ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49d01 |
|---|---|
| Clone Library Name | barley_pub |
>GRP2_NICSY (P27484) Glycine-rich protein 2| Length = 214 Score = 114 bits (285), Expect = 2e-25 Identities = 65/169 (38%), Positives = 76/169 (44%), Gaps = 18/169 (10%) Frame = +1 Query: 64 GARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G R KGTVKWF+ KGFGFI+P+DG EDLFVHQS I+S+G+RSL E + VEF+V +G DG Sbjct: 6 GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65 Query: 244 RTKASDVTAP------------------GGGALSGGSRPSDXXXXXXXXXXXXXXXXXXX 369 RTKA DVT P GGG GGS Sbjct: 66 RTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGG 125 Query: 370 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYKCGEEGHISRDCPQ 516 C+KCGE GH +RDC Q Sbjct: 126 GGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQ 174 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CYKCGE+GH +R+C Sbjct: 196 CYKCGEDGHFAREC 209
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 100 bits (250), Expect = 2e-21 Identities = 55/151 (36%), Positives = 71/151 (47%) Frame = +1 Query: 64 GARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G R KGTVKWF+ KGFGFI+P DG +DLFVHQS+I+S+G+RSL + VEFDV + G Sbjct: 12 GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71 Query: 244 RTKASDVTAPGGGALSGGSRPSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423 R KA +V+ P G + G S Sbjct: 72 RPKAIEVSGPDGAPVQGNS---------GGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYG 122 Query: 424 XXXXXXXXXXXXXXXCYKCGEEGHISRDCPQ 516 C+KCGE GH++R+C Q Sbjct: 123 GRGSGGRGGGGGDNSCFKCGEPGHMARECSQ 153 Score = 32.0 bits (71), Expect = 1.3 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GH +RDC Sbjct: 182 CYSCGESGHFARDC 195
>CSPE_BUCBP (Q89A90) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 82.4 bits (202), Expect = 8e-16 Identities = 35/67 (52%), Positives = 54/67 (80%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L+E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKGP 60 Query: 247 TKASDVT 267 + A+ ++ Sbjct: 61 SAANVIS 67
>YBX2B_XENLA (P45441) Y-box-binding protein 2-B (Cytoplasmic RNA-binding protein| p54) (mRNP3) Length = 324 Score = 82.0 bits (201), Expect = 1e-15 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 4/88 (4%) Frame = +1 Query: 43 RFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDV 210 + ++ + +V+GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + Sbjct: 32 QINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGET 91 Query: 211 VEFDVITGDDGRTKASDVTAPGGGALSG 294 VEFDV+ G+ G +A++VT PGG + G Sbjct: 92 VEFDVVEGEKG-AEAANVTGPGGVPVKG 118
>YBOX1_RABIT (Q28618) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (p50) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>YBOX1_HUMAN (P67809) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>YBOX1_BOVIN (P67808) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 323 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 51 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 110 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 111 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 140
>CSPE_BUCAP (P63238) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 81.3 bits (199), Expect = 2e-15 Identities = 35/67 (52%), Positives = 53/67 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 60 Query: 247 TKASDVT 267 + A+ ++ Sbjct: 61 SAANVIS 67
>CSPE_BUCAI (P63237) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 81.3 bits (199), Expect = 2e-15 Identities = 35/67 (52%), Positives = 53/67 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+S+G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKGP 60 Query: 247 TKASDVT 267 + A+ ++ Sbjct: 61 SAANVIS 67
>YBOX1_RAT (P62961) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>YBOX1_MOUSE (P62960) Nuclease sensitive element-binding protein 1| (Y-box-binding protein 1) (Y-box transcription factor) (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (Enhancer factor I subunit A) (EFI-A) (DNA-binding protein B) (DBPB) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>YBOX1_CHICK (Q06066) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 321 Score = 81.3 bits (199), Expect = 2e-15 Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 49 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 108 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PGG + G +D Sbjct: 109 DVVEGEKG-AEAANVTGPGGVPVQGSKYAAD 138
>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein| p56) (mRNP4) Length = 336 Score = 80.9 bits (198), Expect = 2e-15 Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 4/85 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V+GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 35 KKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEF 94 Query: 220 DVITGDDGRTKASDVTAPGGGALSG 294 DV+ G+ G +A++VT PGG + G Sbjct: 95 DVVEGEKG-AEAANVTGPGGVPVKG 118
>CSPG_SHIFL (P0A981) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 241 GRTKASDVT 267 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECOLI (P0A978) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 241 GRTKASDVT 267 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECOL6 (P0A979) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 241 GRTKASDVT 267 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPG_ECO57 (P0A980) Cold shock-like protein cspG (CPS-G)| Length = 70 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/69 (53%), Positives = 50/69 (72%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH +AI+S+ +R+LNEN VEF + G Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQR 60 Query: 241 GRTKASDVT 267 G A+ VT Sbjct: 61 GPAAANVVT 69
>CSPE_SHIFL (P0A975) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 247 TKAS 258 + A+ Sbjct: 61 SAAN 64
>CSPE_ECOLI (P0A972) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 247 TKAS 258 + A+ Sbjct: 61 SAAN 64
>CSPE_ECOL6 (P0A973) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 247 TKAS 258 + A+ Sbjct: 61 SAAN 64
>CSPE_ECO57 (P0A974) Cold shock-like protein cspE (CSP-E)| Length = 68 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/64 (53%), Positives = 51/64 (79%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 +++KG VKWFN +KGFGFI+PEDGS+D+FVH SAI+++G+++L E VEF++ G G Sbjct: 1 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGP 60 Query: 247 TKAS 258 + A+ Sbjct: 61 SAAN 64
>DBPA_HUMAN (P16989) DNA-binding protein A (Cold shock domain-containing| protein A) (Single-strand DNA-binding protein NF-GMB) Length = 372 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 84 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 143 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 144 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 173
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVI 228 + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEFDV+ Sbjct: 92 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 151 Query: 229 TGDDGRTKASDVTAPGGGALSG 294 G+ G +A++VT PGG + G Sbjct: 152 EGEKG-ARAANVTGPGGVPVKG 172
>DBPA_XENLA (Q5PQD5) DNA-binding protein A (Cold shock domain-containing| protein A) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>DBPA_RAT (Q62764) DNA-binding protein A (Cold shock domain-containing| protein A) (Muscle Y-box protein YB2) (Y-box-binding protein-A) (RYB-A) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>DBPA_MOUSE (Q9JKB3) DNA-binding protein A (Cold shock domain-containing| protein A) (Y-box protein 3) Length = 361 Score = 78.6 bits (192), Expect = 1e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 76 KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 135 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 136 DVVEGEKG-AEAANVTGPDGVPVEGSRYAAD 165
>YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 303 Score = 78.2 bits (191), Expect = 2e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 30 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 89 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 90 DVVEGEKG-AEAANVTGPEGVPVQGSKYAAD 119
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 78.2 bits (191), Expect = 2e-14 Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 4/82 (4%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEFDVI 228 + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEFDV+ Sbjct: 90 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 149 Query: 229 TGDDGRTKASDVTAPGGGALSG 294 G+ G +A++VT PGG + G Sbjct: 150 EGEKG-AEATNVTGPGGVPVKG 170
>CSPJ_SALTY (P39818) Cold shock-like protein cspJ| Length = 70 Score = 78.2 bits (191), Expect = 2e-14 Identities = 36/61 (59%), Positives = 46/61 (75%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +R+LNEN VEF V G Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPK 60 Query: 241 G 243 G Sbjct: 61 G 61
>YB3_XENLA (Q00436) B box-binding protein (Protein YB3)| Length = 305 Score = 78.2 bits (191), Expect = 2e-14 Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + +V GTVKWFNV G+GFI+ D ED+FVHQ+AIK + RS+ + + VEF Sbjct: 30 KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 89 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT PG + G +D Sbjct: 90 DVVEGEKG-AEAANVTGPGPVPVQGSKYAAD 119
>CSPC_SALTY (P0A9Y9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_SALTI (P0A9Z0) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECOLI (P0A9Y6) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECOL6 (P0A9Y7) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPC_ECO57 (P0A9Y8) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/68 (54%), Positives = 51/68 (75%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPJ_SALTI (P58726) Cold shock-like protein cspJ| Length = 70 Score = 76.6 bits (187), Expect = 4e-14 Identities = 35/61 (57%), Positives = 45/61 (73%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +R+LNEN VEF G Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPA_SHIFL (P0A9Y4) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALTY (P0A9Y2) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALTI (P0A9Y3) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_SALEN (P0A9Y5) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECOLI (P0A9X9) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECOL6 (P0A9Y0) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>CSPA_ECO57 (P0A9Y1) Cold shock protein cspA (CSP-A) (7.4 kDa cold shock| protein) (CS7.4) Length = 69 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/67 (53%), Positives = 50/67 (74%) Frame = +1 Query: 70 RVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRT 249 ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G G Sbjct: 3 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-P 61 Query: 250 KASDVTA 270 A +VT+ Sbjct: 62 AAGNVTS 68
>YBOXH_APLCA (P41824) Y-box factor homolog (APY1)| Length = 253 Score = 76.6 bits (187), Expect = 4e-14 Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 4/91 (4%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDG----YRSLNENDVVEF 219 ++ + ++V GTVKWFNV G+GFI+ +D ED+FVHQ+AI + RS+ + + VEF Sbjct: 26 KKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEF 85 Query: 220 DVITGDDGRTKASDVTAPGGGALSGGSRPSD 312 DV+ G+ G +A++VT P G + G +D Sbjct: 86 DVVEGEKG-NEAANVTGPEGSNVQGSKYAAD 115
>CSPC_BUCAI (P57407) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 76.3 bits (186), Expect = 6e-14 Identities = 32/59 (54%), Positives = 46/59 (77%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 A++KG VKWFN +KGFGFI+P DGS+D+FVH S+I+ +G+++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQDGQKG 59
>CSPA_MICLU (O30875) Major cold shock protein| Length = 67 Score = 75.9 bits (185), Expect = 8e-14 Identities = 36/63 (57%), Positives = 47/63 (74%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 GTVKWFN KG+GFI+PED S D+FVH SAI+ +G++ L END VEF+ G G +A+ Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKELQENDRVEFETQDGPKG-LQAA 62 Query: 259 DVT 267 +VT Sbjct: 63 NVT 65
>CSPC_SHIFL (Q83RI9) Cold shock-like protein cspC (CSP-C)| Length = 68 Score = 75.5 bits (184), Expect = 1e-13 Identities = 37/68 (54%), Positives = 50/68 (73%) Frame = +1 Query: 67 ARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGR 246 A++KG VKWFN +KGFGFI+P DGS+D+FVH SAI+ +G ++L E VEF++ G G Sbjct: 1 AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTLAEGQNVEFEIQDGQKG- 59 Query: 247 TKASDVTA 270 A +VTA Sbjct: 60 PAAVNVTA 67
>CSPD_SHIFL (P0A971) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECOLI (P0A968) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECOL6 (P0A969) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPD_ECO57 (P0A970) Cold shock-like protein cspD (CSP-D)| Length = 74 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/56 (60%), Positives = 38/56 (67%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 KGTVKWFN KGFGFI PE G ED+F H S I+ DGYR+L V+FDV G G Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKG 58
>CSPI_ECOLI (P0A986) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 73.9 bits (180), Expect = 3e-13 Identities = 33/61 (54%), Positives = 45/61 (73%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +++L EN VEF + G Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPI_ECOL6 (P0A987) Cold shock-like protein cspI (CPS-I)| Length = 70 Score = 73.9 bits (180), Expect = 3e-13 Identities = 33/61 (54%), Positives = 45/61 (73%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFI+P+DGS+D+FVH SAI+S+ +++L EN VEF + G Sbjct: 1 MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPB_ECOLI (P36995) Cold shock-like protein cspB (CSP-B)| Length = 71 Score = 73.9 bits (180), Expect = 3e-13 Identities = 35/66 (53%), Positives = 45/66 (68%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWFN KGFGFISP DGS+D+FVH SAI++D YR+L E V F + +G Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAK 60 Query: 241 GRTKAS 258 G A+ Sbjct: 61 GPAAAN 66
>CSPA_MYCTU (P63848) Probable cold shock protein A| Length = 67 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/50 (62%), Positives = 40/50 (80%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 225 +GTVKWFN KGFGFI+PEDGS D+FVH + I+ G+R+L EN VEF++ Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>CSPA_MYCBO (P63849) Probable cold shock protein A| Length = 67 Score = 73.9 bits (180), Expect = 3e-13 Identities = 31/50 (62%), Positives = 40/50 (80%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 225 +GTVKWFN KGFGFI+PEDGS D+FVH + I+ G+R+L EN VEF++ Sbjct: 3 QGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>CSPC_BACCR (P62171) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 4e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 252 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 253 ASDV 264 A+ V Sbjct: 60 ANVV 63
>CSPC_BACCE (P62170) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 4e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 252 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 253 ASDV 264 A+ V Sbjct: 60 ANVV 63
>CSPC_BACAN (P62169) Cold shock-like protein cspC| Length = 65 Score = 73.6 bits (179), Expect = 4e-13 Identities = 36/64 (56%), Positives = 45/64 (70%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 252 ++G VKWFN KGFGFI EDG +D+FVH SAI+ DGY+SL E VEFD++ G G Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 253 ASDV 264 A+ V Sbjct: 60 ANVV 63
>CSP7_STRCL (Q01761) Cold shock-like protein 7.0| Length = 66 Score = 73.6 bits (179), Expect = 4e-13 Identities = 33/53 (62%), Positives = 39/53 (73%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGD 237 GTVKWFN KGFGFI+ + G D+FVH SAI + G+RSL EN VV FDV G+ Sbjct: 4 GTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE 56
>CAPA_PSEFR (P72188) Cold shock protein capA (Cold acclimation protein A)| (C7.0) (Fragment) Length = 64 Score = 73.2 bits (178), Expect = 5e-13 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPA_STIAU (P72366) Cold shock-like protein cspA| Length = 68 Score = 71.2 bits (173), Expect = 2e-12 Identities = 32/55 (58%), Positives = 38/55 (69%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 GTVKWFN KGFGFI+ + G ED+F H SAI DG+R+L E VEF+V G G Sbjct: 4 GTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMDGFRTLQEGQKVEFEVTRGPKG 58
>CSPB_YERPE (P0A362) Cold shock-like protein cspB| Length = 70 Score = 70.9 bits (172), Expect = 2e-12 Identities = 32/61 (52%), Positives = 43/61 (70%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWF+ KGFGFISP DGS+D+FVH SAI+ + Y++L+E VEF + G Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPB_YEREN (P0A363) Cold shock-like protein cspB| Length = 70 Score = 70.9 bits (172), Expect = 2e-12 Identities = 32/61 (52%), Positives = 43/61 (70%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VKWF+ KGFGFISP DGS+D+FVH SAI+ + Y++L+E VEF + G Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 241 G 243 G Sbjct: 61 G 61
>CSPA_RHIME (Q9Z3S6) Cold shock protein cspA| Length = 69 Score = 70.9 bits (172), Expect = 2e-12 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG-DDGRTKA 255 GTVKWFN TKGFGFI P+DG+ D+FVH SA++ G RSL E V +D++ G++ A Sbjct: 4 GTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTKSGKSSA 63 Query: 256 SDVTA 270 ++ A Sbjct: 64 DNLRA 68
>CSPC_BACSU (P39158) Cold shock protein cspC| Length = 66 Score = 70.1 bits (170), Expect = 4e-12 Identities = 35/61 (57%), Positives = 44/61 (72%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +GTVKWFN KGFGFI E+G +D+FVH SAI+SDG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQSDGFKSLDEGQKVSFDVEQGARGAQAA 61 Query: 256 S 258 + Sbjct: 62 N 62
>CSPB_BACCE (Q45097) Cold shock-like protein cspB| Length = 65 Score = 70.1 bits (170), Expect = 4e-12 Identities = 35/62 (56%), Positives = 43/62 (69%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 252 + G VKWFN KGFGFI E GSED+FVH SAI+SDGY++L E V FD+ G+ G Sbjct: 1 MNGKVKWFNNEKGFGFIEME-GSEDVFVHFSAIQSDGYKALEEGQEVSFDITEGNRGPQA 59 Query: 253 AS 258 A+ Sbjct: 60 AN 61
>CSPA_LISMO (P0A355) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 69.3 bits (168), Expect = 7e-12 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +GTVKWFN KGFGFI E+G +D+FVH SAI+ DG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAA 61 Query: 256 S 258 + Sbjct: 62 N 62
>CSPA_LISIN (P0A356) Cold shock-like protein cspLA (CspL)| Length = 66 Score = 69.3 bits (168), Expect = 7e-12 Identities = 34/61 (55%), Positives = 43/61 (70%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +GTVKWFN KGFGFI E+G +D+FVH SAI+ DG++SL+E V FDV G G A Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAA 61 Query: 256 S 258 + Sbjct: 62 N 62
>CSP_ARTGO (P54584) Cold shock protein| Length = 67 Score = 68.9 bits (167), Expect = 9e-12 Identities = 32/64 (50%), Positives = 47/64 (73%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +GTVKWFN KGFGFI+P+D D+FVH S I++ G+++L+EN V+F++ G G +A Sbjct: 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKG-PQA 61 Query: 256 SDVT 267 + VT Sbjct: 62 TGVT 65
>CSPA_VIBCH (Q9KN00) Cold shock-like protein cspA| Length = 70 Score = 68.9 bits (167), Expect = 9e-12 Identities = 34/70 (48%), Positives = 48/70 (68%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G+VKWFN TKGFGFIS ++G +D+FVH +I S+G+++L E V F V G Sbjct: 1 MSQKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKK 60 Query: 241 GRTKASDVTA 270 G +A+ VTA Sbjct: 61 G-PQAAQVTA 69
>CAPB_PSESM (P0A105) Cold shock protein capB (Cold acclimation protein B)| Length = 69 Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59 Query: 241 G 243 G Sbjct: 60 G 60
>CAPB_PSEFR (P0A106) Cold shock protein capB (Cold acclimation protein B)| (C8.0) Length = 69 Score = 68.2 bits (165), Expect = 2e-11 Identities = 34/61 (55%), Positives = 40/61 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M R GTVKWFN KGFGFI+P+ G +DLFVH AI+SDG++SL E V F G Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQSG-DDLFVHFKAIQSDGFKSLKEGQQVSFIATRGQK 59 Query: 241 G 243 G Sbjct: 60 G 60
>CSP2_LACPL (P96349) Cold shock protein 2| Length = 66 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/55 (58%), Positives = 42/55 (76%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 GTVKWFN KGFGFI+ EDG+ D+FVH SAI++DG+++L+E V +D GD G Sbjct: 4 GTVKWFNADKGFGFITGEDGT-DVFVHFSAIQTDGFKTLDEGQKVTYDEEQGDRG 57
>Y4CH_RHISN (P55390) Probable cold shock protein y4cH| Length = 69 Score = 67.4 bits (163), Expect = 3e-11 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG-DDGRTKA 255 GTVKWFN TKGFGFI P+DGS D+FVH SA++ G R L + + ++++ G+ A Sbjct: 5 GTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRKSGKMSA 64 Query: 256 SDVTA 270 ++ A Sbjct: 65 DNLQA 69
>CSPA_PSEAE (P95459) Major cold shock protein cspA| Length = 69 Score = 67.4 bits (163), Expect = 3e-11 Identities = 33/61 (54%), Positives = 40/61 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M R GTVKWFN KGFGFI+PE G+ DLFVH +I+ G++SL E V F V+ G Sbjct: 1 MSNRQNGTVKWFNDAKGFGFITPESGN-DLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 241 G 243 G Sbjct: 60 G 60
>CSPV_VIBCH (Q9KL16) Cold shock protein cspV| Length = 70 Score = 67.0 bits (162), Expect = 4e-11 Identities = 32/70 (45%), Positives = 49/70 (70%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G+VKWFN TKGFGF++ ++G D+FVH ++I+S+G+++L E V F V G Sbjct: 1 MSTKMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKK 60 Query: 241 GRTKASDVTA 270 G +AS+V A Sbjct: 61 G-PQASNVVA 69
>CSPF_STRCO (P48859) Cold shock protein scoF| Length = 67 Score = 66.6 bits (161), Expect = 5e-11 Identities = 31/63 (49%), Positives = 39/63 (61%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 GTVKWFN KGFGFI+ + G D+F H S I + GYR L E V FD+ G G +A Sbjct: 4 GTVKWFNSEKGFGFIAQDGGGPDVFAHYSNINAQGYRELQEGQAVTFDITQGQKG-PQAE 62 Query: 259 DVT 267 ++T Sbjct: 63 NIT 65
>CSPB_LISMO (P0A357) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 66.6 bits (161), Expect = 5e-11 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 GTVKWFN KGFGFI E G +D+FVH SAI+ +G+++L+E VEF+++ G G Sbjct: 4 GTVKWFNSEKGFGFIEVE-GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRG 57
>CSPB_LISIN (P0A358) Cold shock-like protein cspLB (CspB)| Length = 66 Score = 66.6 bits (161), Expect = 5e-11 Identities = 30/55 (54%), Positives = 41/55 (74%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 GTVKWFN KGFGFI E G +D+FVH SAI+ +G+++L+E VEF+++ G G Sbjct: 4 GTVKWFNSEKGFGFIEVE-GGDDVFVHFSAIEGEGFKTLDEGQSVEFEIVEGQRG 57
>CSP1_LACPL (P71478) Cold shock protein 1| Length = 66 Score = 66.6 bits (161), Expect = 5e-11 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 GTVKWFN KG+GFI+ EDG+ D+FVH SAI++DG+++L E V FD + D G A+ Sbjct: 4 GTVKWFNADKGYGFITGEDGN-DVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAAN 62 Query: 259 DV 264 V Sbjct: 63 VV 64
>TAPB_PSEFR (P72192) Temperature acclimation protein B (E8.0) (Fragment)| Length = 63 Score = 66.2 bits (160), Expect = 6e-11 Identities = 33/61 (54%), Positives = 39/61 (63%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M R GTVKWFN KGFGFI+PE G DLFVH AI+ +G++SL E V F + G Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 241 G 243 G Sbjct: 60 G 60
>CSPD_BACCE (Q45099) Cold shock-like protein cspD| Length = 66 Score = 65.9 bits (159), Expect = 8e-11 Identities = 33/63 (52%), Positives = 45/63 (71%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 G VKWFN KGFGFI E G ED+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNGEKGFGFIEVE-GGEDVFVHFSAIQGDGFKTLEEGQEVSFEIVDGNRG-PQAA 61 Query: 259 DVT 267 +VT Sbjct: 62 NVT 64
>CSPD_BACSU (P51777) Cold shock protein cspD| Length = 66 Score = 65.5 bits (158), Expect = 1e-10 Identities = 33/62 (53%), Positives = 44/62 (70%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 G VKWFN KGFGFI E G +D+FVH +AI+ DGY+SL E V F+++ G+ G +AS Sbjct: 4 GKVKWFNNEKGFGFIEVE-GGDDVFVHFTAIEGDGYKSLEEGQEVSFEIVEGNRG-PQAS 61 Query: 259 DV 264 +V Sbjct: 62 NV 63
>CSPA_STRP8 (P0A361) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_STRP3 (P0A360) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_STRP1 (P0C0F1) Major cold shock protein| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 31/56 (55%), Positives = 41/56 (73%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 +GTVKWFN KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEGQRG 57
>CSPA_SHEVI (Q9S1B7) Cold shock-like protein cspA| Length = 70 Score = 65.5 bits (158), Expect = 1e-10 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 GTVKWFN KGFGF++ ++G D+FVH AI S+G+++L+E V F+V G G +AS Sbjct: 7 GTVKWFNEDKGFGFLTQDNGGADVFVHFRAIASEGFKTLDEGQKVTFEVEQGPKG-LQAS 65 Query: 259 DVTA 270 +V A Sbjct: 66 NVIA 69
>CSPA_BORPE (P0A352) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPA_BORPA (P0A354) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPA_BORBR (P0A353) Cold shock-like protein cspA| Length = 67 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/55 (52%), Positives = 37/55 (67%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KG+GFI+PE G +DLF H S I+++G++SL EN V F G G Sbjct: 4 GVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKG 58
>CSPD_HAEIN (P46449) Cold shock-like protein cspD| Length = 72 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/55 (54%), Positives = 35/55 (63%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KGFGFIS E D+F H S I+ DGYRSL V+F+V+ D G Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDKG 58
>CSPD_BACCR (Q816H3) Cold shock-like protein cspD| Length = 66 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/63 (50%), Positives = 45/63 (71%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 G VKWFN KGFGFI E G +D+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRG-PQAA 61 Query: 259 DVT 267 +VT Sbjct: 62 NVT 64
>CSPD_BACAN (Q81K90) Cold shock-like protein cspD| Length = 66 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/63 (50%), Positives = 45/63 (71%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 G VKWFN KGFGFI E G +D+FVH SAI+ DG+++L E V F+++ G+ G +A+ Sbjct: 4 GKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRG-PQAA 61 Query: 259 DVT 267 +VT Sbjct: 62 NVT 64
>CSPB_BACSU (P32081) Cold shock protein cspB (Major cold shock protein)| Length = 67 Score = 65.1 bits (157), Expect = 1e-10 Identities = 31/65 (47%), Positives = 47/65 (72%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTK 252 ++G VKWFN KGFGFI E G +D+FVH SAI+ +G+++L E V F+++ G+ G + Sbjct: 2 LEGKVKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKTLEEGQAVSFEIVEGNRG-PQ 59 Query: 253 ASDVT 267 A++VT Sbjct: 60 AANVT 64
>CSPA_STRP6 (Q5X9L4) Major cold shock protein| Length = 67 Score = 65.1 bits (157), Expect = 1e-10 Identities = 31/56 (55%), Positives = 40/56 (71%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 +GTVKWFN KGFGFIS E+G +D+F H SAI++ G+++L E V FDV G G Sbjct: 3 QGTVKWFNAEKGFGFISTENG-QDVFAHFSAIQTSGFKTLEEGQKVAFDVEEGQRG 57
>CSPG_SHEVI (Q9S170) Cold shock-like protein cspG| Length = 70 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/68 (45%), Positives = 42/68 (61%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M G VKWFN KGFGFI+ ++G +D+FVH +I SDG+++L E V F+V G Sbjct: 1 MSNSTTGLVKWFNEEKGFGFITQDNGGDDVFVHFRSITSDGFKTLAEGQKVSFEVEQGQK 60 Query: 241 GRTKASDV 264 G A+ V Sbjct: 61 GLQAANVV 68
>CSPD_VIBCH (Q9KSW4) Cold shock-like protein cspD| Length = 76 Score = 63.5 bits (153), Expect = 4e-10 Identities = 33/75 (44%), Positives = 39/75 (52%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M + GTVKWFN KGFGFI PE D+F H S I+ DGYR+L V + V G Sbjct: 1 MYSMATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPK 60 Query: 241 GRTKASDVTAPGGGA 285 G + V G A Sbjct: 61 GYHASCVVPIEGQSA 75
>CSPB_BACST (P42016) Cold shock protein cspB (Major cold shock protein)| Length = 66 Score = 62.8 bits (151), Expect = 7e-10 Identities = 30/63 (47%), Positives = 43/63 (68%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +G VKWFN KG+GFI E GS D+FVH +AI+ +G++SL E V F+++ G+ G A Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKSLEEGQEVSFEIVQGNRGPQAA 61 Query: 256 SDV 264 + V Sbjct: 62 NVV 64
>CSPE_BACCR (Q81DK5) Cold shock-like protein cspE| Length = 67 Score = 62.4 bits (150), Expect = 9e-10 Identities = 31/55 (56%), Positives = 38/55 (69%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KGFGFI DG+ D+FVH SAI DG++SL+E V F+V G+ G Sbjct: 5 GKVKWFNSEKGFGFIEVADGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEEGNRG 58
>CSPE_BACAN (Q81QK2) Cold shock-like protein cspE| Length = 67 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/55 (56%), Positives = 38/55 (69%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 G VKWFN KGFGFI E G+ D+FVH SAI DG++SL+E V F+V G+ G Sbjct: 5 GKVKWFNSEKGFGFIEVEGGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEDGNRG 58
>CSP_THEMA (O54310) Cold shock-like protein| Length = 66 Score = 61.6 bits (148), Expect = 1e-09 Identities = 27/57 (47%), Positives = 42/57 (73%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 ++G VKWF+ KG+GFI+ ++G D+FVH SAI+ +G+++L E VVEF++ G G Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG 56
>CSPB_BACCL (P41016) Cold shock protein cspB| Length = 66 Score = 61.6 bits (148), Expect = 1e-09 Identities = 29/63 (46%), Positives = 43/63 (68%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKA 255 +G VKWFN KG+GFI E GS D+FVH +AI+ +G+++L E V F+++ G+ G A Sbjct: 3 RGKVKWFNNEKGYGFIEVEGGS-DVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRGPQAA 61 Query: 256 SDV 264 + V Sbjct: 62 NVV 64
>CSP_AQUAE (O67327) Cold shock-like protein| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = +1 Query: 76 KGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 +GTVKWF+ KG+GFI+ ED + D+FVH + I+ +G+++L + VEFDV+ G Sbjct: 4 RGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDTKG 59
>CSPA_RICPR (Q9ZCP9) Cold shock-like protein cspA| Length = 70 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/55 (49%), Positives = 36/55 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 225 M + G VKW+N TK FGFI ++G +D+FVH+SAI + G SL E V FD+ Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAIDAAGLHSLEEGQEVIFDI 55
>CSPE_BACCE (Q45100) Cold shock-like protein cspE (Fragment)| Length = 54 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/49 (61%), Positives = 35/49 (71%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 225 G VKWFN KGFGFI DGS D+FVH SAI DG++SL+E V F+V Sbjct: 5 GKVKWFNSEKGFGFIEVADGS-DVFVHFSAITGDGFKSLDEGQEVSFEV 52
>CSPA_BACCR (Q81GQ6) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRG 58
>CSPA_BACCE (Q45096) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEDGNRG 58
>CSPA_BACAN (Q81TW8) Major cold shock protein cspA| Length = 67 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = +1 Query: 73 VKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 V G VKWFN KGFGFI G D+FVH SAI++DG++SL E V F++ G+ G Sbjct: 3 VTGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRG 58
>CSPB_BACGO (P41018) Cold shock protein cspB (Fragment)| Length = 57 Score = 60.5 bits (145), Expect = 3e-09 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = +1 Query: 85 VKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKAS 258 +KWFN KGFGFI E G +D+FVH SAI+ +G++ L E V F+++ G+ G A+ Sbjct: 1 IKWFNSEKGFGFIEVE-GQDDVFVHFSAIQGEGFKCLEEGQAVSFEIVEGNRGPQAAN 57
>CSPA_SHIBO (Q53816) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_SALVI (Q56178) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_ENTAE (Q46664) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_CITFR (Q46051) Major cold shock protein (Fragment)| Length = 46 Score = 60.5 bits (145), Expect = 3e-09 Identities = 26/43 (60%), Positives = 36/43 (83%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+P+DGS+D+FVH SAI++DGY+SL+E V F + +G Sbjct: 2 KGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESG 44
>CSPA_RICCN (Q92GV1) Cold shock-like protein cspA| Length = 70 Score = 59.7 bits (143), Expect = 6e-09 Identities = 26/55 (47%), Positives = 36/55 (65%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDV 225 M + G VKW+N TK FGFI ++G +D+FVH+SA+ + G SL E V FD+ Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDL 55
>CSPA_KLEPN (Q48493) Major cold shock protein (Fragment)| Length = 46 Score = 59.3 bits (142), Expect = 7e-09 Identities = 26/44 (59%), Positives = 35/44 (79%) Frame = +1 Query: 103 TKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 +KGFGFISP+DGS+D+FVH SAI+SD +++LNE V F + G Sbjct: 1 SKGFGFISPKDGSKDVFVHFSAIQSDSFKTLNEGQEVSFTIENG 44
>CSPA_AERHY (Q44078) Major cold-shock protein (Fragment)| Length = 46 Score = 55.8 bits (133), Expect = 8e-08 Identities = 25/43 (58%), Positives = 34/43 (79%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFISP DGS+D+FVH SAI++ G+++L+E VEF + G Sbjct: 2 KGFGFISPTDGSKDVFVHFSAIQTPGFKTLDEGQRVEFTIEQG 44
>CSPA_YEREN (Q56922) Major cold shock protein (Fragment)| Length = 46 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/43 (55%), Positives = 34/43 (79%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+P DGS+D+FVH SAI+S+ +++L+E VEF + G Sbjct: 2 KGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENG 44
>CSPA_AERSA (Q44317) Major cold-shock protein (Fragment)| Length = 46 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/43 (58%), Positives = 33/43 (76%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFISP DGS+D+FVH SAI+S +++L+E VEF + G Sbjct: 2 KGFGFISPADGSKDVFVHFSAIQSTSFKTLDEGQRVEFTIEQG 44
>TAPA_PSEFR (P72191) Temperature acclimation protein A (E7.0) (Fragment)| Length = 59 Score = 51.6 bits (122), Expect = 2e-06 Identities = 26/50 (52%), Positives = 32/50 (64%) Frame = +1 Query: 94 FNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDG 243 FN KGFGFI+PE G DLFVH AI+ +G++SL E V F + G G Sbjct: 1 FNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQKG 49
>CSPA_STRDY (Q53984) Major cold shock protein (Fragment)| Length = 45 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/43 (55%), Positives = 33/43 (76%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFIS E+G +D+F H SAI+++G+++L E VEFDV G Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVEFDVEEG 43
>CSPA_PHOMO (Q51929) Major cold shock protein (Fragment)| Length = 46 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGF++ +G D+FVH AI S+G+++L E V FDV G Sbjct: 2 KGFGFLTQNNGGADVFVHFRAIASEGFKTLTEGQKVSFDVEQG 44
>CSPA_STRPY (P0C0F0) Major cold shock protein (Fragment)| Length = 45 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/43 (53%), Positives = 32/43 (74%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFIS E+G +D+F H SAI+++G+++L E V FDV G Sbjct: 2 KGFGFISTENG-QDVFAHFSAIQTNGFKTLEEGQKVAFDVEEG 43
>CSPA_PHOPO (Q52287) Major cold shock protein (Fragment)| Length = 46 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +1 Query: 106 KGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 KGFGFI+ ++G D+FVH AI S+G+++L E V F+V G Sbjct: 2 KGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQG 44
>CSDC2_HUMAN (Q9Y534) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 153 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 62 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 104
>CSDC2_RAT (Q63430) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 63 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSDC2_MOUSE (Q91YQ3) Cold shock domain-containing protein C2 (RNA-binding| protein PIPPin) Length = 154 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/43 (48%), Positives = 29/43 (67%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F+ ++G GFI+PE+GSED+FVH S I+ + Sbjct: 63 RASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIEGE 105
>CSPH_SALTY (P0A1D9) Cold shock-like protein cspH| Length = 70 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/66 (37%), Positives = 34/66 (51%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G G I+P DG +D+ VH SA + +L VEF I G Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_SALTI (P0A1E0) Cold shock-like protein cspH| Length = 70 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/66 (37%), Positives = 34/66 (51%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G G I+P DG +D+ VH SA + +L VEF I G Sbjct: 1 MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 40.4 bits (93), Expect = 0.004 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQXXXXXXXXXXXXXRECY 567 CYKCG+ GHISR+CP+ R CY Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCY 256 Score = 39.3 bits (90), Expect = 0.008 Identities = 13/15 (86%), Positives = 15/15 (100%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CYKCG+EGH+SRDCP Sbjct: 99 CYKCGQEGHLSRDCP 113 Score = 38.9 bits (89), Expect = 0.010 Identities = 14/15 (93%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CYKCGE GHISRDCP Sbjct: 255 CYKCGEAGHISRDCP 269 Score = 37.7 bits (86), Expect = 0.023 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CYKCG+ GHISRDCP Sbjct: 170 CYKCGDAGHISRDCP 184 Score = 37.7 bits (86), Expect = 0.023 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CYKCG+ GHISRDCP Sbjct: 142 CYKCGDAGHISRDCP 156 Score = 36.6 bits (83), Expect = 0.051 Identities = 12/15 (80%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CYKCGE GH+SR+CP Sbjct: 198 CYKCGESGHMSRECP 212 Score = 35.8 bits (81), Expect = 0.087 Identities = 11/15 (73%), Positives = 15/15 (100%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C++CGEEGH+SR+CP Sbjct: 45 CFRCGEEGHMSRECP 59 Score = 35.0 bits (79), Expect = 0.15 Identities = 11/15 (73%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C++CGE GH+SRDCP Sbjct: 72 CFRCGEAGHMSRDCP 86 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C CG+EGH +R+CP+ Sbjct: 18 CRNCGKEGHYARECPE 33
>CHSP1_RAT (Q9WU49) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 56 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CHSP1_HUMAN (Q9Y2V2) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 147 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 56 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 98
>CHSP1_MOUSE (Q9CR86) Calcium-regulated heat stable protein 1 (Calcium-regulated| heat-stable protein of 24 kDa) (CRHSP-24) Length = 148 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +1 Query: 52 RRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSD 180 R G KG K F +KG GFI+P DG D+F+H S ++ + Sbjct: 57 RASQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE 99
>CSPS_STRTR (P81622) Cold shock protein CspSt (Fragment)| Length = 21 Score = 37.7 bits (86), Expect = 0.023 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = +1 Query: 79 GTVKWFNVTKGFGFISPED 135 GTVKWFN KGFGFI+ ED Sbjct: 3 GTVKWFNAEKGFGFITSED 21
>CSPH_SHIFL (P0A985) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.051 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECOLI (P0A982) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.051 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECOL6 (P0A983) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.051 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>CSPH_ECO57 (P0A984) Cold shock-like protein cspH (CSP-H)| Length = 70 Score = 36.6 bits (83), Expect = 0.051 Identities = 24/66 (36%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G GFI P DG +++ VH SA L VEF + G Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 Query: 241 GRTKAS 258 G T A+ Sbjct: 61 GPTAAN 66
>CSPF_ECOLI (P0A976) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G G I+P DG D+ +H SA+ + VEF I G Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLR 60 Query: 241 GRTKAS 258 G + A+ Sbjct: 61 GPSAAN 66
>CSPF_ECOL6 (P0A977) Cold shock-like protein cspF (CSP-F)| Length = 70 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/66 (33%), Positives = 32/66 (48%) Frame = +1 Query: 61 MGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDD 240 M ++ G VK F+ G G I+P DG D+ +H SA+ + VEF I G Sbjct: 1 MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLR 60 Query: 241 GRTKAS 258 G + A+ Sbjct: 61 GPSAAN 66
>GIS2_YEAST (P53849) Zinc-finger protein GIS2| Length = 153 Score = 33.9 bits (76), Expect = 0.33 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY C E GHIS+DCP+ Sbjct: 137 CYNCNETGHISKDCPK 152 Score = 31.6 bits (70), Expect = 1.6 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH+SRDC Sbjct: 118 CYTCGQAGHMSRDC 131 Score = 31.2 bits (69), Expect = 2.1 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+ C + GHISR+CP+ Sbjct: 67 CFNCNQTGHISRECPE 82 Score = 29.3 bits (64), Expect = 8.1 Identities = 11/32 (34%), Positives = 13/32 (40%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQXXXXXXXXXXXXXREC 564 CY CGE GH+ +C REC Sbjct: 49 CYNCGETGHVRSECTVQRCFNCNQTGHISREC 80
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 33.5 bits (75), Expect = 0.43 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGQEGHWSKECP 176
>CSDE1_RAT (P18395) Cold shock domain-containing protein E1 (UNR protein)| Length = 798 Score = 33.5 bits (75), Expect = 0.43 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARYQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 235 DDGRTKASDV 264 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 112 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 264 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>CSDE1_MOUSE (Q91W50) Cold shock domain-containing protein E1| Length = 798 Score = 33.5 bits (75), Expect = 0.43 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARCQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 235 DDGRTKASDV 264 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 112 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 264 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>CSDE1_HUMAN (O75534) Cold shock domain-containing protein E1 (UNR protein)| (N-ras upstream gene protein) Length = 798 Score = 33.5 bits (75), Expect = 0.43 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 +K AR +G V + + FGFI D +++F H S K D +L D VEF I Sbjct: 180 KKKQARCQGVV--CAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEF-TIKD 235 Query: 235 DDGRTKASDV 264 +G+ A+DV Sbjct: 236 RNGKEVATDV 245 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +1 Query: 112 FGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITGDDGRTKASDV 264 FGFI + +++F H S D SL D+VE+ + G + A V Sbjct: 530 FGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKV 579
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 33.1 bits (74), Expect = 0.56 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+CG+EGH S++CP Sbjct: 162 CYRCGKEGHWSKECP 176
>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog| Length = 179 Score = 32.7 bits (73), Expect = 0.73 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CYKCG GHI+RDC Sbjct: 85 CYKCGRVGHIARDC 98 Score = 31.2 bits (69), Expect = 2.1 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG GH+ RDCP Sbjct: 60 CYACGTAGHLVRDCP 74 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GH +R+C Sbjct: 19 CYNCGENGHQAREC 32
>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6| Length = 1491 Score = 32.3 bits (72), Expect = 0.96 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+ CG EGHI ++CPQ Sbjct: 1449 CFICGREGHIKKECPQ 1464
>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 32.3 bits (72), Expect = 0.96 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG GH +R+CP Sbjct: 6 CFKCGRSGHWARECP 20 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG GHI++DC + Sbjct: 74 CYNCGRGGHIAKDCKE 89
>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 32.3 bits (72), Expect = 0.96 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG GH +R+CP Sbjct: 6 CFKCGRSGHWARECP 20 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG GHI++DC + Sbjct: 74 CYNCGRGGHIAKDCKE 89
>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 177 Score = 32.3 bits (72), Expect = 0.96 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH++R+C Sbjct: 158 CYRCGESGHLAREC 171 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GHI +DC Sbjct: 119 CYSCGEFGHIQKDC 132 Score = 30.8 bits (68), Expect = 2.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH++RDC Sbjct: 98 CYNCGKPGHLARDC 111 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG GH +R+CP Sbjct: 6 CFKCGRSGHWARECP 20 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG GHI++DC + Sbjct: 74 CYNCGRGGHIAKDCKE 89
>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 178 Score = 32.3 bits (72), Expect = 0.96 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH+++DC Sbjct: 54 CYRCGESGHLAKDC 67 Score = 32.0 bits (71), Expect = 1.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH++R+C Sbjct: 159 CYRCGESGHLAREC 172 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GHI +DC Sbjct: 120 CYSCGEFGHIQKDC 133 Score = 30.8 bits (68), Expect = 2.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH++RDC Sbjct: 99 CYNCGKPGHLARDC 112 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG GH +R+CP Sbjct: 6 CFKCGRSGHWARECP 20 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG GHI++DC + Sbjct: 75 CYNCGRGGHIAKDCKE 90
>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6| Length = 1495 Score = 32.3 bits (72), Expect = 0.96 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+ CG EGHI ++CPQ Sbjct: 1453 CFICGREGHIKKECPQ 1468
>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger| protein 9) Length = 172 Score = 32.3 bits (72), Expect = 0.96 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH+++DC Sbjct: 48 CYRCGESGHLAKDC 61 Score = 32.0 bits (71), Expect = 1.3 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE GH++R+C Sbjct: 153 CYRCGESGHLAREC 166 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CGE GHI +DC Sbjct: 114 CYSCGEFGHIQKDC 127 Score = 30.8 bits (68), Expect = 2.8 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG+ GH++RDC Sbjct: 93 CYNCGKPGHLARDC 106 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG GHI++DC + Sbjct: 69 CYNCGRGGHIAKDCKE 84 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG GH +R+CP Sbjct: 6 CFKCGRTGHWARECP 20
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline| helicase 4) Length = 1156 Score = 32.0 bits (71), Expect = 1.3 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CGEEGHIS++C Sbjct: 572 CHNCGEEGHISKEC 585
>SYK_LACPL (Q88Z28) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 499 Score = 32.0 bits (71), Expect = 1.3 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Frame = +1 Query: 25 ARVLVLRFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNEN 204 A+ +V R + R KG V GF I G L++ + + D Y + Sbjct: 57 AKQVVATIAGRMLAKRGKGKV-------GFADIWDRSGKMQLYIRKDVVGEDTYHIFKRS 109 Query: 205 DVVEFDVITGDDGRTKASDVTAPGGGA--LSGGSRP 306 D+ +F ITG +T ++T G LS RP Sbjct: 110 DIGDFLGITGQVFKTDFGELTIKVTGLTFLSKALRP 145
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 31.2 bits (69), Expect = 2.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+ CGE GH+SR CP Sbjct: 186 CFVCGEMGHLSRSCP 200
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 31.2 bits (69), Expect = 2.1 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY+CG GH S++CP+ Sbjct: 170 CYRCGRSGHWSKECPR 185
>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9| Length = 273 Score = 31.2 bits (69), Expect = 2.1 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+ CGE GH+SR CP Sbjct: 186 CFVCGEMGHLSRSCP 200
>MYO1A_CHICK (P47807) Myosin Ia (Brush border myosin I) (BBM-I) (BBMI) (Myosin I| heavy chain) (MIHC) Length = 1045 Score = 30.8 bits (68), Expect = 2.8 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Frame = +1 Query: 28 RVLVLRFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSE----DLFV---HQSAIKSDGY 186 R L RF R ++ + V N K +PE E + F H AI D Y Sbjct: 29 RTLQERFSRGEIYTYIGEVVISVNPYKPLPIYTPEKVEEYHNCNFFAVKPHIYAIADDAY 88 Query: 187 RSLNENDVVEFDVITGDD--GRTKASDVTAPGGGALSGGSRPSD 312 RSL + D + +ITG+ G+T+AS + A+S D Sbjct: 89 RSLRDRDRDQCILITGESGAGKTEASKLVMSYVAAVSSKGEEVD 132
>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 428 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C++CG+ GH SRDC Q Sbjct: 356 CFRCGKAGHWSRDCTQ 371
>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+C +EGH +RDCP Sbjct: 346 CYRCLKEGHWARDCP 360
>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix| protein); Core protein p24; Core protein p12] Length = 391 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY+C +EGH +RDCP Sbjct: 346 CYRCLKEGHWARDCP 360
>ZCH13_HUMAN (Q8WW36) Zinc finger CCHC domain-containing protein 13| Length = 166 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GHI +DC Q Sbjct: 112 CYSCGKLGHIQKDCAQ 127 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG GHI++DC Sbjct: 67 CYNCGRSGHIAKDC 80 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY CG GH++RDC Sbjct: 91 CYTCGRLGHLARDC 104
>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C++CG+ GH SRDC Q Sbjct: 357 CFRCGKAGHWSRDCTQ 372
>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major| core protein p24; Nucleic acid-binding protein p15] Length = 429 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C++CG+ GH SRDC Q Sbjct: 357 CFRCGKAGHWSRDCTQ 372
>SYK_STRP8 (Q8P1X6) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVSEDNYEIFKKADLGDFIGVEG 120 Query: 235 DDGRTKASDVT 267 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>SYK_STRP6 (Q5XD62) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVSEDNYEIFKKADLGDFIGVEG 120 Query: 235 DDGRTKASDVT 267 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline| helicase 2) Length = 974 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY C + GH SRDCP+ Sbjct: 398 CYNCQQPGHNSRDCPE 413 Score = 30.8 bits (68), Expect = 2.8 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY C + GH SRDCP+ Sbjct: 284 CYNCQQPGHNSRDCPE 299 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+ CGE+GH S +CP Sbjct: 475 CFNCGEQGHRSNECP 489
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>POL_HV1B5 (P04587) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>POL_HV1C4 (P05960) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 549 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG EGH +DC + Sbjct: 412 CWKCGREGHQMKDCTE 427
>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1438 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline| helicase 1) Length = 763 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+ CGE+GH S +CP Sbjct: 264 CFNCGEQGHRSNECP 278
>GAG_HV1JR (P20873) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 503 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT| 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] Length = 1328 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY C + GH RDCP Sbjct: 232 CYNCNQPGHFKRDCP 246
>GAG_HV1BR (P03348) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>GAG_HV1B5 (P04593) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 520 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH+ R CP+ Sbjct: 400 CYNCGKFGHMQRQCPE 415
>GAG_HV2D1 (P17756) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GHI +CP+ Sbjct: 411 CWKCGKSGHIMANCPE 426
>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 622 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ R CP Sbjct: 592 CYNCGQIGHLKRSCP 606
>GAG_HV1LW (Q70622) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>GAG_HV1C4 (P05887) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/14 (64%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+R+C Sbjct: 391 CFNCGKEGHIARNC 404 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG EGH +DC + Sbjct: 412 CWKCGREGHQMKDCTE 427
>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core| protein p24; Core protein p12 (p15)] Length = 432 Score = 30.4 bits (67), Expect = 3.6 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C++CG+ GH SRDC Q Sbjct: 362 CFRCGKVGHWSRDCTQ 377
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GHI +CP+ Sbjct: 411 CWKCGKSGHIMANCPE 426
>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 519 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH+ R CP+ Sbjct: 399 CYNCGKFGHMQRQCPE 414
>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein| p24; Core protein p15] Length = 521 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH+ R CP+ Sbjct: 404 CYNCGKFGHMQRQCPE 419
>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 666 Score = 30.4 bits (67), Expect = 3.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ R CP Sbjct: 544 CYNCGQIGHLKRSCP 558
>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 30.0 bits (66), Expect = 4.8 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GH+ +CP+ Sbjct: 411 CWKCGKSGHVMANCPE 426
>SYN_VIBPA (Q87NH5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>SYN_PHOPR (Q6LPQ6) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>SYN_PHOLL (Q7N622) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAALDVLAPGIGEIIGGSQ 395
>SYN_ERWCT (Q6D453) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 466 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 362 DIKAFYMRMNDDGKTVAAMDVLAPGIGEIIGGSQ 395
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GHI +CP+ Sbjct: 411 CWKCGKPGHIMANCPE 426
>RPOB_SYNEL (Q8DL55) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1108 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Frame = -2 Query: 266 VTSEALVRPSSPVMTSNSTTSFSLRLR*PSDLMADWWTKRSSLPS---SGEMKPNPLVTL 96 V +++ RP +P SF + +R L D +++S+PS GEMKP+P V L Sbjct: 1024 VKGQSIPRPGTP-------ESFKVLMRELQSLCLDISVRKASIPSFDDDGEMKPDPEVDL 1076
>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated| protein pp21; Protein p3; Protein p8; Protein n; Major core protein p27; Nucleic acid-binding protein p14] Length = 590 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+ CG+ GHI RDC + Sbjct: 526 CFSCGKTGHIKRDCKE 541
>GAG_HV2KR (Q74119) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 30.0 bits (66), Expect = 4.8 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GH+ +CP+ Sbjct: 411 CWKCGKSGHVMANCPE 426
>GAG_HV2BE (P18095) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 520 Score = 30.0 bits (66), Expect = 4.8 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+ GHI +CP+ Sbjct: 411 CWKCGKPGHIMANCPE 426
>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein| p10; Core phosphoprotein pp18; Core protein p12; Core protein p27; Core protein p14; Core protein p4] Length = 653 Score = 30.0 bits (66), Expect = 4.8 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+KCG++GH ++DC Sbjct: 545 CFKCGKKGHFAKDC 558
>SYK_STRP3 (Q8K880) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVGEDNYEIFKKADLGDFIGVEG 120 Query: 235 DDGRTKASDVT 267 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>SYK_STRP1 (Q9A0V7) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 497 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/71 (25%), Positives = 32/71 (45%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 R M R KG V GF + +G L+V + ++ D Y + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQLYVRKDSVGEDNYEIFKKADLGDFIGVEG 120 Query: 235 DDGRTKASDVT 267 + RT +++ Sbjct: 121 EVMRTDMGELS 131
>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11| Length = 1644 Score = 30.0 bits (66), Expect = 4.8 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+ CG+ GH+ R+CP+ Sbjct: 1359 CFICGDAGHVRRECPE 1374
>SYN_PASMU (Q9CN06) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 467 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 363 DIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQ 396
>SYN_HAEDU (Q7VLL7) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 467 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +1 Query: 205 DVVEFDVITGDDGRTKAS-DVTAPGGGALSGGSR 303 D+ F + DDG+T A+ DV APG G + GGS+ Sbjct: 363 DIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQ 396
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH++R C Q Sbjct: 387 CYNCGKPGHLARQCRQ 402
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH++R C Q Sbjct: 387 CYNCGKPGHLARQCRQ 402
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH++R C Q Sbjct: 387 CYNCGKPGHLARQCRQ 402
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core protein| p25; Core protein p14] Length = 442 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 CY CG+ GH++R C Q Sbjct: 387 CYNCGKPGHLARQCRQ 402
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 418 CWKCGKEGHQMKDCTE 433 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGH++R+C Sbjct: 397 CFNCGKEGHLARNC 410
>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1290 Score = 29.6 bits (65), Expect = 6.2 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = -2 Query: 239 SSPVMTSNSTTSFSLRLR*PSDLMADWWTKRSSLPSSGEMKPNPLVTLNHFTVPLTLA 66 SSPV S S P D AD W SS ++G +P+PL + +V +L+ Sbjct: 54 SSPVSPQESPKHESKSGLEPEDPSADEWKLSSSADTNGNAQPSPLAAKGYRSVHPSLS 111
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>COPIA_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains: Copia VLP| protein; Copia protease (EC 3.4.23.-)] Length = 1409 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG EGHI +DC Sbjct: 232 CHHCGREGHIKKDC 245
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 CY+CGE+GH + DC Sbjct: 135 CYECGEKGHYAYDC 148
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; Core protein| p25; Core protein p16] Length = 508 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGH++R+C Sbjct: 402 CFNCGKEGHLARNC 415
>SYK_STRMU (Q8DUW8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 496 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/71 (23%), Positives = 32/71 (45%) Frame = +1 Query: 55 RKMGARVKGTVKWFNVTKGFGFISPEDGSEDLFVHQSAIKSDGYRSLNENDVVEFDVITG 234 R M R KG V GF + +G ++V + + D Y+ + D+ +F + G Sbjct: 68 RLMTKRGKGKV-------GFAHLQDREGQIQIYVRKDTVGDDNYQIFKKADIGDFLGVEG 120 Query: 235 DDGRTKASDVT 267 + RT +++ Sbjct: 121 EIMRTDMGELS 131
>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 492 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 406 CWKCGKEGHQMKDCTE 421
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 418 CWKCGKEGHQMKDCTE 433 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGH++R+C Sbjct: 397 CFNCGKEGHLARNC 410
>POL_HV1Y2 (P35963) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1N5 (P12497) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1440 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 415 CWKCGKEGHQMKDCTE 430 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 394 CFNCGKEGHIAKNC 407
>GAG_HV1PV (P03350) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>GAG_HV1MN (P05888) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 506 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 415 CWKCGKEGHQMKDCTE 430 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 394 CFNCGKEGHIAKNC 407
>GAG_HV1B1 (P03347) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 511 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 406 CWKCGKEGHQMKDCTE 421
>GAK5_HUMAN (P62684) HERV-K_19p13.11 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K113 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK4_HUMAN (P63126) HERV-K_6q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K109 Gag protein) (HERV-K(C6) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK2_HUMAN (Q7LDI9) HERV-K_7p22.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(HML-2.HOM) Gag protein) (HERV-K108 Gag protein) (HERV-K(C7) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK1_HUMAN (P62683) HERV-K_12q14.1 provirus ancestral Gag polyprotein (Gag| polyprotein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK12_HUMAN (P63130) HERV-K_1q22 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K102 Gag protein) (HERV-K(III) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK11_HUMAN (P63145) HERV-K_22q11.21 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K101 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>GAG_HV1Y2 (P35962) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>GAG_HV1N5 (P12493) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427 Score = 29.3 bits (64), Expect = 8.1 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGHI+++C Sbjct: 391 CFNCGKEGHIAKNC 404
>GAG_HV1J3 (P12494) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGH++R+C Sbjct: 391 CFNCGKEGHLARNC 404 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>GAG_HV1H2 (P04591) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 499 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 469 CYKCGEEGHISRDCPQ 516 C+KCG+EGH +DC + Sbjct: 412 CWKCGKEGHQMKDCTE 427
>FTZF1_DROME (P33244) Nuclear hormone receptor FTZ-F1 (FTZ-F1 alpha)| Length = 1027 Score = 29.6 bits (65), Expect = 6.2 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +1 Query: 163 SAIKSDGYRSLNENDVVEFDVITG-DDGRTKASDVTAPGGGALSGGSRPS 309 +++ + + S +++F+V G DDG + T PG G+ SG S Sbjct: 246 TSVSTSNFLSSTTAQLLDFEVQVGKDDGHISTTTTTGPGSGSASGSGSGS 295
>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG+ GHI +CP Sbjct: 410 CWKCGKSGHIMANCP 424
>GAK6_HUMAN (P62685) HERV-K_8p23.1 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K115 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 646 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/15 (53%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 CY CG+ GH+ ++CP Sbjct: 545 CYNCGQIGHLKKNCP 559
>POL_HV1J3 (P12498) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR)] (Fragment) Length = 531 Score = 29.6 bits (65), Expect = 6.2 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+ CG+EGH++R+C Sbjct: 391 CFNCGKEGHLARNC 404 Score = 29.3 bits (64), Expect = 8.1 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 469 CYKCGEEGHISRDC 510 C+KCG+EGH +DC Sbjct: 412 CWKCGKEGHQMKDC 425
>MYO1B_HUMAN (O43795) Myosin Ib (Myosin I alpha) (MMI-alpha) (MMIa) (MYH-1c)| Length = 1136 Score = 29.6 bits (65), Expect = 6.2 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 9/93 (9%) Frame = +1 Query: 43 RFRRRKMGARVKGTVKWFNVTKGFGFISPEDGSE-------DLFVHQSAIKSDGYRSLNE 201 RF ++ + V N + SPE E +L H A+ + YRSL + Sbjct: 38 RFDHSEIYTYIGSVVISVNPYRSLPIYSPEKVEEYRNRNFYELSPHIFALSDEAYRSLRD 97 Query: 202 NDVVEFDVITGDD--GRTKASDVTAPGGGALSG 294 D + +ITG+ G+T+AS + A+ G Sbjct: 98 QDKDQCILITGESGAGKTEASKLVMSYVAAVCG 130
>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 519 Score = 29.6 bits (65), Expect = 6.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +1 Query: 469 CYKCGEEGHISRDCP 513 C+KCG+ GHI +CP Sbjct: 410 CWKCGKSGHIMANCP 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,707,649 Number of Sequences: 219361 Number of extensions: 586332 Number of successful extensions: 3091 Number of sequences better than 10.0: 277 Number of HSP's better than 10.0 without gapping: 2781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3041 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
