ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49a06 |
|---|---|
| Clone Library Name | barley_pub |
>YEIN_ECOLI (P33025) Hypothetical protein yeiN| Length = 312 Score = 162 bits (409), Expect = 9e-40 Identities = 86/165 (52%), Positives = 107/165 (64%) Frame = +3 Query: 96 SPTGVAVSPXXXXXXXXXXXXXXXXSTIICHGMPYPKNLQTAMEVEAIVRENGAVPATIA 275 SP + +SP STII HGMP+P+N QTA+EVE +R+ GAVPATIA Sbjct: 7 SPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQNAQTAIEVEETIRKQGAVPATIA 66 Query: 276 ILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGGNGATTVSATMFFAHKVGIP 455 I+ GV VGL+ E+++ L G K +RRD+ VVA+G NGATTV++TM A GI Sbjct: 67 IIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIK 126 Query: 456 IFVTGGIGGVHRYGEKTMDISSDLTELGKTPVAVISAGVKSILDI 590 +F TGGIGGVHR E T DIS+DL EL T V V+ AG KSILD+ Sbjct: 127 VFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAKSILDL 171
>PNKL_NPVAC (P41476) Putative bifunctional polynucleotide kinase/RNA ligase| [Includes: Polynucleotide kinase (EC 2.7.1.78) (PNK) (Polynucleotide 5'-hydroxy-kinase); RNA ligase (EC 6.5.1.3)] Length = 694 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -2 Query: 545 SLSKFS*VRGDVHGFFTISVYASNSPSHKNWYTNLVSKKHGGRDRRSTIAARSNNLCDIS 366 SL K G+ H S +A N + LV + + + A N D + Sbjct: 107 SLIKIYKYNGEWHASTRGSAFAENLCVSDVTFKRLVLQALQLDEAHNQFQALCNEYLDCA 166 Query: 365 SSCLLKLTSTYSQVLQLFTVKPNMWY 288 S+ + +LTS +++++ ++ +P +WY Sbjct: 167 STHMFELTSKHNRIVTVYDEQPTLWY 192
>DNBI_HHV1K (P17470) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Frame = +3 Query: 225 EVEAIVRENGAVPATIAILDGVPHVGLNSEQLKN---LAISGSQFQKTARRDIAQVVASG 395 ++ I+ E GA A+ + V +G ++QL+ LA+ ++ ++ Sbjct: 1052 QLRGIISEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMELTARALER 1111 Query: 396 GNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGE 500 GNG + A + AH+ + G G V +G+ Sbjct: 1112 GNGEWSTDAALEVAHEAEALVSQLGNAGEVFNFGD 1146
>DNBI_HHV1F (P17469) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Frame = +3 Query: 225 EVEAIVRENGAVPATIAILDGVPHVGLNSEQLKN---LAISGSQFQKTARRDIAQVVASG 395 ++ I+ E GA A+ + V +G ++QL+ LA+ ++ ++ Sbjct: 1052 QLRGIISEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMELTARALER 1111 Query: 396 GNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGE 500 GNG + A + AH+ + G G V +G+ Sbjct: 1112 GNGEWSTDAALEVAHEAEALVSQLGNAGEVFNFGD 1146
>DNBI_HHV11 (P04296) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Frame = +3 Query: 225 EVEAIVRENGAVPATIAILDGVPHVGLNSEQLKN---LAISGSQFQKTARRDIAQVVASG 395 ++ I+ E GA A+ + V +G ++QL+ LA+ ++ ++ Sbjct: 1052 QLRGIISEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMELTARALER 1111 Query: 396 GNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGE 500 GNG + A + AH+ + G G V +G+ Sbjct: 1112 GNGEWSTDAALEVAHEAEALVSQLGNAGEVFNFGD 1146
>SDHD_SHIFL (Q83MK8) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)| (DSD) Length = 442 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +3 Query: 261 PATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGG 398 P+T ++ +G+P+VGL + +++ S+F + A+ A+GG Sbjct: 30 PSTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFAETAATGG 75
>IDI2_SULTO (Q96YW9) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 369 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = +3 Query: 345 QFQKTARRDIAQVVAS--GGNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGEKTMDIS 518 +F T D+ + S G + A + T F K+ PI +TG GG+ G+ I+ Sbjct: 23 EFGSTLFEDVTLIHQSLPGFSLADVSTTTNFLGKKMSAPIIITGMTGGLPELGKINETIA 82 Query: 519 SDLTELG 539 + ELG Sbjct: 83 EVIEELG 89
>PURL_BRUSU (Q8G183) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 740 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = +3 Query: 264 ATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGGNGATTVSATMFFAHK 443 AT+ DG+PH L E IS A ++A+++A GA Sbjct: 652 ATLDAGDGLPHALLFGEDQARYVIS-------ATPEMAKLIALNAEGA------------ 692 Query: 444 VGIPIFVTGGIGGVHRYGEKTMDIS-SDLTE 533 G+P + G +GG K +D+S +DLT+ Sbjct: 693 -GVPFRILGTVGGDRLKISKNVDVSVADLTQ 722
>PURL_BRUME (Q8YGN1) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 740 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = +3 Query: 264 ATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGGNGATTVSATMFFAHK 443 AT+ DG+PH L E IS A ++A+++A GA Sbjct: 652 ATLDAGDGLPHALLFGEDQARYVIS-------ATPEMAKLIALNAEGA------------ 692 Query: 444 VGIPIFVTGGIGGVHRYGEKTMDIS-SDLTE 533 G+P + G +GG K +D+S +DLT+ Sbjct: 693 -GVPFRILGTVGGDRLKISKNVDVSVADLTQ 722
>IMDH3_CANAL (O00086) Probable inosine-5'-monophosphate dehydrogenase (EC| 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) Length = 521 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +3 Query: 378 QVVASGGNGATTVSATMFFAHKVGIPIFVTGGIGGV 485 +V+A G T V FA+K G+P GGIG + Sbjct: 337 EVMACGRPQGTAVYGVTEFANKFGVPCIADGGIGNI 372
>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)| Length = 847 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 315 QLKNLAISGSQFQKTARRDIA-QVVASGGNGATTVSATMFFAH 440 +++ + +SG QF + D+ Q GNGAT S T + H Sbjct: 547 RVRGILMSGKQFSLDSHMDVVVQTTLDAGNGATRTSTTNSYGH 589
>FD5_DROME (P32029) Fork head domain protein FD5| Length = 271 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 499 SPYLCTPPIPPVTKIGIPTL*AKNMVAETVVAPLP 395 SPY TPPI P T +P + E+++AP P Sbjct: 164 SPYKATPPILPTTVTQLPARPKRAFTIESLMAPDP 198
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 5.3 Identities = 17/68 (25%), Positives = 29/68 (42%) Frame = -3 Query: 571 TPAEITATGVFPSSVKSEEMSMVFSPYLCTPPIPPVTKIGIPTL*AKNMVAETVVAPLPP 392 +P T T P++ S ++ +P T P PP T + P+ T + LPP Sbjct: 1690 SPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPP 1749 Query: 391 EATTCAIS 368 T+ ++ Sbjct: 1750 TTTSSPLT 1757
>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain Length = 2035 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Frame = -3 Query: 589 ISKMDFTPAEITATGVFPSSVKSEEMSMVFSPY--LCTPPIPPVTKIGIPTL*AKNMVAE 416 + K D TAT P+ V S + SP P + P+T++GI L Sbjct: 397 LQKYDIPATAATATSPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLL-------- 448 Query: 415 TVVAPLPPEATTCAI 371 AP PP TT + Sbjct: 449 PQAAPAPPTTTTIQV 463
>FLL_PINRA (O04116) Floricaula/leafy-like protein (PRFLL)| Length = 411 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 198 YPKNLQTAMEVEAIVRENGAVPATIAILDGVPHVGLNSEQLK 323 +P NL M+ I++ +G + T++ L G+P SEQ K Sbjct: 189 FPLNLNAGMDPVLILQNSGHLGTTVSGLIGMPDTNYGSEQTK 230
>DNBI_HHV2H (P89452) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Frame = +3 Query: 225 EVEAIVRENGAVPATIAILDGVPHVGLNSEQLKN---LAISGSQFQKTARRDIAQVVASG 395 ++ I+ E GA A+ + V +G ++QL+ LA+ ++ + Sbjct: 1052 QLRGIIAEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMEFTTRALER 1111 Query: 396 GNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGEKTMDISSDLTELGKTPVAVISAGV 572 G+G + A + AH+ + G G V +G+ D G A +AGV Sbjct: 1112 GHGEWSTDAALEVAHEAEALVSQLGAAGEVFNFGD-FGDEDDHAASFGGLAAAAGAAGV 1169
>YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor| Length = 1271 Score = 29.6 bits (65), Expect = 6.9 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%) Frame = +2 Query: 404 CYDGLCHH--VFCSQGWYTNFCD 466 CY+G+C + CS+GWY + CD Sbjct: 70 CYNGVCLNKACVCSKGWYGSQCD 92
>ATF4_MOUSE (Q06507) Cyclic AMP-dependent transcription factor ATF-4| (C/EBP-related ATF) (C/ATF) (TAXREB67 homolog) Length = 349 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +3 Query: 6 EAAVCCLRRNQSRKTQRSPGMSKAPPREDPSPTGVAVSP 122 ++ +C + Q SP S+APP PSP G SP Sbjct: 217 DSGICMSPESYLGSPQHSPSTSRAPPDNLPSPGGSRGSP 255
>DNBI_HHV2 (P36384) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1197 Score = 29.6 bits (65), Expect = 6.9 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 3/95 (3%) Frame = +3 Query: 225 EVEAIVRENGAVPATIAILDGVPHVGLNSEQLKN---LAISGSQFQKTARRDIAQVVASG 395 ++ I+ E GA A+ + V +G ++QL+ LA+ ++ + Sbjct: 1052 QLRGIIAEGGAAVASSVFVATVKSLGPRTQQLQIEDWLALLEDEYLSEEMMEFTTRALER 1111 Query: 396 GNGATTVSATMFFAHKVGIPIFVTGGIGGVHRYGE 500 G+G + A + AH+ + G G V +G+ Sbjct: 1112 GHGEWSTDAALEVAHEAEALVSQLGAAGEVFNFGD 1146
>GLBP3_GLYDI (P21660) Globin, polymeric component P3| Length = 147 Score = 29.3 bits (64), Expect = 9.0 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 314 FTVKPNMWYTIQNGYGGRNRAVLPDDGLHLHGRLQVLRVGHTVA--DDG 174 F P M + GY GR A+ + L HG++ V ++G V+ DDG Sbjct: 36 FDENPQMMFVF--GYSGRTSALKHNSKLQNHGKIIVHQIGQAVSELDDG 82
>GCSP_PROMM (Q7V411) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 962 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = -1 Query: 471 PQSQKLVYQPCEQKTWWQRPS*HHCRPKQQLVRYL 367 P ++LV P Q+ W Q+ H R + +L+RYL Sbjct: 451 PHLEELVGLPLRQRPWLQQQVFHRYRSETELLRYL 485
>SDHD_ECOLI (P00926) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)| (DSD) Length = 442 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = +3 Query: 261 PATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGG 398 P T ++ +G+P+VGL + +++ S+F + + A+GG Sbjct: 30 PGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGG 75
>SDHD_ECOL6 (Q8FFF4) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)| (DSD) Length = 442 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = +3 Query: 261 PATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGG 398 P T ++ +G+P+VGL + +++ S+F + + A+GG Sbjct: 30 PGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAAAGG 75
>SDHD_ECO57 (Q8XCK5) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)| (DSD) Length = 442 Score = 29.3 bits (64), Expect = 9.0 Identities = 12/46 (26%), Positives = 25/46 (54%) Frame = +3 Query: 261 PATIAILDGVPHVGLNSEQLKNLAISGSQFQKTARRDIAQVVASGG 398 P T ++ +G+P+VGL + +++ S+F + + A+GG Sbjct: 30 PGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGG 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,126,396 Number of Sequences: 219361 Number of extensions: 1554330 Number of successful extensions: 5702 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5702 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
