Clone Information

BLAST Search Result

Clone Name	bart49b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 p...	126	4e-29
2	ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)	37	0.045
3	ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)	37	0.045
4	TEGU_EBV (P03186) Large tegument protein	35	0.13
5	ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi...	35	0.22
6	ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)	35	0.22
7	AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathri...	33	0.65
8	UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	33	0.85
9	LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precu...	32	1.4
10	ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)	32	1.4
11	RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) ...	32	1.9
12	DCOA_KLEPN (P13187) Oxaloacetate decarboxylase alpha chain (EC 4...	32	1.9
13	SPEG_BRARE (Q696W0) Striated muscle preferentially expressed pro...	32	1.9
14	AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clath...	31	2.5
15	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	31	3.2
16	IF2_BRUME (Q8YEB3) Translation initiation factor IF-2	31	3.2
17	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	31	3.2
18	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	31	3.2
19	SMO_CHICK (O42224) Smoothened homolog precursor (SMO) (Fragment)	31	3.2
20	FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved ...	31	3.2
21	ENP2_RAT (O35795) Ectonucleoside triphosphate diphosphohydrolase...	30	4.2
22	CATA_CAVPO (Q64405) Catalase (EC 1.11.1.6)	30	4.2
23	IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2	30	4.2
24	Y1384_MYCBO (P63394) Hypothetical ABC transporter ATP-binding pr...	30	4.2
25	Y1349_MYCTU (P63393) Hypothetical ABC transporter ATP-binding pr...	30	4.2
26	IF2_XANCP (Q8P7U7) Translation initiation factor IF-2	30	4.2
27	CPN_DROME (Q02910) Calphotin	30	4.2
28	CDSN_PIG (O19084) Corneodesmosin (S protein) (Fragment)	30	4.2
29	MALM_ECOLI (P03841) Maltose operon periplasmic protein precursor	30	4.2
30	STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich prote...	30	5.5
31	TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox...	30	5.5
32	ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (...	30	5.5
33	NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified i...	30	5.5
34	LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alterna...	30	7.2
35	MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein	30	7.2
36	TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)	30	7.2
37	T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-relate...	30	7.2
38	GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein...	30	7.2
39	WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)	30	7.2
40	MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.1...	30	7.2
41	UPK3A_HUMAN (O75631) Uroplakin-3A precursor (Uroplakin III) (UPIII)	30	7.2
42	ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrola...	29	9.4
43	DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA	29	9.4
44	SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)	29	9.4
45	PICA_CAEEL (Q9XZI6) Phosphatidylinositol-binding clathrin assemb...	29	9.4
46	TRAC_RHISN (P55419) Probable conjugal transfer protein traC	29	9.4

>AIR12_ARATH (Q94BT2) Auxin-induced in root cultures protein 12 precursor|
          Length = 252

 Score =  126 bits (317), Expect = 4e-29
 Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
 Frame = +3

Query: 219 YAKCEDLPQLGAALHWTYDESKSSLSLAFVAAPAGANG-WVAWAPNPTGEGMAGAQALVA 395
           +  CEDLP L + LH+TY+ S SSLS+AFVA P+ ANG WVAWA NPTG  MAG+QA +A
Sbjct: 40  FDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLA 99

Query: 396 LKGSGAAAPTVRTYNITGYVPLGKASTPIAFPATDLAADSGSAGKIRLYGKLQLHSGMKA 575
            +  G AAP V+TYNI+ Y  L +    +AF   +L A+S S G+I ++  +++ +G  +
Sbjct: 100 YRSGGGAAPVVKTYNISSYSSLVEGK--LAFDFWNLRAESLSGGRIAIFTTVKVPAGADS 157

Query: 576 VNHIWQVGTSV 608
           VN +WQ+G +V
Sbjct: 158 VNQVWQIGGNV 168

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>ACON_CORGL (Q8NQ98) Aconitate hydratase (EC 4.2.1.3)|
          Length = 939

 Score = 37.0 bits (84), Expect = 0.045
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 360 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSGSAGK- 530
           G G+ G +A  A+ G   +   P V  + +TG +P+G  +T +    T++  D G   K 
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPVGVTATDVVLTITEMLRDHGVVQKF 277

Query: 531 IRLYGKLQLHSGMKAV 578
           +  YG     SG+KAV
Sbjct: 278 VEFYG-----SGVKAV 288

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>ACON_CORJK (Q4JVM4) Aconitate hydratase (EC 4.2.1.3)|
          Length = 936

 Score = 37.0 bits (84), Expect = 0.045
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 360 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSGSAGK- 530
           G G+ G +A  A+ G   +   P V  + +TG +P G  +T +    TD+    G  GK 
Sbjct: 218 GWGVGGIEAEAAMLGQPISMLIPRVVGFKLTGEIPTGVTATDVVLTITDMLRQHGVVGKF 277

Query: 531 IRLYGK 548
           +  YGK
Sbjct: 278 VEFYGK 283

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>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
 Frame = -1

Query: 556 SCSLP*SRILPAL----PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSAT 389
           S S P +R  PA     P S A +   +A    A P+   P      +   A+  P SA 
Sbjct: 315 SDSFPAARYSPAKTNSPPSSPASAAPASAAPASAAPASAAPASAAPASAAPASAAPASAA 374

Query: 388 SACAPAMPSPV-------GLGAQATHPLAPAGAATNASER 290
            A +P +  P+       G+ A +T P A +GAA    +R
Sbjct: 375 PASSPPLFIPIPGLGHTPGVPAPSTPPRASSGAAPQTPKR 414

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>ABI2_HUMAN (Q9NYB9) Abl interactor 2 (Abelson interactor 2) (Abi-2)|
           (Abl-binding protein 3) (AblBP3) (Arg-binding protein 1)
           (ArgBP1)
          Length = 513

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 24/78 (30%), Positives = 36/78 (46%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLG 347
           P+   S+  +    ++GV        P  ++    G+A   PL ATSA APA   P  + 
Sbjct: 252 PSSRSSSRENSGSGSVGVPIAVPTPSPPSVFPAPAGSAGTPPLPATSASAPAPLVPATV- 310

Query: 346 AQATHPLAPAGAATNASE 293
             +T P A AG A N ++
Sbjct: 311 PSSTAPNAAAGGAPNLAD 328

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>ACON_COREF (Q8FTA8) Aconitate hydratase (EC 4.2.1.3)|
          Length = 937

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 360 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSGSAGK- 530
           G G+ G +A  A+ G   +   P V  + +TG +P+G  +T +    T++  D G   K 
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPVGVTATDVVLTITEMLRDHGVVQKF 277

Query: 531 IRLYGKLQLHSGMKAV 578
           +  YG     +G+K+V
Sbjct: 278 VEFYG-----NGVKSV 288

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>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein)
          Length = 915

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPE-PLSATSACAPAMPSPVGL 350
           P+ P +     + +A    A+ + T  V L+     A+  E P ++  A APA P+PV  
Sbjct: 406 PSPPTTTTEPASASASATTAVTAATTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAA 465

Query: 349 GAQA---THPLAPAGAATNASERDDLDSS*VQCSAAPSCGRSSHLAYVFPA 206
              A     P AP+  +  A+   DL +     ++AP    ++  A   PA
Sbjct: 466 ALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETSAPVVTPTASTAPPVPA 516

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>UNG_PRVKA (P52507) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 316

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = -1

Query: 463 PSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAATNA 299
           P G  P +  V+   AAA    +AT+A A A   P G GA A+ P  P+ AA  A
Sbjct: 10  PCGLPPGVRLVVPAAAAASASNAATAAAAAA---PAGAGAGASKPARPSAAARPA 61

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>LSHB_EQUBU (O46641) Lutropin/choriogonadotropin beta chain precursor|
           (LSH-B/CG-B) (Lutenizing hormone beta subunit)
          Length = 169

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
 Frame = -1

Query: 604 EVPTCHIWLTAFMPLCSCSLP*S-RILPAL------PESAARSVAGNAMGVEALPSGT*P 446
           E   C I +T    +C+   P   R++PA       P    R +   ++ +   P G  P
Sbjct: 39  EKEACPICITFTTSICAGYCPSMVRVMPAALPPIPQPVCTYRELRFASIRLPGCPPGVDP 98

Query: 445 VMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAATNASERDDLDSS*V 266
           ++ +          P++ +  C P        G    HPLA A  A+++S+  D  S  +
Sbjct: 99  MVSF----------PVALSCHCGPCRLKTTDCGGPRDHPLACAPQASSSSK--DPPSQPL 146

Query: 265 QCSAAPSCGRSSHLAYVFP 209
             ++ P+ G S+  ++  P
Sbjct: 147 TSTSTPTPGASNRSSHPLP 165

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>ACON_CORDI (Q6NH63) Aconitate hydratase (EC 4.2.1.3)|
          Length = 934

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 360 GEGMAGAQALVALKGSGAAA--PTVRTYNITGYVPLGKASTPIAFPATDLAADSGSAGK- 530
           G G+ G +A  A+ G   +   P V  + +TG +P G  +T +    T++  + G   K 
Sbjct: 218 GWGVGGIEAEAAMLGQPVSMLIPRVVGFKLTGEIPAGVTATDVVLTITEMLREHGVVQKF 277

Query: 531 IRLYGKLQLHSGMKAV 578
           +  YG     +G+K++
Sbjct: 278 VEFYG-----NGVKSI 288

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>RA51B_HUMAN (O15315) DNA repair protein RAD51 homolog 2 (R51H2) (RAD51-like|
           protein 1) (Rad51B)
          Length = 384

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 385 ACAPAMPSPVGLGAQATHPLAPAGAATNASERDDLDSS*VQC------SAAPSCGRS 233
           ACAP M +  G+ AQ +   +PA  +T  S  D+     V C      +  P CG++
Sbjct: 59  ACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKT 115

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>DCOA_KLEPN (P13187) Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)|
          Length = 595

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/36 (50%), Positives = 19/36 (52%)
 Frame = -1

Query: 430 LTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLA 323
           LT  A AP P  A  A APA  +P G G   T PLA
Sbjct: 500 LTAAAPAPAPAPAP-ASAPAAAAPAGAGTPVTAPLA 534

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>SPEG_BRARE (Q696W0) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1)
          Length = 2995

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -1

Query: 448  PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAATNASERD 287
            PV  YV    + AP P+S +     ++ SP+G GA +  P  P G A ++++ +
Sbjct: 2618 PVPTYVPATCSLAPTPVSPSVIVVSSI-SPIGEGASSPTPETPTGQAVSSTKSE 2670

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>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin|
           coat-associated protein AP180) (91 kDa
           synaptosomal-associated protein) (Phosphoprotein F1-20)
          Length = 901

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPE-PLSATSACAPAMPSPVGL 350
           P+ P +     + +A    A+ + T  V L+     A+  E P ++  A APA P+PV  
Sbjct: 406 PSPPTTTTEPASASASTTTAVTAVTTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAA 465

Query: 349 GAQA---THPLAPAGAATNASERDDLDSS*VQCSAAPSCGRSSHLAYVFPA 206
              A     P AP+  +  A+   DL +     ++AP    ++  A   PA
Sbjct: 466 ALDACSGNDPFAPSEGSAEAAPELDLFAMKPPETSAPVVTPTASTAPPVPA 516

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS----- 362
           P +  +AA   A  A   +  P+   PV        A  P P+ A +  APA PS     
Sbjct: 59  PEVEAAAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTK 117

Query: 361 ------------PVGLGAQATHPLAPAGAATNASERDDLDS 275
                       P G  AQ   P   +G   N   R ++D+
Sbjct: 118 PHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2|
          Length = 959

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS----- 362
           P +  +AA   A  A   +  P+   PV        A  P P+ A +  APA PS     
Sbjct: 59  PEVEAAAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTK 117

Query: 361 ------------PVGLGAQATHPLAPAGAATNASERDDLDS 275
                       P G  AQ   P   +G   N   R ++D+
Sbjct: 118 PHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS----- 362
           P +  +AA   A  A   +  P+   PV        A  P P+ A +  APA PS     
Sbjct: 59  PEVEAAAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTK 117

Query: 361 ------------PVGLGAQATHPLAPAGAATNASERDDLDS 275
                       P G  AQ   P   +G   N   R ++D+
Sbjct: 118 PHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 17/101 (16%)
 Frame = -1

Query: 526 PALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPS----- 362
           P +  +AA   A  A   +  P+   PV        A  P P+ A +  APA PS     
Sbjct: 59  PEVEAAAAPKPAAPAAAPQQAPASA-PVSASAAQASAPQPAPVKAPATKAPAAPSAPVTK 117

Query: 361 ------------PVGLGAQATHPLAPAGAATNASERDDLDS 275
                       P G  AQ   P   +G   N   R ++D+
Sbjct: 118 PHVAQQRPVHQRPGGQQAQRPRPADRSGMVLNTLSRSEMDA 158

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>SMO_CHICK (O42224) Smoothened homolog precursor (SMO) (Fragment)|
          Length = 794

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +3

Query: 468 ASTPIAFPATDLAADSGSAGKIRLYGKLQLHSGMKAVNHIWQV 596
           ++ P A  +T LAADSGS  +   +GKL L SG++     W V
Sbjct: 51  SALPYAHTSTLLAADSGSQEEA--HGKLLLWSGLRNAPRCWDV 91

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>FA8A1_HUMAN (Q9UBU6) Protein FAM8A1 (Autosomal highly conserved protein)|
          Length = 413

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 40/141 (28%), Positives = 51/141 (36%), Gaps = 11/141 (7%)
 Frame = -1

Query: 595 TCHIWLTAFMPLCSCSLP*SRILPALPESAARSVAGNAMGVEALPSGT*PVM-----LYV 431
           T H  L AF   CS            P+ + +S       V    +   P +      Y 
Sbjct: 130 TWHSGLAAFPAYCS------------PQPSPQSFPSGGAAVPQAAAPPPPQLGYYNPFYF 177

Query: 430 LTVGAAAPEPLSATSACAPAMPSPV-GLGAQATHPLAPAGAATNASERDDLDSS*VQCSA 254
           L+ GAA P+P +A     PA   PV GLG +A H  A   A                 SA
Sbjct: 178 LSPGAAGPDPRTAAGISTPA---PVAGLGPRAPHVQASVRATPVTRVG----------SA 224

Query: 253 APS-----CGRSSHLAYVFPA 206
           APS      GR +   YV P+
Sbjct: 225 APSRSPSETGRQAGREYVIPS 245

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>ENP2_RAT (O35795) Ectonucleoside triphosphate diphosphohydrolase 2 (EC|
           3.6.1.-) (NTPDase2) (Ecto-ATPase) (CD39 antigen-like 1)
          Length = 495

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 447 GYVPLGKASTPIAFPATDLAADSGSAGKIRLYGK 548
           G + LG AST I F  T  + D G+   +RLYG+
Sbjct: 198 GAMDLGGASTQITFETTSPSEDPGNEVHLRLYGQ 231

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>CATA_CAVPO (Q64405) Catalase (EC 1.11.1.6)|
          Length = 526

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
 Frame = +3

Query: 381 QALVALKGSGAAAPTVRTYNITGYVP------LGKASTPIAFPATDLAADSGSAGKIR 536
           + +V  KG+GA A    T++IT Y        +GK  TPIA   + +A +SGSA  +R
Sbjct: 70  ERVVHAKGAGAFAYFEVTHDITKYCKAKVFEHIGK-KTPIAVRFSTVAGESGSADTVR 126

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>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -1

Query: 418 AAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAA 308
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 190 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 220

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>Y1384_MYCBO (P63394) Hypothetical ABC transporter ATP-binding protein Mb1384|
          Length = 579

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = -1

Query: 577 TAFMPLCSCSLP*SRILPALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPL 398
           TA M L    +P   +     + A   +AG    +    + T P  + ++ V     EP 
Sbjct: 228 TATMRLLGMQIPGQLLFSIASQLALIVLAGTTAALTITGTLTVPEAIALIVVMVRYLEPF 287

Query: 397 SATSACAPAMPSPVG----LGAQATHPLAPAGAAT 305
           +A S  APA+ S       +G+  T P+  AG+ T
Sbjct: 288 TAVSELAPALESTRATLGRIGSVLTAPVMVAGSGT 322

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>Y1349_MYCTU (P63393) Hypothetical ABC transporter ATP-binding protein|
           Rv1349/MT1392
          Length = 579

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = -1

Query: 577 TAFMPLCSCSLP*SRILPALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPL 398
           TA M L    +P   +     + A   +AG    +    + T P  + ++ V     EP 
Sbjct: 228 TATMRLLGMQIPGQLLFSIASQLALIVLAGTTAALTITGTLTVPEAIALIVVMVRYLEPF 287

Query: 397 SATSACAPAMPSPVG----LGAQATHPLAPAGAAT 305
           +A S  APA+ S       +G+  T P+  AG+ T
Sbjct: 288 TAVSELAPALESTRATLGRIGSVLTAPVMVAGSGT 322

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>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -1

Query: 418 AAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAA 308
           AAAP P SA +A AP+ PS       A  P  PAGA+
Sbjct: 204 AAAPAPSSAPAARAPSSPS------SAPRPARPAGAS 234

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>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = -1

Query: 565 PLCSCSLP*SRILPALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATS 386
           P+    +P +   P  P  AA       + V A    T PV        A+AP P + T 
Sbjct: 101 PVAVAQIPVAVSAPVAPPVAATPTPVAPIPVAAPVIATPPV-------AASAPTPAAVTP 153

Query: 385 ACAPAMPSPVGLGAQATHPLAPAGAATNAS 296
             +P + +P  + A  T P+A   AA  A+
Sbjct: 154 VVSPVIATPPVVPANTTVPVAAPVAAVPAA 183

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>CDSN_PIG (O19084) Corneodesmosin (S protein) (Fragment)|
          Length = 225

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
 Frame = +3

Query: 282 KSSLSLAFVAAPAGANGWVAWAPNPTGEGMAGAQALVALKGSGA-AAPTVRTYNITGYVP 458
           +S  S A V  P G+ G       P G G +G++   +L GSG  ++ ++ + + + + P
Sbjct: 89  QSGASSAIVFQPVGSGG-----VQPCGVGSSGSKGPCSLSGSGVHSSSSISSSSGSSFHP 143

Query: 459 LGKAST-PIAFPATDL---AADSGSAGKIRL 539
            G  S  P + P T     ++ S S GKI L
Sbjct: 144 CGTVSQGPCSPPGTGSFSGSSSSKSGGKIIL 174

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>MALM_ECOLI (P03841) Maltose operon periplasmic protein precursor|
          Length = 306

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
 Frame = -1

Query: 529 LPALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGL 350
           +P +P+  AR      + ++   + +  V++  L  G++AP P++  +  APA+ +P   
Sbjct: 189 IPDIPDPVARHTTDGLLKLKVKTNSSSSVLVGPL-FGSSAPAPVTVGNTAAPAVAAPAPA 247

Query: 349 GAQATHPLAP------AGAATNASERDDLDSS*VQCSAAPSCGRSS 230
             + + P+          A  NA  + D+D +      A   G +S
Sbjct: 248 PVKKSEPMLNDTESYFNTAIKNAVAKGDVDKALKLLDEAERLGSTS 293

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>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC|
           2.7.11.1) (Ste-20-related kinase)
           (Serine/threonine-protein kinase 39) (Pancreatic
           serine/threonine-protein kinase) (PS/TK) (PSTK1)
          Length = 553

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = -1

Query: 466 LPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPA 317
           LP    PV        AA   P  A +  APA P+P    A A  P A A
Sbjct: 13  LPQQAAPVTAAAAAPAAATSAPAPAPAPAAPAAPAPAPAAAPAPAPAAQA 62



 Score = 29.6 bits (65), Expect = 7.2
 Identities = 22/42 (52%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 424 VGAAAPEPLSATSACAPAMPSPVGLGAQATHPL---APAGAA 308
           V AAA  P +ATSA APA P+P    A A  P    APA AA
Sbjct: 20  VTAAAAAPAAATSAPAPA-PAPAAPAAPAPAPAAAPAPAPAA 60

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>TLX2_MOUSE (Q61663) T-cell leukemia homeobox protein 2 (Homeobox protein|
           Hox-11L1) (Homeobox TLX-2) (PMUR10F)
          Length = 284

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 484 AMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLG 347
           A  + +LP G+      V+ V A  P P+   S  APA+P P GLG
Sbjct: 63  AGSLASLPRGSGVGPGGVIRVPAHRPLPVPPPSGAAPAVPGPSGLG 108

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>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate|
           (pro-S-)-lyase) (Citrate cleavage enzyme)
          Length = 1106

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 20/67 (29%), Positives = 27/67 (40%)
 Frame = -1

Query: 517 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQA 338
           PE+   ++ G A+GV+ +P+    V     T G     P   T     A PSP       
Sbjct: 419 PETHMTAIVGAALGVKPMPT----VPTAPQTTGQFLLSPERNTGGTERAPPSPAANATPT 474

Query: 337 THPLAPA 317
            HPL  A
Sbjct: 475 EHPLTTA 481

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>NCOA6_MOUSE (Q9JL19) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2067

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = -1

Query: 529  LPALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAA-APEPLSATSACAPAMPSPVG 353
            + +LPE++   V   A G   +PS        ++  G    P PLSAT    P  P    
Sbjct: 1132 MSSLPEASGSEVPSVAGGPNNMPSHLVVSQNQLMMTGPKPGPSPLSATQGATPQQPPVNS 1191

Query: 352  LGAQATHPLAPAGAATNAS 296
            L +   H      A T  S
Sbjct: 1192 LPSSHGHHFPNVAAPTQTS 1210

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>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -1

Query: 412 APEPLSATSACAPAMPSPVGLG-----AQATHPLA--PAGAATNASERDDLDSS*VQCSA 254
           A  PL   SA +PA  SP+        A ATH  A   AG A +  E     +S    +A
Sbjct: 309 ATSPLLPASAQSPAAASPIAASPTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAA 368

Query: 253 APSCGRSSHLAY 218
           A S   S+H +Y
Sbjct: 369 AASPAPSAHTSY 380

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>MYC2_MARMO (P20389) N-myc 2 proto-oncogene protein|
          Length = 454

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 448 PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAATNA 299
           P ++++L V    P P+    A APA  S V  GA      APA AA  A
Sbjct: 185 PAVVFLLPVSKRNPVPVRVAPARAPARASAV--GAAVARAAAPATAAVAA 232

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>TISD_MOUSE (P23949) Butyrate response factor 2 (TIS11D protein)|
          Length = 367

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
 Frame = -1

Query: 499 SVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAP 320
           S +G   G    P G    +L         P P S+ S+C+ +  S     A +T   AP
Sbjct: 234 SFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSSSASSCSSSASSCSSASAASTPSGAP 293

Query: 319 AGAATNASE--------RDDLDSS*VQCSAAPSCGRSSHLAY 218
              AT A+          +DL S    C++  S G ++  A+
Sbjct: 294 TCCATAAAAALLYGPGGAEDLLSPGAPCASCSSSGANNAFAF 335

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>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -1

Query: 517 PESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEP----LSATSACAPAMPSPVGL 350
           P+S      G +  + A+P G   V+  V  V AA P P    +S TS   P +P+P+  
Sbjct: 478 PQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQ 537

Query: 349 GAQ 341
             Q
Sbjct: 538 SQQ 540

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>GAG_BAEVM (P03341) Gag polyprotein [Contains: Inner coat protein p12; Core|
           protein p15; Core shell protein p30; Nucleoprotein p10]
          Length = 536

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = -1

Query: 598 PTCHIWLTAFMPLCSCSLP*SRIL----PALPESAARSVAGNAMGVEALPSGT*PVMLYV 431
           P  H   T+   L +  +P +R L    P LP+ + + +    +  + LP      +L  
Sbjct: 98  PFLHTPSTSKSTLLALEVPKNRTLDPPKPVLPDESQQDL----LFQDPLPHPPHNPLLEP 153

Query: 430 LTVGAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPA 317
               + +P  LS  S   P+ P+P  L + +T P +PA
Sbjct: 154 PPYNSPSPPVLSPVSPTTPSAPTPSSLVSSSTPPSSPA 191

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>WBP11_MOUSE (Q923D5) WW domain-binding protein 11 (WBP-11)|
          Length = 641

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -1

Query: 415 AAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAAT 305
           A P+   A+   AP MP P  LG     PL P G  T
Sbjct: 392 APPQSAPASQIQAPPMPGPPPLGPPPAPPLRPPGPPT 428

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>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1
           kinase)
          Length = 806

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 418 AAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGA 311
           A AP P  A S+  P   +P G  +Q+T PL PAG+
Sbjct: 584 APAPAPAPAPSSAQPTS-TPTGPVSQSTGPLQPAGS 618

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>UPK3A_HUMAN (O75631) Uroplakin-3A precursor (Uroplakin III) (UPIII)|
          Length = 287

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/45 (42%), Positives = 20/45 (44%)
 Frame = +3

Query: 228 CEDLPQLGAALHWTYDESKSSLSLAFVAAPAGANGWVAWAPNPTG 362
           C DLP L A      D SK+S  L       GANG   W PN  G
Sbjct: 110 CSDLPSLDAI----GDVSKASQILNAYLVRVGANGTCLWDPNFQG 150

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>ENP2_HUMAN (Q9Y5L3) Ectonucleoside triphosphate diphosphohydrolase 2 (EC|
           3.6.1.-) (NTPDase2) (Ecto-ATPase) (CD39 antigen-like 1)
          Length = 495

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 447 GYVPLGKASTPIAFPATDLAADSGSAGKIRLYGK 548
           G + LG AST I F  T  A D  S  ++ LYG+
Sbjct: 198 GAMDLGGASTQITFETTSPAEDRASEVQLHLYGQ 231

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>DNAA_BURPS (Q63YW5) Chromosomal replication initiator protein dnaA|
          Length = 533

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 13/60 (21%)
 Frame = -1

Query: 418 AAAPEPLSATSACAPAM----PSPVGLGAQATHPLAPA---------GAATNASERDDLD 278
           +A P P++   A APA+    P+P G+ A     +A A          AA NA E  DLD
Sbjct: 102 SANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLD 161

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>SAX1_CHICK (P19601) Homeobox protein SAX-1 (CHOX-3) (Fragment)|
          Length = 232

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -1

Query: 421 GAAAPEPLSATSACAPAMPSPVGLGAQATHPLAPAGAATNA 299
           GAAAP P  A + C+P+ P P  L  Q      P+ AAT+A
Sbjct: 129 GAAAPAP-PAAARCSPSPPRPAALPGQT----FPSYAATSA 164

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>PICA_CAEEL (Q9XZI6) Phosphatidylinositol-binding clathrin assembly protein|
           unc-11 (AP180-like adaptor protein) (Uncoordinated
           protein 11)
          Length = 586

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 523 ALPESAARSVAGNAMGVEALPSGT*PVMLYVLTVGAAAPEPLSATSACAPAMPSPVGLGA 344
           A P+  AR  A  ++  +  P+G      +  T  A +  P  ATSA  P   +P+G+  
Sbjct: 471 AHPDDLARMTAQMSLNQQGAPAG------WNTTTSAVSNNPFGATSAPQPMYTAPMGMYQ 524

Query: 343 Q 341
           Q
Sbjct: 525 Q 525

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>TRAC_RHISN (P55419) Probable conjugal transfer protein traC|
          Length = 102

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +3

Query: 288 SLSLAFVAAPAGANGWVAWAPNPTGEGMAGAQALVALKGSGAA 416
           SL+  F     GANG  +    P G   AGA A  A  GSGAA
Sbjct: 55  SLAKRFRGGQGGANGASSGGKKPDGNATAGASA--AAVGSGAA 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,835,628
Number of Sequences: 219361
Number of extensions: 806808
Number of successful extensions: 4361
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 3960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4306
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result