ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart49a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468146.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1281 Score = 141 bits (71), Expect = 6e-31 Identities = 122/139 (87%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 34 gagaagaacccccgcccgctcgacgaggacgacatcgctctcctcaagacctacgggctt 93 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 |||||||||||||| ||||| |||| || ||||| || || || || ||| |||| | Sbjct: 94 gggccatactccacaagcattaagaaggtggagaaagaaataaaagaaatggctaagaag 153 Query: 122 atcaatgacctttgtggga 140 ||||||||||||||||||| Sbjct: 154 atcaatgacctttgtggga 172
>gb|AY104186.1| Zea mays PCO090008 mRNA sequence Length = 1614 Score = 137 bits (69), Expect = 1e-29 Identities = 120/137 (87%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 |||||||| || ||||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 137 gagaagaatccccgcccgctcgacgaggacgacatcgcgctcctcaaaacctatgggctt 196 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 ||||| ||||| || ||||| |||| || |||||||||||||||||| ||| ||||| Sbjct: 197 gggccgtactcgactagcattaagaaggtcgagaaggagatcaaggaaatggccaagaaa 256 Query: 122 atcaatgacctttgtgg 138 ||||||||||||||||| Sbjct: 257 atcaatgacctttgtgg 273
>dbj|AK109151.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-F10, full insert sequence Length = 666 Score = 129 bits (65), Expect = 2e-27 Identities = 80/85 (94%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 574 gagaagaacccccgcccgctcgacgaggacgacatcgctctcctcaagacctacgggctt 633 Query: 62 gggccatactccacgagcatcaaga 86 |||||||||||||| ||||| |||| Sbjct: 634 gggccatactccacaagcattaaga 658 Score = 42.1 bits (21), Expect = 0.43 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 aagaggatcaatgacctttgtggga 140 |||| |||||||||||||||||||| Sbjct: 2 aagaagatcaatgacctttgtggga 26
>dbj|AK061876.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A12, full insert sequence Length = 1567 Score = 121 bits (61), Expect = 6e-25 Identities = 118/137 (86%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 147 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacggtctt 206 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 || || ||||| || ||||| |||| || |||||||| ||||| ||| ||| |||| | Sbjct: 207 ggaccttactcgaccagcattaagaaggttgagaaggaaatcaaagagatggcgaagaag 266 Query: 122 atcaatgacctttgtgg 138 || ||||| || ||||| Sbjct: 267 ataaatgatctctgtgg 283
>dbj|AK100060.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J17, full insert sequence Length = 1510 Score = 121 bits (61), Expect = 6e-25 Identities = 118/137 (86%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 147 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacggtctt 206 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 || || ||||| || ||||| |||| || |||||||| ||||| ||| ||| |||| | Sbjct: 207 ggaccttactcgaccagcattaagaaggttgagaaggaaatcaaagagatggcgaagaag 266 Query: 122 atcaatgacctttgtgg 138 || ||||| || ||||| Sbjct: 267 ataaatgatctctgtgg 283
>dbj|AK070538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060N22, full insert sequence Length = 1828 Score = 121 bits (61), Expect = 6e-25 Identities = 118/137 (86%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 148 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacggtctt 207 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 || || ||||| || ||||| |||| || |||||||| ||||| ||| ||| |||| | Sbjct: 208 ggaccttactcgaccagcattaagaaggttgagaaggaaatcaaagagatggcgaagaag 267 Query: 122 atcaatgacctttgtgg 138 || ||||| || ||||| Sbjct: 268 ataaatgatctctgtgg 284
>dbj|AB033535.1| Oryza sativa (japonica cultivar-group) OsRPT1 mRNA for 26S proteasome regulatory particle triple-A ATPase subunit1, complete cds Length = 1481 Score = 121 bits (61), Expect = 6e-25 Identities = 118/137 (86%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 51 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacggtctt 110 Query: 62 gggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggcaagagg 121 || || ||||| || ||||| |||| || |||||||| ||||| ||| ||| |||| | Sbjct: 111 ggaccttactcgaccagcattaagaaggttgagaaggaaatcaaagagatggcgaagaag 170 Query: 122 atcaatgacctttgtgg 138 || ||||| || ||||| Sbjct: 171 ataaatgatctctgtgg 187
>dbj|AK103801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033146D17, full insert sequence Length = 1512 Score = 113 bits (57), Expect = 1e-22 Identities = 78/85 (91%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacgggctt 61 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct: 148 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacggtctt 207 Query: 62 gggccatactccacgagcatcaaga 86 || || ||||| || ||||| |||| Sbjct: 208 ggaccttactcgaccagcattaaga 232
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4678455 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacg 4678509
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090D06 Length = 174500 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 165819 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacg 165873
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 101 bits (51), Expect = 5e-19 Identities = 54/55 (98%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 41054 gagaagaacccgcgcccgctcgacgaggacgacatcgccctcctcaagacctacg 41108
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 3e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 33337572 gagaagaacccccgcccgctcgacgaggacgacatcgctctcctcaagacctacg 33337518 Score = 54.0 bits (27), Expect = 1e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 56 gggcttgggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggc 115 |||||||||||||||||||| ||||| |||| || ||||| || || || || ||| Sbjct: 33337167 gggcttgggccatactccacaagcattaagaaggtggagaaagaaataaaagaaatggct 33337108 Query: 116 aagaggatcaatgacctttgtgg 138 |||| |||||||||||||||||| Sbjct: 33337107 aagaagatcaatgacctttgtgg 33337085
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 85.7 bits (43), Expect = 3e-14 Identities = 52/55 (94%) Strand = Plus / Minus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct: 78322 gagaagaacccccgcccgctcgacgaggacgacatcgctctcctcaagacctacg 78268 Score = 54.0 bits (27), Expect = 1e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 56 gggcttgggccatactccacgagcatcaagacggccgagaaggagatcaaggagttgggc 115 |||||||||||||||||||| ||||| |||| || ||||| || || || || ||| Sbjct: 77917 gggcttgggccatactccacaagcattaagaaggtggagaaagaaataaaagaaatggct 77858 Query: 116 aagaggatcaatgacctttgtgg 138 |||| |||||||||||||||||| Sbjct: 77857 aagaagatcaatgacctttgtgg 77835
>gb|AF041258.1|AF041258 Prunus persica 26S proteasome subunit 7 mRNA, complete cds Length = 1539 Score = 65.9 bits (33), Expect = 3e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagaccta 54 ||||||||||| | || || |||||||||||||||||||||||||||||||| Sbjct: 139 gagaagaaccctagaccgcttgacgaggacgacatcgccctcctcaagaccta 191
>gb|AC135796.25| Medicago truncatula clone mth2-28b18, complete sequence Length = 118959 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 ||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||| Sbjct: 59024 gagaagaaccctcgcccccttgacgaggatgatatcgctctcctcaaaacctacg 58970
>dbj|AP006734.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02K14, TM0918c, complete sequence Length = 26540 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Minus Query: 2 gagaagaacccgcgccccctcgacgaggacgacatcgccctcctcaagacctacg 56 |||||||| || |||||||| || ||||| ||||||||||||||||| ||||||| Sbjct: 469 gagaagaatcctcgccccctggatgaggatgacatcgccctcctcaaaacctacg 415
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.11 Identities = 25/26 (96%) Strand = Plus / Plus Query: 24 acgaggacgacatcgccctcctcaag 49 ||||||||||||||||||| |||||| Sbjct: 412581 acgaggacgacatcgccctgctcaag 412606 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 cctcgacgaggacgacatcgccct 42 |||||||||| ||||||||||||| Sbjct: 41918 cctcgacgagcacgacatcgccct 41895
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 gcgccccctcgacgaggacgac 34 |||||||||||||||||||||| Sbjct: 126835 gcgccccctcgacgaggacgac 126814
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.11 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 gcgccccctcgacgaggacgac 34 |||||||||||||||||||||| Sbjct: 8109693 gcgccccctcgacgaggacgac 8109714 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 tcgacgaggacgacatcgccctc 43 |||||||||||||||||| |||| Sbjct: 784402 tcgacgaggacgacatcggcctc 784424 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gacgacatcgccctcctca 47 ||||||||||||||||||| Sbjct: 131581 gacgacatcgccctcctca 131599
>gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940143D9, complete sequence Length = 118759 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gccgagaaggagatcaaggag 109 ||||||||||||||||||||| Sbjct: 17449 gccgagaaggagatcaaggag 17469
>gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940139D9, complete sequence Length = 118752 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gccgagaaggagatcaaggag 109 ||||||||||||||||||||| Sbjct: 17448 gccgagaaggagatcaaggag 17468
>gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940124D9, complete sequence Length = 118889 Score = 42.1 bits (21), Expect = 0.43 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gccgagaaggagatcaaggag 109 ||||||||||||||||||||| Sbjct: 101311 gccgagaaggagatcaaggag 101291
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggccgagaaggagatcaagg 107 |||||||||||||||||||| Sbjct: 2373183 ggccgagaaggagatcaagg 2373164
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 gacggccgagaaggagatcaagga 108 |||||||| ||||||||||||||| Sbjct: 1715906 gacggccgcgaaggagatcaagga 1715883
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 9 acccgcgccccctcgacgaggacg 32 |||||||| ||||||||||||||| Sbjct: 349032 acccgcgcaccctcgacgaggacg 349055
>ref|XM_384228.1| Gibberella zeae PH-1 chromosome 2 conserved hypothetical protein (FG04052.1) partial mRNA Length = 207 Score = 40.1 bits (20), Expect = 1.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 cctcgacgaggacgacatcgccctcctc 46 |||||||||||||||||| ||| ||||| Sbjct: 69 cctcgacgaggacgacatggccttcctc 96
>emb|Y14317.1|SRFRPS Streptomyces reticuli furS and cpeB genes Length = 2904 Score = 40.1 bits (20), Expect = 1.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 21 tcgacgaggacgacatcgccctcctcaagacc 52 ||||||| | |||||||||| ||||||||||| Sbjct: 1918 tcgacgacgccgacatcgccatcctcaagacc 1949
>gb|DQ397830.1| Cenarchaeum symbiosum clone C01C10, complete sequence Length = 40511 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 aagacggccgagaaggagatcaag 106 |||||||||||||||||| ||||| Sbjct: 36097 aagacggccgagaaggagctcaag 36120
>gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, complete sequence Length = 184285 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 acatcgccctcctcaagacctacg 56 ||||| |||||||||||||||||| Sbjct: 62924 acatcaccctcctcaagacctacg 62901
>emb|AL844863.7| Mouse DNA sequence from clone RP23-273C23 on chromosome X, complete sequence Length = 143387 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 agaaggagatcaaggagttg 112 |||||||||||||||||||| Sbjct: 31982 agaaggagatcaaggagttg 32001
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 ggacgacatcgccctcctcaaga 50 |||||| |||||||||||||||| Sbjct: 2859183 ggacgatatcgccctcctcaaga 2859161
>ref|XM_523172.1| PREDICTED: Pan troglodytes LOC467777 (LOC467777), mRNA Length = 2781 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 105 aggagttgggcaagaggatcaat 127 ||||||||| ||||||||||||| Sbjct: 1844 aggagttggccaagaggatcaat 1866
>ref|NM_193016.2| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 586 cgagaaggagatcaaggag 604
>gb|AY440205.1| Armigeres subalbatus ASAP ID: 44064 unknown mRNA sequence Length = 584 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 agacggccgagaaggagat 102 ||||||||||||||||||| Sbjct: 413 agacggccgagaaggagat 431
>ref|XM_609569.2| PREDICTED: Bos taurus similar to peptidylarginine deiminase type 6 (LOC531084), mRNA Length = 2391 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 ggccgagaaggagatcaag 106 ||||||||||||||||||| Sbjct: 1137 ggccgagaaggagatcaag 1119
>gb|AY487819.1| Tigriopus japonicus RhoA mRNA, complete cds Length = 1043 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 atcaaggagttgggcaaga 119 ||||||||||||||||||| Sbjct: 645 atcaaggagttgggcaaga 663
>ref|XM_790244.1| PREDICTED: Strongylocentrotus purpuratus similar to serine/threonine protein kinase TAO1 (LOC590647), mRNA Length = 213 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 aaggagatcaaggagttgg 113 ||||||||||||||||||| Sbjct: 139 aaggagatcaaggagttgg 157
>ref|XM_783289.1| PREDICTED: Strongylocentrotus purpuratus similar to TAO kinase 1 (LOC583376), mRNA Length = 2307 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 aaggagatcaaggagttgg 113 ||||||||||||||||||| Sbjct: 2233 aaggagatcaaggagttgg 2251
>ref|XM_780446.1| PREDICTED: Strongylocentrotus purpuratus similar to TAO kinase 3 (LOC580386), mRNA Length = 1995 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 95 aaggagatcaaggagttgg 113 ||||||||||||||||||| Sbjct: 1921 aaggagatcaaggagttgg 1939
>gb|AC111460.6| Rattus norvegicus BAC CH230-211F21 (Children's Hospital Oakland Research Institute) complete sequence Length = 218573 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 agaaggagatcaaggagtt 111 ||||||||||||||||||| Sbjct: 101768 agaaggagatcaaggagtt 101750
>emb|AJ534335.2|GGA534335 Gallus gallus mRNA for SMC1 protein Length = 3705 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 840 cgagaaggagatcaaggag 858
>emb|AJ011317.1|MSP011317 Methylobacterium chloromethanicum cobD, metF, cmuB, cmuC, partial cobC and cobQ, genes and genes encoding Orf219 and Orf361, strain CM4 Length = 8457 Score = 38.2 bits (19), Expect = 6.7 Identities = 28/31 (90%) Strand = Plus / Minus Query: 14 cgccccctcgacgaggacgacatcgccctcc 44 |||||||||||||| ||||| |||| ||||| Sbjct: 222 cgccccctcgacgacgacgagatcggcctcc 192
>gb|AE012291.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 199 of 460 of the complete genome Length = 11889 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 gaaggagatcaaggagttg 112 ||||||||||||||||||| Sbjct: 9858 gaaggagatcaaggagttg 9840
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 catcgccctcctcaagacc 52 ||||||||||||||||||| Sbjct: 1950426 catcgccctcctcaagacc 1950408
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 25854659 cgagaaggagatcaaggag 25854677
>ref|NM_204516.1| Gallus gallus SMC1 protein cohesin subunit (SMC1), mRNA Length = 3705 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 840 cgagaaggagatcaaggag 858
>gb|AY842844.1| Leishmania tarentolae chromosome 9 J-binding protein 1 (JBP1) gene, complete cds Length = 34527 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 91 cgagaaggagatcaaggagttgg 113 ||||||||||||| ||||||||| Sbjct: 5333 cgagaaggagatcgaggagttgg 5311
>dbj|AK064628.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F08, full insert sequence Length = 843 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 586 cgagaaggagatcaaggag 604
>dbj|AP004009.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_F05 Length = 132708 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 25107 cgagaaggagatcaaggag 25125
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 caagacctacgggcttggg 64 ||||||||||||||||||| Sbjct: 1298132 caagacctacgggcttggg 1298114
>gb|AC005262.1|AC005262 Homo sapiens chromosome 19, cosmid F23990, complete sequence Length = 44235 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 caagacggccgagaaggag 100 ||||||||||||||||||| Sbjct: 14000 caagacggccgagaaggag 13982
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 91 cgagaaggagatcaaggag 109 ||||||||||||||||||| Sbjct: 328379 cgagaaggagatcaaggag 328361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 894,114 Number of Sequences: 3902068 Number of extensions: 894114 Number of successful extensions: 93374 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92649 Number of HSP's gapped (non-prelim): 722 length of query: 140 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 119 effective length of database: 17,151,101,840 effective search space: 2040981118960 effective search space used: 2040981118960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
