ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49a07 |
|---|---|
| Clone Library Name | barley_pub |
>PRS7_ORYSA (Q9FXT9) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 426 Score = 89.0 bits (219), Expect = 3e-18 Identities = 41/46 (89%), Positives = 43/46 (93%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 EKNPRPLDEDDIALLKTYGLGPYSTSIK EKEIKE+ K+INDLCG Sbjct: 12 EKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCG 57
>PRS7_PRUPE (O64982) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 425 Score = 87.4 bits (215), Expect = 1e-17 Identities = 39/46 (84%), Positives = 43/46 (93%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 EKNPRPLDEDDIALLKTYGLGPYST IK AEKE+K+L K++NDLCG Sbjct: 11 EKNPRPLDEDDIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCG 56
>PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1a) (Regulatory particle triple-A ATPase subunit 1a) Length = 426 Score = 84.7 bits (208), Expect = 6e-17 Identities = 39/46 (84%), Positives = 41/46 (89%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 EKNPRPLDEDDIALLKTYGLGPYS IK EKEIK+L K+INDLCG Sbjct: 12 EKNPRPLDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCG 57
>PRS7_SPIOL (Q41365) 26S protease regulatory subunit 7 (26S proteasome subunit| 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) Length = 426 Score = 81.6 bits (200), Expect = 5e-16 Identities = 37/46 (80%), Positives = 41/46 (89%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 EKNPRPLDEDDIALLKTYGLGPYS SIK EKEIK++ K++NDL G Sbjct: 12 EKNPRPLDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIG 57
>PRS7_RAT (Q63347) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 51.2 bits (121), Expect = 8e-07 Identities = 26/46 (56%), Positives = 32/46 (69%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 +K R LDE DIALLKTYG YS IK E +I++L K+IN+L G Sbjct: 18 DKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTG 63
>PRS7_MOUSE (P46471) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 51.2 bits (121), Expect = 8e-07 Identities = 26/46 (56%), Positives = 32/46 (69%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 +K R LDE DIALLKTYG YS IK E +I++L K+IN+L G Sbjct: 18 DKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTG 63
>PRS7_HUMAN (P35998) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 432 Score = 51.2 bits (121), Expect = 8e-07 Identities = 26/46 (56%), Positives = 32/46 (69%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 +K R LDE DIALLKTYG YS IK E +I++L K+IN+L G Sbjct: 18 DKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTG 63
>PRS7_XENLA (P46472) 26S protease regulatory subunit 7 (MSS1 protein)| Length = 433 Score = 51.2 bits (121), Expect = 8e-07 Identities = 26/46 (56%), Positives = 32/46 (69%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 +K R LDE DIALLKTYG YS IK E +I++L K+IN+L G Sbjct: 19 DKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTG 64
>PRS7_CAEEL (Q18787) Probable 26S protease regulatory subunit 7| Length = 435 Score = 51.2 bits (121), Expect = 8e-07 Identities = 23/46 (50%), Positives = 33/46 (71%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 EKN + LDE DIA+LK YG GPY+ +KT + +I+ K++N+L G Sbjct: 21 EKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSG 66
>PRS7_SCHPO (O42931) 26S protease regulatory subunit 7 homolog| Length = 438 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/46 (47%), Positives = 31/46 (67%) Frame = +2 Query: 2 EKNPRPLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 +KNP PLDE DI LLK+Y GPY+ + +++ + + KRIND G Sbjct: 21 DKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVG 66
>PRS7_YEAST (P33299) 26S protease regulatory subunit 7 homolog (CIM5 protein)| (TAT-binding homolog 3) Length = 467 Score = 42.0 bits (97), Expect = 5e-04 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = +2 Query: 17 PLDEDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDLCG 139 PL E DI +LK+YG PY+ +K E ++K++ RI + G Sbjct: 28 PLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAG 68
>UTP11_ORYSA (Q8S1Z1) Probable U3 small nucleolar RNA-associated protein 11 (U3| snoRNA-associated protein 11) Length = 229 Score = 27.7 bits (60), Expect = 9.1 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = +2 Query: 26 EDDIALLKTYGLGPYSTSIKTAEKEIKELGKRINDL 133 ED++ LLKT +G I++ +K+I++L +++L Sbjct: 88 EDELMLLKTKDMGYILQGIQSEKKKIEKLSSMLHEL 123
>GATB_PSEAE (Q9HVT7) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B| (EC 6.3.5.-) (Asp/Glu-ADT subunit B) Length = 481 Score = 27.7 bits (60), Expect = 9.1 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +2 Query: 53 YGLGPYSTSIKTAEKEIKELGKRINDLCG 139 YGL Y S+ +A +E+ + +++ +CG Sbjct: 310 YGLSAYDASVLSASREMADYFEKVQGICG 338 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,646,540 Number of Sequences: 219361 Number of extensions: 135718 Number of successful extensions: 532 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 524 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 532 length of database: 80,573,946 effective HSP length: 22 effective length of database: 75,748,004 effective search space used: 1817952096 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
