Clone Name | bart49b06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 60.0 bits (30), Expect = 8e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Minus Query: 14 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 68 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 26085845 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 26085788 Query: 69 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 123 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 26085787 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 26085728 Query: 124 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 164 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 26085727 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 26085683 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 aacccggcggcgatgaggagg 76 ||||||||||||||||||||| Sbjct: 20001243 aacccggcggcgatgaggagg 20001223
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02 Length = 151636 Score = 60.0 bits (30), Expect = 8e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Minus Query: 14 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 68 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 65090 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 65033 Query: 69 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 123 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 65032 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 64973 Query: 124 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 164 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 64972 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 64928
>dbj|AK120334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I04, full insert sequence Length = 4436 Score = 60.0 bits (30), Expect = 8e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 14 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 68 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 96 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 153 Query: 69 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 123 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 154 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 213 Query: 124 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 164 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 214 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 258
>dbj|AK109473.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A12, full insert sequence Length = 1258 Score = 60.0 bits (30), Expect = 8e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 14 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 68 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 100 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 157 Query: 69 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 123 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 158 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 217 Query: 124 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 164 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 218 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 262
>dbj|AK072681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138J06, full insert sequence Length = 1224 Score = 60.0 bits (30), Expect = 8e-06 Identities = 136/165 (82%), Gaps = 16/165 (9%) Strand = Plus / Plus Query: 14 ggccgatgaccgcaccaccaga----gaccgcggcca-ctcggaaaaaacccggcggcga 68 ||||||||||||||||||| || ||||||||||| ||||| || | |||||||||| Sbjct: 99 ggccgatgaccgcaccacccgatcgagaccgcggccatctcgggaaca--ccggcggcga 156 Query: 69 tgaggaggccc-ggcccttggcgcacacctgttctcccgagcggcggcagcg----tcgg 123 ||||||||||| |||||||||||| || || ||||||||||||| ||| |||| Sbjct: 157 tgaggaggccccggcccttggcgcggacgcgtctccccgagcggcggccgcgcgcgtcgg 216 Query: 124 atccctccgcct-cgcggggccagccctccc---gtccgcgccgc 164 | |||||||||| |||||||||| ||||||| ||||||||||| Sbjct: 217 aaccctccgccttcgcggggccatccctccccccgtccgcgccgc 261
>gb|AC092717.2| Drosophila melanogaster, chromosome 2L, region 36D-36E, BAC clone BACR05N10, complete sequence Length = 169600 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 376 ccacctctctccctctcgcccgctcgcattgcg 408 ||||||||||||||||||| ||||||| ||||| Sbjct: 99064 ccacctctctccctctcgcacgctcgctttgcg 99096
>gb|AC007173.6|AC007173 Drosophila melanogaster, chromosome 2L, region 36E-, BAC clone BACR01A03, complete sequence Length = 155254 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 376 ccacctctctccctctcgcccgctcgcattgcg 408 ||||||||||||||||||| ||||||| ||||| Sbjct: 72150 ccacctctctccctctcgcacgctcgctttgcg 72182
>gb|AE003658.3| Drosophila melanogaster chromosome 2L, section 67 of 83 of the complete sequence Length = 262745 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 376 ccacctctctccctctcgcccgctcgcattgcg 408 ||||||||||||||||||| ||||||| ||||| Sbjct: 172799 ccacctctctccctctcgcacgctcgctttgcg 172831
>gb|DQ121187.1| Bos taurus isolate 25_26+_+C12.1 MHC class I antigen (BoLA) gene, partial cds Length = 1121 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 agatctgagccgccgtctccac 334 |||||||||||||||||||||| Sbjct: 491 agatctgagccgccgtctccac 470
>gb|AY188799.1| Bos indicus F187.1 MHC class I antigen mRNA, partial cds Length = 1070 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 313 agatctgagccgccgtctccac 334 |||||||||||||||||||||| Sbjct: 477 agatctgagccgccgtctccac 456
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 156 ccgcgccgcgccgcgacgccgg 177 |||||||||||||||||||||| Sbjct: 389932 ccgcgccgcgccgcgacgccgg 389953
>gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosome unknown, complete sequence Length = 190789 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 tacctccacccctcaccacctc 382 |||||||||||||||||||||| Sbjct: 173429 tacctccacccctcaccacctc 173450
>emb|AL691461.22| Mouse DNA sequence from clone RP23-162E10 on chromosome 11, complete sequence Length = 150034 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 373 tcaccacctctctccctctcgc 394 |||||||||||||||||||||| Sbjct: 70341 tcaccacctctctccctctcgc 70320
>gb|AC154901.1| Prunus persica (peach) BAC clone 82I18, complete sequence Length = 73299 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 ctcaccacctctctccctctc 392 ||||||||||||||||||||| Sbjct: 26973 ctcaccacctctctccctctc 26993
>gb|DQ397869.1| Cenarchaeum symbiosum clone C04C05, complete sequence Length = 40287 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cgcccgccgtggccgatgacc 24 ||||||||||||||||||||| Sbjct: 31437 cgcccgccgtggccgatgacc 31457
>gb|DQ397578.1| Cenarchaeum symbiosum clone C13F12, complete sequence Length = 39464 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 cgcccgccgtggccgatgacc 24 ||||||||||||||||||||| Sbjct: 1165 cgcccgccgtggccgatgacc 1145
>gb|AC025262.27|AC025262 Homo sapiens 12 BAC RP11-629N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167276 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 cctcaccacctctctccctct 391 ||||||||||||||||||||| Sbjct: 81144 cctcaccacctctctccctct 81164
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ccgcgccgcgccgcgacgccg 176 ||||||||||||||||||||| Sbjct: 16123897 ccgcgccgcgccgcgacgccg 16123917
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 aacccggcggcgatgaggagg 76 ||||||||||||||||||||| Sbjct: 139583 aacccggcggcgatgaggagg 139563
>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105 Length = 340000 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 cggcgatgaggaggcccggcccttg 87 |||| |||||||||||||||||||| Sbjct: 213819 cggcaatgaggaggcccggcccttg 213795
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ccgcgccgcgccgcgacgccg 176 ||||||||||||||||||||| Sbjct: 16213919 ccgcgccgcgccgcgacgccg 16213939
>dbj|AP000163.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 15/16, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 cggcgatgaggaggcccggcccttg 87 |||| |||||||||||||||||||| Sbjct: 236 cggcaatgaggaggcccggcccttg 212
>dbj|AP000021.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 12/13 Length = 100000 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 cggcgatgaggaggcccggcccttg 87 |||| |||||||||||||||||||| Sbjct: 34632 cggcaatgaggaggcccggcccttg 34608
>dbj|AP001422.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S166, LB7T-ERG region, complete sequence Length = 83533 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 63 cggcgatgaggaggcccggcccttg 87 |||| |||||||||||||||||||| Sbjct: 51652 cggcaatgaggaggcccggcccttg 51628
>ref|NM_001034818.1| Gallus gallus lin-28 homolog B (C. elegans) (LIN28B), mRNA Length = 1312 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctcgtgctccggcagccgcc 211 |||||||||||||||||||| Sbjct: 219 ctcgtgctccggcagccgcc 200
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgcgccgcgccgcgacgccg 176 |||||||||||||||||||| Sbjct: 63124 cgcgccgcgccgcgacgccg 63143
>gb|AC152062.6| Mus musculus BAC clone RP23-341K9 from chromosome 10, complete sequence Length = 240781 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tccgcccgccgtggccgatg 21 |||||||||||||||||||| Sbjct: 37873 tccgcccgccgtggccgatg 37854
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 197 gctccggcagccgccgcggcttcgccggcgtc 228 ||||| |||||||| ||||| ||||||||||| Sbjct: 708050 gctcctgcagccgcggcggcatcgccggcgtc 708081
>gb|AC136976.5| Mus musculus BAC clone RP23-362K12 from chromosome 13, complete sequence Length = 147695 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 cccctcaccacctctctccctctc 392 |||||| ||||||||||||||||| Sbjct: 13905 cccctctccacctctctccctctc 13882
>gb|AC137680.10| Mus musculus chromosome 13, clone RP23-454P19, complete sequence Length = 197663 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 cccctcaccacctctctccctctc 392 |||||| ||||||||||||||||| Sbjct: 131198 cccctctccacctctctccctctc 131175
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 197 gctccggcagccgccgcggcttcgccggcgtc 228 ||||| |||||||| ||||| ||||||||||| Sbjct: 1230927 gctcctgcagccgcggcggcatcgccggcgtc 1230958
>ref|NM_013595.1| Mus musculus methyl-CpG binding domain protein 3 (Mbd3), mRNA Length = 1589 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tccgcccgccgtggccgatg 21 |||||||||||||||||||| Sbjct: 234 tccgcccgccgtggccgatg 215
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 tgctcgtgctccggcagccgccgc 213 ||||| |||||||||||||||||| Sbjct: 4844830 tgctcctgctccggcagccgccgc 4844853
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgcgccgcgccgcgacgccg 176 |||||||||||||||||||| Sbjct: 5705 cgcgccgcgccgcgacgccg 5724
>gb|BC038264.1| Mus musculus methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:46876 IMAGE:5250237), complete cds Length = 1405 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tccgcccgccgtggccgatg 21 |||||||||||||||||||| Sbjct: 131 tccgcccgccgtggccgatg 112
>ref|XM_535007.2| PREDICTED: Canis familiaris similar to glutathione-S-transferase omega 1, transcript variant 1 (LOC477813), mRNA Length = 857 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ccgtccgcgccgcgccgcga 171 |||||||||||||||||||| Sbjct: 22 ccgtccgcgccgcgccgcga 41
>ref|XM_858871.1| PREDICTED: Canis familiaris similar to glutathione-S-transferase omega 1, transcript variant 3 (LOC477813), mRNA Length = 662 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ccgtccgcgccgcgccgcga 171 |||||||||||||||||||| Sbjct: 17 ccgtccgcgccgcgccgcga 36
>ref|XM_536802.2| PREDICTED: Canis familiaris similar to 26S proteasome non-ATPase regulatory subunit 7 (26S proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein), transcript variant 1 (LOC479671), mRNA Length = 1547 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ctccggcagccgccgcggct 217 |||||||||||||||||||| Sbjct: 25 ctccggcagccgccgcggct 6
>gb|AY844348.1| Scinax nasicus 28S ribosomal RNA gene, partial sequence Length = 761 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ggccagccctcccgtccgcg 160 |||||||||||||||||||| Sbjct: 199 ggccagccctcccgtccgcg 218
>gb|DQ127227.1| Gallus gallus LIN28B mRNA, complete cds Length = 1312 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctcgtgctccggcagccgcc 211 |||||||||||||||||||| Sbjct: 219 ctcgtgctccggcagccgcc 200
>emb|AL162499.20| Human DNA sequence from clone RP11-315H15 on chromosome 13 Contains part of a novel gene and a CpG island, complete sequence Length = 140907 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cctccacccctcaccacctctctccctc 390 |||||| ||||||||| ||||||||||| Sbjct: 108974 cctccagccctcaccatctctctccctc 109001
>emb|AL139324.19| Human DNA sequence from clone RP11-309I15 on chromosome 13 Contains part of a novel gene and a pseudogene similar to part of RAN binding protein 7 (RANBP7), complete sequence Length = 116131 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tggcgcacacctgttctccc 105 |||||||||||||||||||| Sbjct: 26244 tggcgcacacctgttctccc 26263
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ccgcgccgcgccgcgacgccggct 179 ||||||||||||||| |||||||| Sbjct: 312252 ccgcgccgcgccgcgccgccggct 312229
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 197 gctccggcagccgccgcggcttcgccggcgtc 228 ||||| |||||||| ||||| ||||||||||| Sbjct: 1133843 gctcctgcagccgcggcggcatcgccggcgtc 1133874
>emb|BX294148.1| Pirellula sp. strain 1 complete genome; segment 16/24 Length = 294850 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cgtggccgatgaccgcacca 30 |||||||||||||||||||| Sbjct: 237211 cgtggccgatgaccgcacca 237192
>emb|AL645965.8| Mouse DNA sequence from clone RP23-65I14 on chromosome 11 Contains the 5' end of the gene for a novel protein (330000P08Rik) (Luc7a), the gene for a novel protein (5530600A18Rik), the Abcc3 gene for ATP-binding cassette sub-family C (CFTR/MRP) member 3, the Cacna1g gene for calcium channel voltage-dependent T type alpha 1G subunit, the 3' end of the Tisp78 gene for transcript increased in spermiogenesis 78 and one CpG island, complete sequence Length = 161978 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gtcggatccctccgcctcgc 138 |||||||||||||||||||| Sbjct: 10172 gtcggatccctccgcctcgc 10191
>gb|AC023403.9| Homo sapiens chromosome 8, clone RP11-563N12, complete sequence Length = 193461 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 379 cctctctccctctcgcccgctcgc 402 |||||||||||||||||| ||||| Sbjct: 116406 cctctctccctctcgccctctcgc 116429
>gb|AC159623.3| Mus musculus BAC clone RP24-308O7 from chromosome 12, complete sequence Length = 165043 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 cccctcaccacctctctccctctc 392 |||||| ||||||||||||||||| Sbjct: 59856 cccctctccacctctctccctctc 59879
>gb|AC093101.1| Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone BACR06I01, complete sequence Length = 175167 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agccgccgtctccacttcgt 339 |||||||||||||||||||| Sbjct: 60985 agccgccgtctccacttcgt 61004
>gb|AC116407.18| Homo sapiens chromosome 17, clone CTD-2095E4, complete sequence Length = 104176 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 377 cacctctctccctctcgccc 396 |||||||||||||||||||| Sbjct: 7572 cacctctctccctctcgccc 7553
>gb|AC092234.1|AC092234 Drosophila melanogaster, chromosome 2L, region 29C-29D, BAC clone BACR02I15, complete sequence Length = 186490 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ctcggtttggtcggtcgctg 451 |||||||||||||||||||| Sbjct: 178474 ctcggtttggtcggtcgctg 178455
>emb|CR353371.1| Gallus gallus finished cDNA, clone ChEST26i18 Length = 1312 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ctcgtgctccggcagccgcc 211 |||||||||||||||||||| Sbjct: 219 ctcgtgctccggcagccgcc 200
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 tctggggaccgcgtggcaggggga 270 ||||||| |||||||||||||||| Sbjct: 11355001 tctgggggccgcgtggcaggggga 11354978
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 cccctcaccacctctctccctctc 392 ||||||||||||||||| |||||| Sbjct: 15205067 cccctcaccacctctcttcctctc 15205090
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgcgccgcgccgcgacgccg 176 |||||||||||||||||||| Sbjct: 20749900 cgcgccgcgccgcgacgccg 20749919
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 gccgccgcggcttcgccggcgtcg 229 ||||||||| |||||||||||||| Sbjct: 20398519 gccgccgcgacttcgccggcgtcg 20398496
>gb|AC008330.3|AC008330 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone BACR23B08, complete sequence Length = 161927 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ctcggtttggtcggtcgctg 451 |||||||||||||||||||| Sbjct: 91222 ctcggtttggtcggtcgctg 91203
>gb|AC007947.5|AC007947 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone BACR11O03, complete sequence Length = 168505 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 tgcgagcgtgtgtgtataagcgca 428 |||| ||||||||||||||||||| Sbjct: 75967 tgcgtgcgtgtgtgtataagcgca 75990
>gb|AC009364.9| Homo sapiens chromosome 7 clone RP11-348A15, complete sequence Length = 151153 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tcaccacctctctccctctc 392 |||||||||||||||||||| Sbjct: 80 tcaccacctctctccctctc 61
>gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 tcaccacctctctccctctc 392 |||||||||||||||||||| Sbjct: 134181 tcaccacctctctccctctc 134162
>dbj|AP004614.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0042P21 Length = 141230 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 gccgccgcggcttcgccggcgtcg 229 ||||||||| |||||||||||||| Sbjct: 54634 gccgccgcgacttcgccggcgtcg 54611
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 ctcccgtccgcgccgcgccg 168 |||||||||||||||||||| Sbjct: 2303091 ctcccgtccgcgccgcgccg 2303110
>gb|AC026620.17| Homo sapiens chromosome 17, clone RP11-443G13, complete sequence Length = 156300 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cacctctctccctctcgccc 396 |||||||||||||||||||| Sbjct: 43168 cacctctctccctctcgccc 43187
>dbj|AP004574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702G08 Length = 144596 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 cccctcaccacctctctccctctc 392 ||||||||||||||||| |||||| Sbjct: 52892 cccctcaccacctctcttcctctc 52915
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 gtcgctggttccagatctca 464 |||||||||||||||||||| Sbjct: 1407992 gtcgctggttccagatctca 1407973
>dbj|AP007202.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, fosmid clone:OSJNOa054B01 Length = 36624 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 247 tctggggaccgcgtggcaggggga 270 ||||||| |||||||||||||||| Sbjct: 25413 tctgggggccgcgtggcaggggga 25390
>dbj|AB097904.1| Streptomyces carzinostaticus DNA, biosynthetic gene cluster for antitumor antibiotic Neocarzilin, complete and partial cds Length = 33079 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ccgcgccgcgccgcgacgccggct 179 ||||||||| |||||||||||||| Sbjct: 9960 ccgcgccgccccgcgacgccggct 9983
>dbj|BS000128.1| Pan troglodytes chromosome 22 clone:RP43-001C14, map 22, complete sequences Length = 127477 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 atgaggaggcccggcccttg 87 |||||||||||||||||||| Sbjct: 40579 atgaggaggcccggcccttg 40560
>dbj|BS000159.1| Pan troglodytes chromosome 22 clone:PTB-042K04, map 22, complete sequences Length = 148367 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 atgaggaggcccggcccttg 87 |||||||||||||||||||| Sbjct: 20109 atgaggaggcccggcccttg 20090
>dbj|AK099814.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L01, full insert sequence Length = 1912 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgcgccgcgccgcgacgccg 176 |||||||||||||||||||| Sbjct: 46 cgcgccgcgccgcgacgccg 65
>gb|AF072248.1|AF072248 Mus musculus methyl-CpG binding domain-containing protein MBD3 (Mbd3) mRNA, complete cds Length = 1589 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tccgcccgccgtggccgatg 21 |||||||||||||||||||| Sbjct: 234 tccgcccgccgtggccgatg 215
>gb|AF120995.1|AF120995 Mus musculus domesticus methyl-CpG binding domain-containing protein 3 (Mbd3) gene, complete cds Length = 10325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tccgcccgccgtggccgatg 21 |||||||||||||||||||| Sbjct: 387 tccgcccgccgtggccgatg 368
>emb|CT025735.16| Mouse DNA sequence from clone RP24-338F19 on chromosome 12, complete sequence Length = 165439 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 cccctcaccacctctctccctctc 392 |||||| ||||||||||||||||| Sbjct: 26811 cccctctccacctctctccctctc 26788
>gb|AE003646.3| Drosophila melanogaster chromosome 2L, section 55 of 83 of the complete sequence Length = 265413 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 agccgccgtctccacttcgt 339 |||||||||||||||||||| Sbjct: 106038 agccgccgtctccacttcgt 106057
>gb|AE003621.3| Drosophila melanogaster chromosome 2L, section 30 of 83 of the complete sequence Length = 308031 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 ctcggtttggtcggtcgctg 451 |||||||||||||||||||| Sbjct: 194636 ctcggtttggtcggtcgctg 194617
>gb|AE003768.2| Drosophila melanogaster chromosome 3R, section 106 of 118 of the complete sequence Length = 243118 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 tgcgagcgtgtgtgtataagcgca 428 |||| ||||||||||||||||||| Sbjct: 6670 tgcgtgcgtgtgtgtataagcgca 6693
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 tgctcgtgctccggcagccgccgc 213 ||||||||||||||| |||||||| Sbjct: 132167 tgctcgtgctccggccgccgccgc 132190
>gb|AY679243.1| Cervus nippon MHC class I antigen (Ceni-A) gene, Ceni-A*0319 allele, exon 3 and partial cds Length = 226 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 agatctgagccgccgtctcc 332 |||||||||||||||||||| Sbjct: 157 agatctgagccgccgtctcc 138
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ccgccgcggcttcgccggcg 226 |||||||||||||||||||| Sbjct: 966933 ccgccgcggcttcgccggcg 966952 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,792,866 Number of Sequences: 3902068 Number of extensions: 3792866 Number of successful extensions: 111475 Number of sequences better than 10.0: 79 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109193 Number of HSP's gapped (non-prelim): 2271 length of query: 555 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 532 effective length of database: 17,143,297,704 effective search space: 9120234378528 effective search space used: 9120234378528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)