ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart49d05 |
|---|---|
| Clone Library Name | barley_pub |
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 61.6 bits (148), Expect(2) = 1e-18 Identities = 26/51 (50%), Positives = 36/51 (70%) Frame = +3 Query: 408 VWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLY 560 VW+FD+DET LSNLPYY+ H +G F+ F+ +V G+APAL + +LY Sbjct: 105 VWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLY 155 Score = 50.8 bits (120), Expect(2) = 1e-18 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = +2 Query: 221 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLTGNG 400 C +W VE +N+ WKT+P C YV YM+G ++ + V D+A Y S+ L +G Sbjct: 43 CTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDG 102 Query: 401 K 403 + Sbjct: 103 R 103
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 53.9 bits (128), Expect(2) = 5e-16 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Frame = +3 Query: 408 VWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLY 560 VW+FD+D+T LS++PYYAK+G+G ++ +++ G S P LPET LY Sbjct: 120 VWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLY 171 Score = 49.7 bits (117), Expect(2) = 5e-16 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = +2 Query: 221 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKL 388 C SW LGVE N+ ++ TVPA+C+ YV Y++ S ++ DSK V +A Y L L Sbjct: 57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLAL 113
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 64.7 bits (156), Expect = 2e-10 Identities = 28/50 (56%), Positives = 38/50 (76%) Frame = +3 Query: 411 WVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLY 560 +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + Y Sbjct: 100 FVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNY 149 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Frame = +2 Query: 215 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLTG 394 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 37 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 94 Query: 395 NGKAGLGLRHRRDHXXXXXXXXXXXXXGYTVQRDQ-LQRIRAT------GERASPAGDEA 553 H +D Y + +++ +T + +PA E Sbjct: 95 ---------HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 145 Query: 554 A--VHKLRSIGVKPVFLTGRTEDQ 619 +KL S+G K +FL+GRT D+ Sbjct: 146 LKNYNKLVSLGFKIIFLSGRTLDK 169
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 64.7 bits (156), Expect = 2e-10 Identities = 27/51 (52%), Positives = 37/51 (72%) Frame = +3 Query: 408 VWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLY 560 +++F ID T LSN+PYY KHG+G FN T ++ +V +G APALPET + Y Sbjct: 103 IFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNY 153 Score = 56.6 bits (135), Expect = 6e-08 Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 4/151 (2%) Frame = +2 Query: 179 LRPLLGSGKHAG-VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVID 355 LR G G+ + V C S+ L VEAHN+R +KT+P C Y+ G FR DSK V Sbjct: 28 LRMKTGYGERSSEVKCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQ 87 Query: 356 QALAYVDSLKLTGNGKAGLGLRHRRDHXXXXXXXXXXXXXGYTVQR-DQLQRIRATGERA 532 QA Y ++ N G+ + GY V+ ++ + Sbjct: 88 QAFFYASEREVHHNDIFIFGIDN-----TVLSNIPYYEKHGYGVEEFNETLYDEWVNKGD 142 Query: 533 SPAGDEAA--VHKLRSIGVKPVFLTGRTEDQ 619 +PA E +KL S+G K VFL+GR D+ Sbjct: 143 APALPETLKNYNKLLSLGFKIVFLSGRYLDK 173
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 64.7 bits (156), Expect = 2e-10 Identities = 28/50 (56%), Positives = 38/50 (76%) Frame = +3 Query: 411 WVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQGSAPALPETKRLY 560 +VF ID T LSN+PYY KHG+G FN+T ++ +V +G+APALPET + Y Sbjct: 103 FVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNY 152 Score = 54.7 bits (130), Expect = 2e-07 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 9/144 (6%) Frame = +2 Query: 215 VACDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKLTG 394 V C SW L VEAHN+ ++T+P C Y+ G +R DSK V QA Y L++ Sbjct: 40 VKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV-- 97 Query: 395 NGKAGLGLRHRRDHXXXXXXXXXXXXXGYTVQRDQ-LQRIRAT------GERASPAGDEA 553 H +D Y + +++ +T + +PA E Sbjct: 98 ---------HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPET 148 Query: 554 A--VHKLRSIGVKPVFLTGRTEDQ 619 +KL S+G K +FL+GRT D+ Sbjct: 149 LKNYNKLVSLGFKIIFLSGRTLDK 172
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 53.1 bits (126), Expect = 6e-07 Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Frame = +2 Query: 221 CDSWVLGVEAHNVRDWKTVPASCEGYVGHYMLGS-HFRRDSKVVIDQALAYVDSLKLTGN 397 C SW LGVE N+ D+ TVPA+C+ YV Y++ S ++ DSK V +A Y L L N Sbjct: 52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALK-N 110 Query: 398 GKAGLGLRHRRDHXXXXXXXXXXXXXGYTVQRDQLQRIRATGERASPAGDEAAVHKLRSI 577 + + D G T + D G AS G A+H ++I Sbjct: 111 DTVNVWIFDLDDTLLSSIPYYAKYGYG-TEKTDPGAYWLWLGTGASTPGLPEALHLYQNI 169 Query: 578 ---GVKPVFLTGR 607 G++P+ L+ R Sbjct: 170 IELGIEPIILSDR 182 Score = 52.0 bits (123), Expect = 1e-06 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Frame = +3 Query: 408 VWVFDIDETTLSNLPYYAKHGFGATPFNATSFNAYVLQG-SAPALPETKRLY 560 VW+FD+D+T LS++PYYAK+G+G + ++ ++ G S P LPE LY Sbjct: 115 VWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLY 166
>CYF_PSINU (Q8WI07) Apocytochrome f precursor| Length = 321 Score = 33.9 bits (76), Expect = 0.39 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = +2 Query: 110 VNIRMPTSAAD--VDEAVVA-PLIHALRPLLGSGKHAGVACDSWVLGVEAHNVRDWKTVP 280 V+I +P S V EAVV P ++ +LG+GK G+ + ++ E + + +P Sbjct: 66 VDIEVPQSVFPNTVFEAVVKIPYDKQIKQVLGNGKKGGINVGAVLILPEGFELAPYNRIP 125 Query: 281 ASCEGYVGHYMLGSHFRRDSKVVI 352 A + +G L ++R D + +I Sbjct: 126 AEMKDKIGDLALFQNYRPDKRNII 149
>MMPL8_MYCTU (O07800) Putative membrane protein mmpL8| Length = 1089 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/50 (36%), Positives = 26/50 (52%) Frame = +2 Query: 239 GVEAHNVRDWKTVPASCEGYVGHYMLGSHFRRDSKVVIDQALAYVDSLKL 388 G+ +N D KT+PAS E +G+ L HF S ++I + L S L Sbjct: 418 GLARYNYDDRKTLPASVESSIGYAALDKHF--PSNLIIPEYLFIQSSTDL 465
>RPOB_GRATL (Q6B8R8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1120 Score = 30.0 bits (66), Expect = 5.7 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Frame = +2 Query: 164 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN-----VRDWKTVPASCEGYVGHYMLGSHF 328 PL+ + ++G+G A +A DS + + N V K + EGY HY L ++ Sbjct: 591 PLLFPEKSIVGTGLEAKIAKDSGMTIISRTNGTVSYVSGTKIGIQNKEGYTIHYRLKKYY 650 Query: 329 RRDSKVVIDQ 358 R + I+Q Sbjct: 651 RSNQDTCINQ 660
>RPOB_CYACA (Q9TM35) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1081 Score = 29.3 bits (64), Expect = 9.7 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 164 PLIHALRPLLGSGKHAGVACDSWVLGVEAHN 256 PLI RPL+G+G A +A DS ++ + N Sbjct: 552 PLIFPERPLVGTGLEAQIAKDSGIMAISRSN 582 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,642,704 Number of Sequences: 219361 Number of extensions: 1241285 Number of successful extensions: 4229 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4212 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
