ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49a10 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 43.1 bits (100), Expect = 2e-04 Identities = 24/69 (34%), Positives = 36/69 (52%) Frame = +2 Query: 110 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 289 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMAT 88 Query: 290 TTQMLLSLF 316 T Q+LL+ F Sbjct: 89 TLQILLARF 97
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 42.0 bits (97), Expect = 4e-04 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = +2 Query: 110 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 289 +GLV + + +S + ++DI GRRF GT+ G S+V V TG +N Sbjct: 29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMAT 88 Query: 290 TTQMLLSLF 316 T Q+LL F Sbjct: 89 TLQILLVRF 97
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 34.7 bits (78), Expect = 0.062 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +2 Query: 209 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF 316 RR+ G+I G+ V++ MTG+ ++NA TT+ + F Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARF 104
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +1 Query: 175 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 297 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.1 bits (74), Expect = 0.18 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%) Frame = -1 Query: 307 QQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEAGRLE 152 ++ G SVE A ++ D +A DG + K + L + + LAG H GR++ Sbjct: 197 EEAFGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGVGRID 255 Query: 151 H-RNHLVGVGHDEADERPGAV 92 H N LVG+ E E PGAV Sbjct: 256 HVENRLVGIKSREIYECPGAV 276
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 0.53 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 241 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 92 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 0.53 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +2 Query: 119 VVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 298 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 0.69 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 241 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 92 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 0.90 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -1 Query: 256 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 77 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 76 CPRLLSD 56 R S+ Sbjct: 104 ATRAASE 110
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -1 Query: 223 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 92 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 241 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 92 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 241 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 92 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 2.0 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -1 Query: 226 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 53 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 241 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 92 ++ +G K + L + + H GR++H N LVG+ E E PGAV Sbjct: 226 VSLNGEVLKLADLIQKLNEIAGKHGVGRIDHVENRLVGIKSREIYECPGAV 276
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 78 PSAGRTAPGRSSASSCPTPT 137 PSAG PGRS A + P PT Sbjct: 2618 PSAGHVLPGRSPAQAQPAPT 2637
>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3| Length = 926 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -2 Query: 288 RPALSMLSPVMTMTTLWPSMVPK-RNLRP-WMSMLGMLLLATKLGDSSTGTIS*VLGTTR 115 +PA S S T + + ++P+ N P W +++GM T GT S LG T Sbjct: 830 QPAASFDSSSETSSMDFNWLLPQCANTAPDWSALIGMTPSTTSQIHVLGGTYSCELGGTN 889 Query: 114 PTNGPARFA 88 TN P FA Sbjct: 890 TTNAPLNFA 898
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 229 GSKAKPSPLDVHVRDALAGHEAG 161 GS++ PSP V D AGH+AG Sbjct: 394 GSRSTPSPTPVESSDPKAGHDAG 416
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 212 RFRFGTIEGQSVVMVMTGLSMLNAG 286 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 212 RFRFGTIEGQSVVMVMTGLSMLNAG 286 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 212 RFRFGTIEGQSVVMVMTGLSMLNAG 286 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +2 Query: 212 RFRFGTIEGQSVVMVMTGLSMLNAG 286 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%) Frame = +1 Query: 175 QQEHP*HGHPRAKVSLWNHRRPKRR--HGHDRTEHAQRWSDH 294 QQ+H H HP+ K +H + +++ H + + Q++ DH Sbjct: 276 QQQHQFHDHPQQKQQFHDHPQQQQQFHDHHHQQQQKQQFHDH 317
>GCH1_CAEEL (Q19980) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 223 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 230 IEGQSVVMVMTGLSMLNAGLTTQMLLSLF 316 IE + MVM G+ +NA TT +L +F Sbjct: 178 IEASHMCMVMRGVQKINASTTTSCMLGVF 206
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -1 Query: 316 EQAQQHLGGQTSVEHAQSCHDHDDALAFDGSKAKPSPLDVHVRD 185 E+ ++ L V + D L F +KA+PS LD+ V D Sbjct: 1015 EKTEKGLSSVPEVAEVEPTTKADQGLDFAATKAEPSQLDIKVSD 1058
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +1 Query: 175 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDH 294 QQ H H H + K +H + K++ HD + Q++ DH Sbjct: 275 QQFHDHHHHQQQKQQFHDHHQQKQQF-HDHHQQQQQFHDH 313 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Frame = +1 Query: 175 QQEHP*HGHPRAKVSL--WNHRRPKRRHGHDRTEHAQRWSDH 294 QQ+ H HP+ K +H + +++ HD + Q++ DH Sbjct: 262 QQQQQFHDHPQQKQQFHDHHHHQQQKQQFHDHHQQKQQFHDH 303 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +1 Query: 175 QQEHP*HGHPRAKVSLWNHRRPKRRHG-HDRTEHAQRWSDHP 297 QQ+ H H + K +H + +++ HD + Q++ DHP Sbjct: 230 QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHP 271
>MCM2_XENLA (P55861) DNA replication licensing factor MCM2 (x.MCM2)| Length = 886 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Frame = -1 Query: 256 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPG-----AV 92 D +D S+ + + + +RD G E GR+ R L+ +E ++RP A Sbjct: 82 DEEDVEDLTASQREAAEQSMRMRDREMGRELGRM--RRGLLYDSDEEEEDRPARKRRMAE 139 Query: 91 RPADGCP 71 R A+G P Sbjct: 140 RAAEGAP 146
>PUR9_LISMO (Q8Y6C5) Bifunctional purine biosynthesis protein purH [Includes:| Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP synthetase) (ATIC)] Length = 509 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/61 (24%), Positives = 27/61 (44%) Frame = +2 Query: 110 VGLVVPNTYEMVPVLESPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGL 289 + LV+ N Y ++ P ++I N+DI G + + V V+ + +A L Sbjct: 94 IDLVIVNLYPFQETIQKPGVTLEEAIENIDIGGPSMLRSAAKNYAAVTVVVDTADYDAVL 153 Query: 290 T 292 T Sbjct: 154 T 154
>TLR13_MOUSE (Q6R5N8) Toll-like receptor 13 precursor| Length = 991 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 131 TYEMVPVLESPSFVASKSIPNMDIQGRR 214 TYE L+ P F+ KS+ ++++G+R Sbjct: 577 TYETTRTLQYPPFIKLKSLKQLNLEGQR 604
>NU4M_STRCA (O21406) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 458 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/35 (28%), Positives = 19/35 (54%) Frame = -2 Query: 306 SSIWVVRPALSMLSPVMTMTTLWPSMVPKRNLRPW 202 +S+W S+L +++ L P+ P +N+ PW Sbjct: 21 ASLWTNTTTYSLLIATISLQWLNPTYFPHKNMTPW 55
>KE4_MOUSE (Q31125) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 476 Score = 27.3 bits (59), Expect = 9.9 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +1 Query: 193 HGHPRAKVSLWNHRRPKRRHGHDRTE 270 HGH S+W+ HGH R E Sbjct: 69 HGHGHTHESIWHGHAHSHDHGHSREE 94
>HEM2_PSEAE (Q59643) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALAD) (ALADH) Length = 337 Score = 27.3 bits (59), Expect = 9.9 Identities = 22/59 (37%), Positives = 25/59 (42%) Frame = -1 Query: 259 HDHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPA 83 H D L DG +DV VR AL+ EAG V D D R GA+R A Sbjct: 136 HGQDGILDDDGYVLNDVSIDVLVRQALSHAEAGA------QVVAPSDMMDGRIGAIREA 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,952,110 Number of Sequences: 219361 Number of extensions: 793929 Number of successful extensions: 2683 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2679 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
