||||| Sbjct: 23 ccgcagcggcggccgcctcggc 44
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 taccctccccacccccaccgcc 64 |||||||||||||||||||||| Sbjct: 124246 taccctccccacccccaccgcc 124267
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 ccgcagcggcggccgcctcggc 93 |||||||||||||||||||||| Sbjct: 9129995 ccgcagcggcggccgcctcggc 9129974 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 15417293 gccgctccgtccgcagcggc 15417312
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 gcggcgagcagccgccgccgcc 205 |||||||||||||||||||||| Sbjct: 23707155 gcggcgagcagccgccgccgcc 23707176
>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03 Length = 157905 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 ccgcagcggcggccgcctcggc 93 |||||||||||||||||||||| Sbjct: 140305 ccgcagcggcggccgcctcggc 140284
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 gcggcgagcagccgccgccgcc 205 |||||||||||||||||||||| Sbjct: 55231 gcggcgagcagccgccgccgcc 55252
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 72 ccgcagcggcggccgcctcggc 93 |||||||||||||||||||||| Sbjct: 65489 ccgcagcggcggccgcctcggc 65468
>gb|BC016181.1| Homo sapiens hypothetical protein MGC4268, mRNA (cDNA clone MGC:20482 IMAGE:4644159), complete cds Length = 4732 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 945 acatatttacctgaggttgct 965
>gb|BC078174.1| Homo sapiens hypothetical protein MGC4268, mRNA (cDNA clone MGC:88063 IMAGE:6012672), complete cds Length = 4676 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 955 acatatttacctgaggttgct 975
>gb|DQ479924.1| Mus musculus strain BTBR T+ tf/J MAX interacting protein 1 (Mxi1) gene, complete cds Length = 4063 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 cctccccacccccaccgccgc 66 ||||||||||||||||||||| Sbjct: 589 cctccccacccccaccgccgc 569
>ref|NM_153515.2| Mus musculus RIKEN cDNA E230022H04 gene (E230022H04Rik), mRNA Length = 3391 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1158 acatatttacctgaggttgct 1178
>gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome 19, complete sequence Length = 208557 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 caccgatcctgactataatgt 511 ||||||||||||||||||||| Sbjct: 27767 caccgatcctgactataatgt 27787
>gb|AC165168.3| Mus musculus BAC clone RP23-12D3 from chromosome 19, complete sequence Length = 215151 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 491 caccgatcctgactataatgt 511 ||||||||||||||||||||| Sbjct: 156382 caccgatcctgactataatgt 156402
>gb|AC133451.14| Mus musculus chromosome 19, clone RP24-91H12, complete sequence Length = 184265 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 cctccccacccccaccgccgc 66 ||||||||||||||||||||| Sbjct: 86469 cctccccacccccaccgccgc 86449
>gb|BC034661.1| Mus musculus RIKEN cDNA E230022H04 gene, mRNA (cDNA clone MGC:32132 IMAGE:5137474), complete cds Length = 3181 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 955 acatatttacctgaggttgct 975
>ref|XM_543287.2| PREDICTED: Canis familiaris similar to Endothelin-converting enzyme-like 1 (Xce protein) (LOC486161), mRNA Length = 2343 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 gagcagccgccgccgcccgcc 209 ||||||||||||||||||||| Sbjct: 287 gagcagccgccgccgcccgcc 267
>ref|XM_852694.1| PREDICTED: Canis familiaris similar to CG5902-PA, isoform A, transcript variant 4 (LOC483862), mRNA Length = 912 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 673 acatatttacctgaggttgct 693
>ref|XM_540982.2| PREDICTED: Canis familiaris similar to CG5902-PA, isoform A, transcript variant 1 (LOC483862), mRNA Length = 1309 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 784 acatatttacctgaggttgct 804
>ref|XM_843911.1| PREDICTED: Canis familiaris similar to CG5902-PA, isoform A, transcript variant 2 (LOC483862), mRNA Length = 1458 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 933 acatatttacctgaggttgct 953
>gb|AC124393.5| Mus musculus BAC clone RP24-331E1 from chromosome 18, complete sequence Length = 171769 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 103928 acatatttacctgaggttgct 103948
>gb|BC012310.1| Mus musculus RIKEN cDNA E230022H04 gene, mRNA (cDNA clone IMAGE:3500900), with apparent retained intron Length = 3174 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 819 acatatttacctgaggttgct 839
>gb|AC121605.3| Mus musculus BAC clone RP23-312E16 from 1, complete sequence Length = 196494 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 172992 acatatttacctgaggttgct 173012
>gb|AC161511.3| Mus musculus chromosome 18, clone RP23-37O16, complete sequence Length = 186860 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 51961 acatatttacctgaggttgct 51941
>gb|AC159096.2| Mus musculus chromosome 1, clone RP24-95N15, complete sequence Length = 189668 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 5687 acatatttacctgaggttgct 5667
>emb|CR857850.1| Pongo pygmaeus mRNA; cDNA DKFZp468L1210 (from clone DKFZp468L1210) Length = 3482 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 938 acatatttacctgaggttgct 958
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ccgccttcgacgagggcgtcc 225 ||||||||||||||||||||| Sbjct: 717857 ccgccttcgacgagggcgtcc 717877
>gb|BC056948.1| Mus musculus RIKEN cDNA E230022H04 gene, mRNA (cDNA clone MGC:66664 IMAGE:6827318), complete cds Length = 3391 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1158 acatatttacctgaggttgct 1178
>ref|NM_031445.2| Homo sapiens hypothetical protein MGC4268 (MGC4268), mRNA Length = 4698 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 945 acatatttacctgaggttgct 965
>dbj|AK095871.1| Homo sapiens cDNA FLJ38552 fis, clone HCHON2002241 Length = 2307 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 30 acatatttacctgaggttgct 50
>dbj|AK133018.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930554M16 product:weakly similar to AMME syndrome candidate gene 1 protein [Homo sapiens], full insert sequence Length = 2765 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1416 acatatttacctgaggttgct 1436
>dbj|AK151060.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830022F14 product:hypothetical protein, full insert sequence Length = 3432 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1222 acatatttacctgaggttgct 1242
>dbj|AK151257.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830027F03 product:weakly similar to AMME syndrome candidate gene 1 protein [Homo sapiens], full insert sequence Length = 3333 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1122 acatatttacctgaggttgct 1142
>dbj|AK054131.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230022H04 product:weakly similar to AMMECR1 PROTEIN [Homo sapiens], full insert sequence Length = 2690 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1213 acatatttacctgaggttgct 1233
>dbj|AK030009.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932415E21 product:weakly similar to AMMECR1 PROTEIN [Homo sapiens], full insert sequence Length = 2899 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1422 acatatttacctgaggttgct 1442
>ref|XM_396953.2| PREDICTED: Apis mellifera similar to ENSANGP00000008479 (LOC413510), mRNA Length = 3279 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ccccacccccaccgccgctcc 69 ||||||||||||||||||||| Sbjct: 2248 ccccacccccaccgccgctcc 2228
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcgacgagggcg 222 |||||||||||||||| ||||||||||| Sbjct: 14399327 gccgccgccgcccgccggcgacgagggcg 14399355
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 tccccacccccaccgccgctc 68 ||||||||||||||||||||| Sbjct: 2910563 tccccacccccaccgccgctc 2910543 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcggcgagcagccgccgccg 203 |||||||||||||||||||| Sbjct: 16208310 gcggcgagcagccgccgccg 16208329
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 ccccaccgccgctccgtccgc 75 ||||||||||||||||||||| Sbjct: 42552934 ccccaccgccgctccgtccgc 42552914 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 gagcagccgccgccgcccgcc 209 ||||||||||||||||||||| Sbjct: 9116398 gagcagccgccgccgcccgcc 9116378 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tgtttgtcacctggaagaag 251 |||||||||||||||||||| Sbjct: 36228724 tgtttgtcacctggaagaag 36228743 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 acagcggcgagcagccgccgccgc 204 ||||| |||||||||||||||||| Sbjct: 27050035 acagcagcgagcagccgccgccgc 27050058 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 6880847 agcagccgccgccgcccgcc 6880828
>gb|AC012306.11| Homo sapiens BAC clone RP11-395A13 from 2, complete sequence Length = 153617 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 18684 acatatttacctgaggttgct 18664
>gb|AC027341.3|AC027341 Homo sapiens chromosome 5 clone CTD-2261B13, complete sequence Length = 106920 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 gaggttggaaagcatggttta 479 ||||||||||||||||||||| Sbjct: 67192 gaggttggaaagcatggttta 67172
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 ccccaccgccgctccgtccgc 75 ||||||||||||||||||||| Sbjct: 73817 ccccaccgccgctccgtccgc 73797
>ref|XM_240915.3| PREDICTED: Rattus norvegicus similar to hypothetical protein MGC32132 (predicted) (LOC307526), mRNA Length = 3625 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 1408 acatatttacctgaggttgct 1428
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 gagcagccgccgccgcccgcc 209 ||||||||||||||||||||| Sbjct: 145405 gagcagccgccgccgcccgcc 145385
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 gagcagccgccgccgcccgcc 209 ||||||||||||||||||||| Sbjct: 16780 gagcagccgccgccgcccgcc 16760
>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0465E03 Length = 151206 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcgacgagggcg 222 |||||||||||||||| ||||||||||| Sbjct: 91130 gccgccgccgcccgccggcgacgagggcg 91158
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 48 tccccacccccaccgccgctc 68 ||||||||||||||||||||| Sbjct: 80850 tccccacccccaccgccgctc 80830
>dbj|AK101084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I08, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 gagcagccgccgccgcccgcc 209 ||||||||||||||||||||| Sbjct: 29 gagcagccgccgccgcccgcc 49
>gb|AC101703.11| Mus musculus chromosome 1, clone RP23-248B15, complete sequence Length = 208984 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 525 acatatttacctgaggttgct 545 ||||||||||||||||||||| Sbjct: 2684 acatatttacctgaggttgct 2704
>gb|AC132939.23| Mus musculus chromosome 5, clone RP24-91I11, complete sequence Length = 224918 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 ccctccccacccccaccgccgctcc 69 ||||||||||||||||| ||||||| Sbjct: 175913 ccctccccacccccacccccgctcc 175937
>emb|AL627244.1|HS160J21 Homo sapiens chromosome X sequence from BAC CEPHB160J21 , map Xp21.1 region DXS709-SRPX, complete sequence Length = 150966 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ttgggaggttggaaagcatgg 475 ||||||||||||||||||||| Sbjct: 2513 ttgggaggttggaaagcatgg 2533
>emb|AJ239329.2|HSXKSRPX Homo sapiens chromosome X sequence from 4 cosmids, map Xp21.1 region DXS709-SRPX, complete sequence Length = 106604 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 455 ttgggaggttggaaagcatgg 475 ||||||||||||||||||||| Sbjct: 37344 ttgggaggttggaaagcatgg 37364
>gb|AC155249.2| Mus musculus BAC clone RP24-254A5 from chromosome 9, complete sequence Length = 191932 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 taccctccccacccccaccgccgc 66 ||||||||||||||||||| |||| Sbjct: 11226 taccctccccacccccacccccgc 11249
>ref|NM_188543.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 969 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 122 agcagccgccgccgcccgcc 141
>ref|NM_192498.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 729 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 acagcggcgagcagccgccgccgc 204 ||||| |||||||||||||||||| Sbjct: 73 acagcagcgagcagccgccgccgc 50
>ref|XM_477990.1| Oryza sativa (japonica cultivar-group), mRNA Length = 993 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcggcgagcagccgccgccg 203 |||||||||||||||||||| Sbjct: 313 gcggcgagcagccgccgccg 332
>gb|AF092021.1| Drosophila melanogaster microsatellite DM95 Length = 220 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 accctccccacccccaccgc 63 |||||||||||||||||||| Sbjct: 55 accctccccacccccaccgc 74
>gb|AF092015.1| Drosophila melanogaster microsatellite DM86 Length = 253 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 accctccccacccccaccgc 63 |||||||||||||||||||| Sbjct: 39 accctccccacccccaccgc 58
>gb|AF092001.1| Drosophila melanogaster microsatellite DM38 Length = 220 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 accctccccacccccaccgc 63 |||||||||||||||||||| Sbjct: 55 accctccccacccccaccgc 74
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 116335 gccgctccgtccgcagcggc 116354
>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence Length = 176889 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 88900 agcagccgccgccgcccgcc 88919
>gb|AC074359.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-289J24, complete sequence Length = 106041 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cctccccacccccaccgccgctcc 69 |||||||||||||||| ||||||| Sbjct: 11085 cctccccacccccacccccgctcc 11108
>gb|AC024607.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-240H6, complete sequence Length = 197273 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cctccccacccccaccgccgctcc 69 |||||||||||||||| ||||||| Sbjct: 195382 cctccccacccccacccccgctcc 195405
>gb|AC079255.5| Homo sapiens BAC clone RP11-264P5 from 7, complete sequence Length = 27692 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 taccctccccacccccaccg 62 |||||||||||||||||||| Sbjct: 19089 taccctccccacccccaccg 19108
>gb|AC107783.10| Mus musculus chromosome 1, clone RP23-38G5, complete sequence Length = 178062 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gtaccctccccacccccacc 61 |||||||||||||||||||| Sbjct: 120682 gtaccctccccacccccacc 120663
>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence Length = 286283 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 285598 agcagccgccgccgcccgcc 285579
>emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262P20 on chromosome 4, complete sequence Length = 193444 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccctccccacccccaccgcc 64 |||||||||||||||||||| Sbjct: 119610 ccctccccacccccaccgcc 119591
>emb|AL031667.21|HS620E11 Human DNA sequence from clone RP4-620E11 on chromosome 20q11.2-12 Contains the 3' end of the LPIN3 gene for lipin 3, the C20orf130 gene, a novel pseudogene, the 3' end of the CHD6 gene for chromodomain helicase DNA binding protein 6, a lymphocyte antigen 6 complex locus H (LY6H) pseudogene and a CpG island, complete sequence Length = 142520 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gtaccctccccacccccacc 61 |||||||||||||||||||| Sbjct: 50609 gtaccctccccacccccacc 50590
>emb|Z86099.2|HSV2HG52 Herpes simplex virus type 2 (strain HG52), complete genome Length = 154746 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 154663 gccgccgccgcccgccttcg 154682 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 127079 gccgccgccgcccgccttcg 127060 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 171 gccgccgccgcccgccttcg 190
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gcggcgagcagccgccgccg 203 |||||||||||||||||||| Sbjct: 276656 gcggcgagcagccgccgccg 276637
>gb|AC023723.4| Drosophila melanogaster X BAC RP98-48E6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179363 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 accctccccacccccaccgc 63 |||||||||||||||||||| Sbjct: 70238 accctccccacccccaccgc 70219
>gb|AC107072.3| Homo sapiens BAC clone RP11-359D14 from 4, complete sequence Length = 152824 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 ccctccccacccccaccgcc 64 |||||||||||||||||||| Sbjct: 27722 ccctccccacccccaccgcc 27741
>gb|AY118445.1| Drosophila melanogaster SD10002 full insert cDNA Length = 1950 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 841 acccactctttgtcacctggaaga 864
>ref|NM_170106.2| Drosophila melanogaster CG5902-RB, transcript variant B (CG5902), mRNA Length = 1736 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 646 acccactctttgtcacctggaaga 669
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 99289 gccgctccgtccgcagcggc 99270
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 4662077 gccgccgccgcccgccttcg 4662096 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 2617563 gccgccgccgcccgccttcg 2617544 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 2602949 gccgccgccgcccgccttcg 2602968
>ref|NM_142944.2| Drosophila melanogaster CG5902-RA, transcript variant A (CG5902), mRNA Length = 1934 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 844 acccactctttgtcacctggaaga 867
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 accgctcgcttccgcctctcccca 28 |||||||||| ||||||||||||| Sbjct: 14668582 accgctcgctgccgcctctcccca 14668605 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcggctgaacccctctcggc 108 |||||||||||||||||||| Sbjct: 12150350 tcggctgaacccctctcggc 12150369
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 6444941 gccgctccgtccgcagcggc 6444960
>gb|AC007929.8|AC007929 Drosophila melanogaster, chromosome 3R, region 95A-95C, BAC clone BACR05C11, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 153091 acccactctttgtcacctggaaga 153114
>gb|AC008202.4|AC008202 Drosophila melanogaster, chromosome 3R, region 95C-95D, BAC clone BACR15J11, complete sequence Length = 186159 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 56095 acccactctttgtcacctggaaga 56118
>gb|AC154307.2| Mus musculus BAC clone RP23-377C12 from chromosome 9, complete sequence Length = 186985 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 taccctccccacccccaccgccgc 66 ||||||||||||||||||| |||| Sbjct: 179853 taccctccccacccccacccccgc 179876
>gb|AC153613.9| Mus musculus 10 BAC RP23-23C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214432 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gtaccctccccacccccacc 61 |||||||||||||||||||| Sbjct: 191840 gtaccctccccacccccacc 191859
>gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence Length = 207596 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gtaccctccccacccccacc 61 |||||||||||||||||||| Sbjct: 112961 gtaccctccccacccccacc 112980
>dbj|AP003240.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406G08 Length = 144233 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tgtttgtcacctggaagaag 251 |||||||||||||||||||| Sbjct: 105737 tgtttgtcacctggaagaag 105756
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 48571 agcagccgccgccgcccgcc 48552
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 agcagccgccgccgcccgcc 209 |||||||||||||||||||| Sbjct: 2665 agcagccgccgccgcccgcc 2646
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 acagcggcgagcagccgccgccgc 204 ||||| |||||||||||||||||| Sbjct: 108866 acagcagcgagcagccgccgccgc 108889
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gccgccgcccgccttcgacg 216 |||||||||||||||||||| Sbjct: 1640154 gccgccgcccgccttcgacg 1640173
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gcgatcgacgatggtggtgg 132 |||||||||||||||||||| Sbjct: 4903012 gcgatcgacgatggtggtgg 4902993
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gatggtggtggccacggagg 141 |||||||||||||||||||| Sbjct: 357855 gatggtggtggccacggagg 357836
>gb|AE005049.1| Halobacterium sp. NRC-1 section 80 of 170 of the complete genome Length = 10681 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 accgccgctccgtccgcagcggcg 82 ||||||||||||||||| |||||| Sbjct: 4172 accgccgctccgtccgcggcggcg 4195
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02 Length = 162928 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 102869 gccgctccgtccgcagcggc 102888
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gcggcgagcagccgccgccg 203 |||||||||||||||||||| Sbjct: 28748 gcggcgagcagccgccgccg 28767
>emb|AL671532.13| Human DNA sequence from clone RP11-512A4 on chromosome 22, complete sequence Length = 211173 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccctccccacccccaccgcc 64 |||||||||||||||||||| Sbjct: 135463 ccctccccacccccaccgcc 135444
>gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83 of 118 of the complete sequence Length = 230236 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 acccactgtttgtcacctggaaga 249 ||||||| |||||||||||||||| Sbjct: 185983 acccactctttgtcacctggaaga 186006
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 accctccccacccccaccgc 63 |||||||||||||||||||| Sbjct: 74461 accctccccacccccaccgc 74480
>dbj|AP005854.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1063B1, complete sequence Length = 55116 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 gagcagccgccgccgcccgc 208 |||||||||||||||||||| Sbjct: 24170 gagcagccgccgccgcccgc 24151
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 gccgctccgtccgcagcggc 81 |||||||||||||||||||| Sbjct: 6511408 gccgctccgtccgcagcggc 6511427
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 accgctcgcttccgcctctcccca 28 |||||||||| ||||||||||||| Sbjct: 14622865 accgctcgctgccgcctctcccca 14622888 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcggctgaacccctctcggc 108 |||||||||||||||||||| Sbjct: 12104720 tcggctgaacccctctcggc 12104739
>emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa0057C04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131673 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 accgctcgcttccgcctctcccca 28 |||||||||| ||||||||||||| Sbjct: 75503 accgctcgctgccgcctctcccca 75480
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tcggctgaacccctctcggc 108 |||||||||||||||||||| Sbjct: 146967 tcggctgaacccctctcggc 146948
>emb|Z68164.1|HSL19H1 Human DNA sequence from clone LA04NC01-19H1 on chromosome 4, complete sequence Length = 40145 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ccctccccacccccaccgcc 64 |||||||||||||||||||| Sbjct: 24494 ccctccccacccccaccgcc 24475
>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete sequence Length = 201673 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gtaccctccccacccccacc 61 |||||||||||||||||||| Sbjct: 142544 gtaccctccccacccccacc 142525
>gb|K01838.1|HS2LS52 HSV-2 (strain HG52) L-S inversion region Length = 348 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 146 gccgccgccgcccgccttcg 127
>dbj|D10471.1|HS2ULIR Herpes simplex virus type 2 genomic DNA for 0.74-0.84 region, complete cds Length = 13680 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 gccgccgccgcccgccttcg 213 |||||||||||||||||||| Sbjct: 13448 gccgccgccgcccgccttcg 13429
>emb|AL772406.4| Mouse DNA sequence from clone RP23-321K16 on chromosome 4, complete sequence Length = 151744 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 47 ctccccacccccaccgccgctccgtccg 74 ||||||||||||||| |||||| ||||| Sbjct: 127278 ctccccacccccacccccgctcagtccg 127251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,029,488 Number of Sequences: 3902068 Number of extensions: 5029488 Number of successful extensions: 125601 Number of sequences better than 10.0: 121 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123275 Number of HSP's gapped (non-prelim): 2325 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)