Clone Information

BLAST Search Result

Clone Name	bart49a09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY968589.1\| Triticum aestivum ice recrystallization inhibitio...	155	2e-34
2	gb\|AY968588.1\| Triticum aestivum ice recrystallization inhibitio...	129	9e-27
3	gb\|AC092081.3\| Gallus gallus clone WAG-77D19, complete sequence	44	0.42
4	gb\|AC164539.4\| Mus musculus chromosome 1, clone wi1-168J17, comp...	42	1.7
5	gb\|AC108318.8\| Rattus norvegicus 2 BAC CH230-256E18 (Children's ...	42	1.7
6	gb\|AC134397.6\| Mus musculus chromosome 13, clone RP23-265J12, co...	42	1.7
7	emb\|CR954189.2\| Medicago truncatula chromosome 5 clone mte1-73d1...	42	1.7
8	emb\|AL355585.15\| Human DNA sequence from clone RP11-535I8 on chr...	42	1.7
9	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	42	1.7
10	gb\|AY074396.1\| Chlorobium limicola rare lipoprotein A (rlpA), cy...	42	1.7
11	ref\|XM_678563.1\| PREDICTED: Danio rerio similar to Serine/threon...	42	1.7
12	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
13	gb\|AC154460.2\| Mus musculus BAC clone RP24-163G22 from chromosom...	42	1.7
14	gb\|AE005030.1\| Halobacterium sp. NRC-1 section 61 of 170 of the ...	42	1.7
15	dbj\|AK067558.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
16	emb\|AL606450.3\|OSJN00001 Oryza sativa genomic DNA, chromosome 4,...	42	1.7
17	emb\|AL929492.6\| Zebrafish DNA sequence from clone CH211-155K1, c...	42	1.7
18	ref\|XM_462651.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.5
19	ref\|NM_190487.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.5
20	gb\|AC093353.11\| Mus musculus chromosome 10, clone RP23-19C22, co...	40	6.5
21	gb\|AC133214.3\| Mus musculus BAC clone RP23-72A15 from chromosome...	40	6.5
22	ref\|XM_389782.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	40	6.5
23	gb\|AC124415.4\| Mus musculus BAC clone RP24-298J2 from chromosome...	40	6.5
24	gb\|AC012569.18\| Homo sapiens chromosome , clone RP11-8H2, comple...	40	6.5
25	emb\|AL589678.9\| Human DNA sequence from clone RP11-74C3 on chrom...	40	6.5
26	emb\|AL451140.15\| Human DNA sequence from clone RP11-540H22 on ch...	40	6.5
27	emb\|AL050318.13\|HSDJ977B1 Human DNA sequence from clone RP5-977B...	40	6.5
28	emb\|AL033525.10\|HS1108H3 Human DNA sequence from clone RP5-1108H...	40	6.5
29	gb\|AC164004.3\| Mus musculus chromosome 5, clone RP23-58C20, comp...	40	6.5
30	emb\|BX572594.1\| Rhodopseudomonas palustris CGA009 complete genom...	40	6.5
31	gb\|AY044827.1\| Sus scrofa H19 gene, complete sequence	40	6.5
32	gb\|AC092548.10\| Oryza sativa chromosome 10 BAC OSJNBa0073L01 gen...	40	6.5
33	gb\|AC084754.14\| Homo sapiens 12p BAC RP11-874G11 (Roswell Park C...	40	6.5
34	emb\|CR522960.1\| Gallus gallus finished cDNA, clone ChEST746l23	40	6.5
35	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	40	6.5
36	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
37	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
38	gb\|AC097375.3\| Homo sapiens BAC clone RP11-73G16 from 4, complet...	40	6.5
39	gb\|AC107078.4\| Homo sapiens BAC clone RP11-582N16 from 2, comple...	40	6.5
40	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.5
41	dbj\|AP003271.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
42	gb\|AC103897.3\| Papio anubis clone RP41-461D5, complete sequence	40	6.5
43	emb\|AL031427.15\|HS167A19 Human DNA sequence from clone RP1-167A1...	40	6.5
44	dbj\|AK068741.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.5
45	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	40	6.5
46	dbj\|AK064090.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.5
47	gb\|AC102476.14\| Mus musculus chromosome 5, clone RP24-396L12, co...	40	6.5
48	gb\|DQ019626.1\| Triticum aestivum pre-mRNA processing factor (RSZ...	40	6.5
49	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
50	emb\|AL606448.3\|OSJN00013 Oryza sativa genomic DNA, chromosome 4,...	40	6.5
51	dbj\|AP008951.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	6.5
52	emb\|AL355099.5\|CNS05TCI Human chromosome 14 DNA sequence BAC R-1...	40	6.5
53	emb\|AL606916.4\| Mouse DNA sequence from clone RP23-144L24 on chr...	40	6.5

>gb|AY968589.1| Triticum aestivum ice recrystallization inhibition protein 2
           precursor, mRNA, complete cds
          Length = 1596

 Score =  155 bits (78), Expect = 2e-34
 Identities = 195/234 (83%)
 Strand = Plus / Plus

                                                                       
Query: 237 tggtccggcgcctcgtgctgcgactgggaaggcgtgggctgcgacggcaccaccggtcgc 296
           ||||| ||||||||||||||||| |||||||| ||||||||| | ||  ||| ||| |||
Sbjct: 163 tggtctggcgcctcgtgctgcgattgggaaggtgtgggctgccatggtgccagcggccgc 222

                                                                       
Query: 297 gtcacggcgctgcggctccccggccacggcctcgccgggcctatcccgggagcttctcta 356
           |||||||| ||||||||||  || ||||||||||| ||||| ||||| ||||| || || 
Sbjct: 223 gtcacggctctgcggctccatggtcacggcctcgcggggcccatcccaggagcctccctt 282

                                                                       
Query: 357 gcgggcctcgtgtggctggaggagctcttcctcggctccaactctttcgtcggcgttctc 416
           ||||||||| |  || |||||||||||||||| ||||||||||||||||  |||   || 
Sbjct: 283 gcgggcctcataaggttggaggagctcttccttggctccaactctttcgcgggcaccctt 342

                                                                 
Query: 417 cccgacgagctcttcggcctcgccaggctaaggaagctctcactcgcatccaac 470
           ||||||||||||||| |||| ||  ||||   || |||||| ||||||||||||
Sbjct: 343 cccgacgagctcttcagccttgctgggctgcagaggctctccctcgcatccaac 396

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>gb|AY968588.1| Triticum aestivum ice recrystallization inhibition protein 1
           precursor, mRNA, complete cds
          Length = 1079

 Score =  129 bits (65), Expect = 9e-27
 Identities = 197/241 (81%)
 Strand = Plus / Plus

                                                                       
Query: 90  tccatggcgaggtgctggctgctgctcctcctctgtgcgttcctctggccggcggtgagc 149
           ||||||||||  ||| |||||||||||||  |||  |||||||||| ||||||||   | 
Sbjct: 86  tccatggcgaaatgcgggctgctgctcctgttcttggcgttcctcttgccggcggcacgt 145

                                                                       
Query: 150 gcgacgccgtgccaccaccacgacctccacgcgctgcggggcttcgccgaagagctcggc 209
           || ||| ||||||||| | | |||||||  ||||| ||||||||||||| | | ||| ||
Sbjct: 146 gcaacgtcgtgccaccccgatgacctccgtgcgctacggggcttcgccggaaacctcagc 205

                                                                       
Query: 210 ggcgggggagccctgctccgcaccgcatggtccggcgcctcgtgctgcgactgggaaggc 269
           || ||||  ||||| |||||  | || |||||||| ||||| ||||||| ||||||||||
Sbjct: 206 ggtggggctgccctcctccgtgctgcctggtccggtgcctcctgctgcgtctgggaaggc 265

                                                                       
Query: 270 gtgggctgcgacggcaccaccggtcgcgtcacggcgctgcggctccccggccacggcctc 329
           |||  |||||| ||||| | ||| || |||||||||||||||||||| || |||||||||
Sbjct: 266 gtgaactgcgatggcactagcggccgtgtcacggcgctgcggctccctgggcacggcctc 325

            
Query: 330 g 330
           |
Sbjct: 326 g 326

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>gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence
          Length = 144092

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 6      cacttgctttccaaaacaaaac 27
              ||||||||||||||||||||||
Sbjct: 107596 cacttgctttccaaaacaaaac 107617

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>gb|AC164539.4| Mus musculus chromosome 1, clone wi1-168J17, complete sequence
          Length = 43396

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    cgtgtatacagtcatagcaga 71
             |||||||||||||||||||||
Sbjct: 24908 cgtgtatacagtcatagcaga 24888

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>gb|AC108318.8| Rattus norvegicus 2 BAC CH230-256E18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210322

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1      aacaacacttgctttccaaaacaaa 25
              |||||||||||||||||||| ||||
Sbjct: 123330 aacaacacttgctttccaaaccaaa 123354

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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      acacttgctttccaaaacaaa 25
              |||||||||||||||||||||
Sbjct: 178732 acacttgctttccaaaacaaa 178712

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>emb|CR954189.2| Medicago truncatula chromosome 5 clone mte1-73d17, COMPLETE SEQUENCE
          Length = 110556

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 160  gccaccaccacgacctccacg 180
            |||||||||||||||||||||
Sbjct: 8183 gccaccaccacgacctccacg 8163

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>emb|AL355585.15| Human DNA sequence from clone RP11-535I8 on chromosome 9 Contains a
             meningioma expressed antigen 6 (coiled-coil proline-rich)
             (MGEA6) pseudogene, complete sequence
          Length = 76321

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   gtgctggctgctgctcctcct 121
             |||||||||||||||||||||
Sbjct: 47116 gtgctggctgctgctcctcct 47096

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 403     tcgtcggcgttctccccgacgagctcttc 431
               ||||||||| ||||||||||||| |||||
Sbjct: 1959405 tcgtcggcgatctccccgacgagttcttc 1959377

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>gb|AY074396.1| Chlorobium limicola rare lipoprotein A (rlpA), cytochrome c subunit
            of flavocytochrome c sulfide dehydrogenase (soxE), and
            flavoprotein subunit of flavocytochrome c sulfide
            dehydrogenase (soxF1) genes, complete cds
          Length = 7272

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 146  gagcgcgacgccgtgccaccaccac 170
            ||||| |||||||||||||||||||
Sbjct: 4619 gagcgagacgccgtgccaccaccac 4595

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>ref|XM_678563.1| PREDICTED: Danio rerio similar to Serine/threonine-protein kinase
           Pim-3 (LOC555903), mRNA
          Length = 1038

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 102 tgctggctgctgctcctcctc 122
           |||||||||||||||||||||
Sbjct: 209 tgctggctgctgctcctcctc 189

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 252     tgctgcgactgggaaggcgtgggctgcgacggc 284
               ||||||| |||||||||||||| ||||| ||||
Sbjct: 1147931 tgctgcggctgggaaggcgtggtctgcggcggc 1147963



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 314      ccccggccacggcctcgccg 333
                ||||||||||||||||||||
Sbjct: 22291706 ccccggccacggcctcgccg 22291687

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>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete
             sequence
          Length = 197149

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     acacttgctttccaaaacaaa 25
             |||||||||||||||||||||
Sbjct: 92007 acacttgctttccaaaacaaa 91987

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>gb|AE005030.1| Halobacterium sp. NRC-1 section 61 of 170 of the complete genome
          Length = 10395

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 273  ggctgcgacggcaccaccggtcgcg 297
            |||||||||||| ||||||||||||
Sbjct: 1575 ggctgcgacggccccaccggtcgcg 1551

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>dbj|AK067558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K04, full
           insert sequence
          Length = 2553

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 252 tgctgcgactgggaaggcgtgggctgcgacggc 284
           ||||||| |||||||||||||| ||||| ||||
Sbjct: 204 tgctgcggctgggaaggcgtggtctgcggcggc 236

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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 252   tgctgcgactgggaaggcgtgggctgcgacggc 284
             ||||||| |||||||||||||| ||||| ||||
Sbjct: 90313 tgctgcggctgggaaggcgtggtctgcggcggc 90345

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>emb|AL929492.6| Zebrafish DNA sequence from clone CH211-155K1, complete sequence
          Length = 157062

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    tgctggctgctgctcctcctc 122
              |||||||||||||||||||||
Sbjct: 110936 tgctggctgctgctcctcctc 110956

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>ref|XM_462651.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 314 ccccggccacggcctcgccg 333
           ||||||||||||||||||||
Sbjct: 238 ccccggccacggcctcgccg 219

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>ref|NM_190487.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 426

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 gagctcggcggcgggggagc 220
           ||||||||||||||||||||
Sbjct: 246 gagctcggcggcgggggagc 227

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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    ctggctgctgctcctcctct 123
              ||||||||||||||||||||
Sbjct: 175717 ctggctgctgctcctcctct 175736

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>gb|AC133214.3| Mus musculus BAC clone RP23-72A15 from chromosome 10, complete sequence
          Length = 157067

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    ctggctgctgctcctcctct 123
              ||||||||||||||||||||
Sbjct: 129634 ctggctgctgctcctcctct 129615

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>ref|XM_389782.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09606.1)
           partial mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  tggcgaggtgctggctgctg 113
           ||||||||||||||||||||
Sbjct: 971 tggcgaggtgctggctgctg 952

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>gb|AC124415.4| Mus musculus BAC clone RP24-298J2 from chromosome 10, complete sequence
          Length = 160137

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   ctggctgctgctcctcctct 123
             ||||||||||||||||||||
Sbjct: 92027 ctggctgctgctcctcctct 92046

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>gb|AC012569.18| Homo sapiens chromosome , clone RP11-8H2, complete sequence
          Length = 153276

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    gctggctgctgctcctcctc 122
              ||||||||||||||||||||
Sbjct: 112277 gctggctgctgctcctcctc 112296

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>emb|AL589678.9| Human DNA sequence from clone RP11-74C3 on chromosome 9 Contains the 3'
             end of a novel gene, complete sequence
          Length = 134922

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gtgctggctgctgctcctcc 120
             ||||||||||||||||||||
Sbjct: 37845 gtgctggctgctgctcctcc 37826

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>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5'
              end of a novel gene and the 3' end of a novel gene,
              complete sequence
          Length = 187738

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    gtgctggctgctgctcctcc 120
              ||||||||||||||||||||
Sbjct: 159298 gtgctggctgctgctcctcc 159279

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>emb|AL050318.13|HSDJ977B1 Human DNA sequence from clone RP5-977B1 on chromosome 20 Contains the
             3' end of the SLA2 gene for Src-like-adaptor 2, the
             HNRPA3P gene for heterogeneous nuclear ribonucleoprotein
             A3 pseudogene, the C20orf24 gene for chromosome 24 open
             reading frame 24 (putative RAB5-interacting protein), the
             TGIF2 gene for TGF(beta)-induced transcription factor 2,
             the MYRL2 gene for myosin regulatory light chain 2 (smooth
             muscle variant), the 3' end of a novel gene (KIAA0964), a
             novel gene, and three CpG islands, complete sequence
          Length = 145068

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 203   gctcggcggcgggggagccctgct 226
             ||||||||||||||| ||||||||
Sbjct: 84855 gctcggcggcgggggggccctgct 84832

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>emb|AL033525.10|HS1108H3 Human DNA sequence from clone RP5-1108H3 on chromosome 1p35.1-36.31
             Contains ESTs, STSs, GSSs and an ata repeat polymorphism,
             complete sequence
          Length = 164901

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   gtgctggctgctgctcctcc 120
             ||||||||||||||||||||
Sbjct: 95556 gtgctggctgctgctcctcc 95575

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>gb|AC164004.3| Mus musculus chromosome 5, clone RP23-58C20, complete sequence
          Length = 198872

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    ccaccaccacgacctccacg 180
              ||||||||||||||||||||
Sbjct: 182405 ccaccaccacgacctccacg 182386

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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    cgccgaagagctcggcggcg 213
              ||||||||||||||||||||
Sbjct: 202082 cgccgaagagctcggcggcg 202063

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>gb|AY044827.1| Sus scrofa H19 gene, complete sequence
          Length = 56404

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   gctccccggccacggcctcg 330
             ||||||||||||||||||||
Sbjct: 14920 gctccccggccacggcctcg 14901

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>gb|AC092548.10| Oryza sativa chromosome 10 BAC OSJNBa0073L01 genomic sequence, complete
             sequence
          Length = 179199

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   ccaccaccacgacctccacg 180
             ||||||||||||||||||||
Sbjct: 62649 ccaccaccacgacctccacg 62668

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>gb|AC084754.14| Homo sapiens 12p BAC RP11-874G11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 176626

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   gtgctggctgctgctcctcc 120
             ||||||||||||||||||||
Sbjct: 42305 gtgctggctgctgctcctcc 42324

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>emb|CR522960.1| Gallus gallus finished cDNA, clone ChEST746l23
          Length = 963

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 369 tggctggaggagctcttcct 388
           ||||||||||||||||||||
Sbjct: 426 tggctggaggagctcttcct 445

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     cgccgaagagctcggcggcg 213
               ||||||||||||||||||||
Sbjct: 3347078 cgccgaagagctcggcggcg 3347059

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 161      ccaccaccacgacctccacg 180
                ||||||||||||||||||||
Sbjct: 10731881 ccaccaccacgacctccacg 10731900

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 201      gagctcggcggcgggggagc 220
                ||||||||||||||||||||
Sbjct: 35838112 gagctcggcggcgggggagc 35838131

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>gb|AC097375.3| Homo sapiens BAC clone RP11-73G16 from 4, complete sequence
          Length = 183746

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    tcctcctctgtgcgttcctc 134
              ||||||||||||||||||||
Sbjct: 110615 tcctcctctgtgcgttcctc 110596

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>gb|AC107078.4| Homo sapiens BAC clone RP11-582N16 from 2, complete sequence
          Length = 31946

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gtgctggctgctgctcctcc 120
             ||||||||||||||||||||
Sbjct: 17053 gtgctggctgctgctcctcc 17034

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    gcgctgcggggcttcgccga 199
              ||||||||||||||||||||
Sbjct: 456555 gcgctgcggggcttcgccga 456574

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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    gagctcggcggcgggggagc 220
              ||||||||||||||||||||
Sbjct: 102570 gagctcggcggcgggggagc 102589

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>gb|AC103897.3| Papio anubis clone RP41-461D5, complete sequence
          Length = 156269

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    gtgctggctgctgctcctcc 120
              ||||||||||||||||||||
Sbjct: 122140 gtgctggctgctgctcctcc 122121

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>emb|AL031427.15|HS167A19 Human DNA sequence from clone RP1-167A19 on chromosome 1p32.1-33,
             complete sequence
          Length = 152037

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   ctgctgctcctcctctgtgc 127
             ||||||||||||||||||||
Sbjct: 44469 ctgctgctcctcctctgtgc 44450

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>dbj|AK068741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013168I20, full
           insert sequence
          Length = 669

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 201 gagctcggcggcgggggagc 220
           ||||||||||||||||||||
Sbjct: 180 gagctcggcggcgggggagc 199

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    ggcggtgagcgcgacgccgt 159
              ||||||||||||||||||||
Sbjct: 713840 ggcggtgagcgcgacgccgt 713859

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>dbj|AK064090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D06, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 314 ccccggccacggcctcgccg 333
           ||||||||||||||||||||
Sbjct: 332 ccccggccacggcctcgccg 313

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>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   ccaccaccacgacctccacg 180
             ||||||||||||||||||||
Sbjct: 98899 ccaccaccacgacctccacg 98918

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>gb|DQ019626.1| Triticum aestivum pre-mRNA processing factor (RSZ22) mRNA, complete
           cds
          Length = 940

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 ccaccaccacgacctccacg 180
           ||||||||||||||||||||
Sbjct: 370 ccaccaccacgacctccacg 351

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 161      ccaccaccacgacctccacg 180
                ||||||||||||||||||||
Sbjct: 10737920 ccaccaccacgacctccacg 10737939

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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   ccccggccacggcctcgccg 333
             ||||||||||||||||||||
Sbjct: 42608 ccccggccacggcctcgccg 42589

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>dbj|AP008951.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT45D07, TM0932a,
             complete sequence
          Length = 28948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 274   gctgcgacggcaccaccggtcgcgtcac 301
             ||||||||  ||||||||||||||||||
Sbjct: 23954 gctgcgactccaccaccggtcgcgtcac 23981

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>emb|AL355099.5|CNS05TCI Human chromosome 14 DNA sequence BAC R-1A16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155827

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gtgctggctgctgctcctcc 120
             ||||||||||||||||||||
Sbjct: 88765 gtgctggctgctgctcctcc 88746

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>emb|AL606916.4| Mouse DNA sequence from clone RP23-144L24 on chromosome 4, complete
              sequence
          Length = 190214

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ggctgctgctcctcctctgt 125
              ||||||||||||||||||||
Sbjct: 106104 ggctgctgctcctcctctgt 106085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,755,927
Number of Sequences: 3902068
Number of extensions: 3755927
Number of successful extensions: 81697
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80753
Number of HSP's gapped (non-prelim): 941
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result