Clone Name | bart49c11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 22636 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 22695 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 22696 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 22755 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22756 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 22815 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 22816 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 22871
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 1983875 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 1983934 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 1983935 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 1983994 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1983995 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 1984054 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 1984055 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 1984110 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 114 ctccgccgaccaggtgcccgccttcgtc 141 ||||||||||||||| |||| ||||||| Sbjct: 33939093 ctccgccgaccaggtccccgacttcgtc 33939066
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 1983887 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 1983946 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 1983947 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 1984006 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984007 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 1984066 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 1984067 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 1984122 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 114 ctccgccgaccaggtgcccgccttcgtc 141 ||||||||||||||| |||| ||||||| Sbjct: 34029565 ctccgccgaccaggtccccgacttcgtc 34029538
>dbj|AK121681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070A11, full insert sequence Length = 1738 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 192 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 251 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 252 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 311 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 371 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 372 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 427
>dbj|AK060887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B06, full insert sequence Length = 1585 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 193 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 252 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 253 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 312 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 372 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 373 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 428
>gb|AF042333.1|AF042333 Oryza sativa 24-methylene lophenol C24(1)methyltransferase mRNA, complete cds Length = 1542 Score = 293 bits (148), Expect = 1e-76 Identities = 212/236 (89%) Strand = Plus / Plus Query: 1 aagcgggcggtggatctcaagatgggatccatcacgcgggacaaggtgcaggacaagtac 60 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 205 aagcgggcggtggatctcaagatgggatccatcacgaacgacaaggtgaaggacaagtac 264 Query: 61 acgcagtactggtccttcttccgnnnnnnnnaggagacggccaccacgcaggcctccgcc 120 |||||||||||||| |||||||| |||||||||| ||||| ||||||||||| Sbjct: 265 acgcagtactggtcgttcttccgccgccccaaggagacggcgaccaccgaggcctccgcc 324 Query: 121 gaccaggtgcccgccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 180 || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gagaaggtgccggccttcgtcgacaccttctacaacctcgtcaccgacatctacgagtgg 384 Query: 181 ggctggggccagtccttccacttctcgccctccctccccggccgctcccaccgcga 236 || ||||| ||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct: 385 ggttggggtcagtcgttccacttctccccttccctccccggccgctcccaccgcga 440
>gb|BT017486.1| Zea mays clone EL01N0412G05.c mRNA sequence Length = 1255 Score = 236 bits (119), Expect = 3e-59 Identities = 180/203 (88%) Strand = Plus / Plus Query: 38 gggacaaggtgcaggacaagtacacgcagtactggtccttcttccgnnnnnnnnaggaga 97 ||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 10 gggacaaggtgcaggacaagtacacccagtactggtccttcttccgccggcccaaggaga 69 Query: 98 cggccaccacgcaggcctccgccgaccaggtgcccgccttcgtcgacaccttctacaacc 157 ||||||||||| ||| || || || ||||||| |||||||| |||||||||||||||| Sbjct: 70 cggccaccacggcggcgtcggcggagaaggtgccggccttcgtggacaccttctacaacc 129 Query: 158 tcgtcaccgacatctacgagtggggctggggccagtccttccacttctcgccctccctcc 217 | || || |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 130 tggtgacggacatctacgagtggggctggggccagtccttccacttctcgccgtccctgc 189 Query: 218 ccggccgctcccaccgcgacgcc 240 ||||||||||||||||||||||| Sbjct: 190 ccggccgctcccaccgcgacgcc 212
>ref|NM_101884.2| Arabidopsis thaliana SMT2 (STEROL METHYLTRANSFERASE 2) AT1G20330 (SMT2) mRNA, complete cds Length = 1470 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 322 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 381 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 382 cttccacttctc 393
>gb|BT000750.1| Arabidopsis thaliana clone RAFL09-74-F07 (R19368) putative sterol-C-methyltransferase (At1g20330) mRNA, complete cds Length = 1412 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 273 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 332 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 333 cttccacttctc 344
>gb|AF332417.1| Arabidopsis thaliana putative sterol-C-methyltransferase (At1g20330) mRNA, complete cds Length = 1086 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 216 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 275 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 276 cttccacttctc 287
>gb|AY113961.1| Arabidopsis thaliana putative sterol-C-methyltransferase (At1g20330) mRNA, complete cds Length = 1117 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 216 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 275 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 276 cttccacttctc 287
>gb|AY046042.1| Arabidopsis thaliana putative sterol-C-methyltransferase (At1g20330) mRNA, complete cds Length = 1433 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 287 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 346 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 347 cttccacttctc 358
>gb|AY128389.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At1g20330) mRNA, complete cds Length = 1315 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 306 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 365 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 366 cttccacttctc 377
>emb|BX815314.1|CNS0AEG7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS51ZB08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1142 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 221 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 280 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 281 cttccacttctc 292
>emb|BX817173.1|CNS0AD6W Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZB12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1332 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 290 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 349 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 350 cttccacttctc 361
>emb|BX815494.1|CNS0ACVZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS66ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1362 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 242 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 301 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 302 cttccacttctc 313
>emb|BX815399.1|CNS0ACS8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS57ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 269 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 328 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 329 cttccacttctc 340
>emb|BX814372.1|CNS0AARG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 282 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 341 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 342 cttccacttctc 353
>gb|AY086699.1| Arabidopsis thaliana clone 2688 mRNA, complete sequence Length = 1469 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 322 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 381 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 382 cttccacttctc 393
>gb|AC026234.4|F14O10 Sequence of BAC F14O10 from Arabidopsis thaliana chromosome 1, complete sequence Length = 53889 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 25788 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 25847 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 25848 cttccacttctc 25859
>emb|X89867.1|ATSTERMET A.thaliana mRNA for sterol-C-methyltransferase Length = 1421 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 258 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 317 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 318 cttccacttctc 329
>gb|BT002093.1| Arabidopsis thaliana 24-sterol C-methyltransferase (At1g20330) mRNA, complete cds Length = 1123 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| |||||||||||||| ||||||||||| ||||| || || Sbjct: 216 cttcgtcgacacattctacaatctcgtcaccgacatatacgagtggggatggggacaatc 275 Query: 195 cttccacttctc 206 |||||||||||| Sbjct: 276 cttccacttctc 287
>ref|NM_106258.3| Arabidopsis thaliana SMT3; S-adenosylmethionine-dependent methyltransferase AT1G76090 (SMT3) mRNA, complete cds Length = 1373 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 326 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 385 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 386 tttccatttctc 397
>ref|XM_366350.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG10568.4) partial mRNA Length = 1143 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 166 gacatctacgagtggggctggggccagtccttccacttct 205 ||||||||||||| ||||||||||||||||||||||||| Sbjct: 265 gacatctacgagtacggctggggccagtccttccacttct 304
>gb|AY113031.1| Arabidopsis thaliana At1g76090/T23E18_40 mRNA, complete cds Length = 1080 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 216 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 275 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 276 tttccatttctc 287
>gb|AF375397.1| Arabidopsis thaliana At1g76090/T23E18_40 mRNA, complete cds Length = 1302 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 271 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 330 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 331 tttccatttctc 342
>emb|BX816099.1|CNS0AEHI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH27ZG09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1202 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 244 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 303 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 304 tttccatttctc 315
>emb|BX814807.1|CNS0ADN4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB95ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1301 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 260 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 319 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 320 tttccatttctc 331
>emb|BX815418.1|CNS0ACX8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS59ZG08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1320 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 305 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 364 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 365 tttccatttctc 376
>emb|BX820027.1|CNS0A8GR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1280 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 923 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 864 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 863 tttccatttctc 852
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence Length = 97554 Score = 63.9 bits (32), Expect = 2e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| || || Sbjct: 7634 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatggggacaatc 7575 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 7574 tttccatttctc 7563
>emb|BX816701.1|CNS0AD1H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZH11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 974 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctgggg 188 |||||||||||| |||||||| || ||||| || |||||||||||||| ||||| Sbjct: 27 cttcgtcgacacgttctacaatcttgtcactgatatctacgagtggggatgggg 80
>ref|XM_960299.1| Neurospora crassa OR74A probable DELTA(24)-STEROL C-METHYLTRANSFERASE [MIPS] (NCU03006.1) partial mRNA Length = 1140 Score = 56.0 bits (28), Expect = 5e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 150 ctacaacctcgtcaccgacatctacgagtggggctggggccagtccttccacttct 205 ||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||| Sbjct: 246 ctacaacctcgcgaccgatatttacgagtatggctggggccagtgcttccacttct 301
>ref|XM_330192.1| Neurospora crassa OR74A probable DELTA(24)-STEROL C-METHYLTRANSFERASE [MIPS] (NCU03006.1) partial mRNA Length = 1140 Score = 56.0 bits (28), Expect = 5e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 150 ctacaacctcgtcaccgacatctacgagtggggctggggccagtccttccacttct 205 ||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||| Sbjct: 246 ctacaacctcgcgaccgatatttacgagtatggctggggccagtgcttccacttct 301
>emb|AL389890.1|NCB24P7 Neurospora crassa DNA linkage group I BAC clone B24P7 Length = 77715 Score = 56.0 bits (28), Expect = 5e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 150 ctacaacctcgtcaccgacatctacgagtggggctggggccagtccttccacttct 205 ||||||||||| ||||| || ||||||| ||||||||||||| ||||||||||| Sbjct: 44850 ctacaacctcgcgaccgatatttacgagtatggctggggccagtgcttccacttct 44795
>gb|U71400.1|ATU71400 Arabidopsis thaliana S-adenosyl-methionine-sterol-C-methyltransferase mRNA, complete cds Length = 1249 Score = 56.0 bits (28), Expect = 5e-05 Identities = 61/72 (84%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttctacaacctcgtcaccgacatctacgagtggggctggggccagtc 194 |||||||||||| |||||||| || ||||| || | |||||||||||| ||||| || || Sbjct: 234 cttcgtcgacacgttctacaatcttgtcactgatacctacgagtggggatggggacaatc 293 Query: 195 cttccacttctc 206 ||||| ||||| Sbjct: 294 tttccatttctc 305
>emb|Z83321.1|ATZ83321 A.thaliana 16 kb chromosome 1 DNA fragment Length = 16202 Score = 50.1 bits (25), Expect = 0.003 Identities = 62/73 (84%), Gaps = 1/73 (1%) Strand = Plus / Plus Query: 135 cttcgtcgacaccttct-acaacctcgtcaccgacatctacgagtggggctggggccagt 193 |||||||||||| |||| |||| || ||||| || |||||||||||||| ||||| || | Sbjct: 11667 cttcgtcgacacgttctcacaatcttgtcactgatatctacgagtggggatggggacaat 11726 Query: 194 ccttccacttctc 206 | ||||| ||||| Sbjct: 11727 ctttccatttctc 11739
>ref|XM_978832.1| PREDICTED: Mus musculus RIKEN cDNA A530058N18 gene (A530058N18Rik), mRNA Length = 1658 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 cctccgccgaccaggtgcccgc 134 |||||||||||||||||||||| Sbjct: 240 cctccgccgaccaggtgcccgc 219
>ref|XM_898165.2| PREDICTED: Mus musculus RIKEN cDNA A530058N18 gene (A530058N18Rik), mRNA Length = 1658 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 cctccgccgaccaggtgcccgc 134 |||||||||||||||||||||| Sbjct: 240 cctccgccgaccaggtgcccgc 219
>ref|XM_924816.2| PREDICTED: Mus musculus RIKEN cDNA A530058N18 gene (A530058N18Rik), mRNA Length = 1659 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 cctccgccgaccaggtgcccgc 134 |||||||||||||||||||||| Sbjct: 240 cctccgccgaccaggtgcccgc 219
>ref|XM_382959.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02783.1) partial mRNA Length = 1146 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 184 tggggccagtccttccacttct 205 |||||||||||||||||||||| Sbjct: 286 tggggccagtccttccacttct 307
>ref|XM_470101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 633 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 ctccgccgaccaggtgcccgccttcgtc 141 ||||||||||||||| |||| ||||||| Sbjct: 453 ctccgccgaccaggtccccgacttcgtc 480
>ref|XM_466535.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1746 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cgacatctacgagtggggct 184 |||||||||||||||||||| Sbjct: 28 cgacatctacgagtggggct 47
>gb|AC117663.13| Mus musculus chromosome 5, clone RP23-354E8, complete sequence Length = 197426 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cgccctccctccccggccgc 225 |||||||||||||||||||| Sbjct: 132905 cgccctccctccccggccgc 132886
>gb|AC087728.3| Papio anubis clone RP41-340H23, complete sequence Length = 198888 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 acgagtggggctggggccag 192 |||||||||||||||||||| Sbjct: 118687 acgagtggggctggggccag 118706
>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence Length = 204267 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ggctggggccagtccttcca 200 |||||||||||||||||||| Sbjct: 148895 ggctggggccagtccttcca 148914
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete sequence Length = 176947 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 gggctggggccagtccttcc 199 |||||||||||||||||||| Sbjct: 142137 gggctggggccagtccttcc 142156
>emb|AL353711.13| Human DNA sequence from clone RP11-187K14 on chromosome 9, complete sequence Length = 79351 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tctacgagtggggctggggc 189 |||||||||||||||||||| Sbjct: 18869 tctacgagtggggctggggc 18850
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ctccccggccgctcccaccg 233 |||||||||||||||||||| Sbjct: 295000 ctccccggccgctcccaccg 295019
>gb|AC067931.16| Homo sapiens chromosome 8, clone RP11-642A1, complete sequence Length = 206466 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 99 ggccaccacgcaggcctccgccgaccag 126 ||||||||| ||||||||||||| |||| Sbjct: 54675 ggccaccactcaggcctccgccgcccag 54702
>ref|XM_393896.2| PREDICTED: Apis mellifera similar to Atf2 protein (LOC410416), mRNA Length = 7218 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tgcccgccttcgtcgacacc 147 |||||||||||||||||||| Sbjct: 2686 tgcccgccttcgtcgacacc 2667
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cgacatctacgagtggggct 184 |||||||||||||||||||| Sbjct: 23173995 cgacatctacgagtggggct 23173976
>gb|AC114769.3| Homo sapiens BAC clone RP11-405K16 from 2, complete sequence Length = 46514 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 168 catctacgagtggggctggggcca 191 ||||| |||||||||||||||||| Sbjct: 33692 catctccgagtggggctggggcca 33669
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 ctccgccgaccaggtgcccgccttcgtc 141 ||||||||||||||| |||| ||||||| Sbjct: 118598 ctccgccgaccaggtccccgacttcgtc 118625
>dbj|AP004092.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1568_B05 Length = 115325 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cgacatctacgagtggggct 184 |||||||||||||||||||| Sbjct: 31226 cgacatctacgagtggggct 31207
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cggccgctcccaccgcgacg 238 |||||||||||||||||||| Sbjct: 32459 cggccgctcccaccgcgacg 32478
>dbj|AK109775.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-B04, full insert sequence Length = 1746 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cgacatctacgagtggggct 184 |||||||||||||||||||| Sbjct: 28 cgacatctacgagtggggct 47
>dbj|AK107781.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-C07, full insert sequence Length = 879 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 ctccgccgaccaggtgcccgccttcgtc 141 ||||||||||||||| |||| ||||||| Sbjct: 500 ctccgccgaccaggtccccgacttcgtc 527
>gb|AF147749.1|AF147749 Streptomyces griseus dnaK pseudogene, complete sequence; putative antibiotic production activating factor gene, complete cds; and unknown gene Length = 4308 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ccccggccgctcccaccgcg 235 |||||||||||||||||||| Sbjct: 2983 ccccggccgctcccaccgcg 2964
>gb|AC117614.12| Mus musculus chromosome 5, clone RP23-110C17, complete sequence Length = 222809 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cgccctccctccccggccgc 225 |||||||||||||||||||| Sbjct: 217346 cgccctccctccccggccgc 217365
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 cgcaggcctccgccgaccag 126 |||||||||||||||||||| Sbjct: 3400496 cgcaggcctccgccgaccag 3400477
>emb|X00503.1|BTHOR02 Bovine prepro arginine vasopressin-neurophysin II gene Length = 2427 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ctccctccccggccgctccc 229 |||||||||||||||||||| Sbjct: 1663 ctccctccccggccgctccc 1682
>emb|X00502.1|BTHOR01 Bovine prepro-oxytocin-neurophysin I gene Length = 1167 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ctccctccccggccgctccc 229 |||||||||||||||||||| Sbjct: 617 ctccctccccggccgctccc 636
>dbj|AP000902.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-692N5, complete sequences Length = 186626 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 cgccctccctccccggccgctccc 229 ||||| |||||||||||||||||| Sbjct: 12363 cgcccgccctccccggccgctccc 12386 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,701,647 Number of Sequences: 3902068 Number of extensions: 1701647 Number of successful extensions: 31365 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31154 Number of HSP's gapped (non-prelim): 211 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)