ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart49a04 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2| Length = 925 Score = 36.6 bits (83), Expect = 0.048 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 14/107 (13%) Frame = -2 Query: 331 GNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPV 152 G +G+ A A PG + T A + RP P A R S AP + K Sbjct: 99 GGNGEAAAPPAQPGGT--ATTPAAQATPEAPARPGPAAARPSAPAPGQPKP--------- 147 Query: 151 FPGSARKPRPGKTPN-------ATRSETPRL-------SRPVDRSLP 53 P + PRPG TP + TPR+ ++PVDR +P Sbjct: 148 -PAPGQPPRPGATPGPRPGPAPKPAARTPRVGNNPFSSAQPVDRPIP 193
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 35.8 bits (81), Expect = 0.082 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Frame = -2 Query: 340 NPEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKR 161 +P G +P + P P+R P +S PSP R ++P + Sbjct: 28 SPRDEDGSRSPGERTPSP---PSRDPSPYRSPGERTPSPSPRRDRSLSP---------RD 75 Query: 160 KPVFPGSARKPRP-GKTPN--ATRSETPRLSRP---VDRSLPPRAR 41 +P +R P P ++P+ + RS +PR P VDRS PRAR Sbjct: 76 QPHSHPRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPRAR 121
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 34.7 bits (78), Expect = 0.18 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = -2 Query: 277 PTRAALPGQ--SQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNA 104 P R A P + V+ P RSS + RS L RK P + + PN Sbjct: 621 PKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNK 680 Query: 103 TRSETPRLSRPVDRSLPPRAR 41 S +PR P S PP R Sbjct: 681 RHSPSPRPRAPQTSSSPPPVR 701
>TNR1A_RAT (P22934) Tumor necrosis factor receptor superfamily member 1A| precursor (p60) (TNF-R1) (TNF-RI) (TNFR-I) (p55) Length = 461 Score = 34.3 bits (77), Expect = 0.24 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Frame = -2 Query: 247 QWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGS--ARKPRPGKTPNATRSETPRLSR 74 QW R + R S AP++ + I KP+ P S A P PG P S TPR S Sbjct: 238 QWRPRVYSIICRDS--APVKEVEGEGIVTKPLTPASIPAFSPNPGFNPTLGFSTTPRFSH 295 Query: 73 PV 68 PV Sbjct: 296 PV 297
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 33.9 bits (76), Expect = 0.31 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = -2 Query: 277 PTRAALPGQ--SQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNA 104 P R A P + V+ P RS + RS L RK PG + + PN Sbjct: 640 PKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNK 699 Query: 103 TRSETPRLSRPVDRSLPPRAR 41 S +PR P S PP R Sbjct: 700 RHSPSPRPRAPQTSSPPPVRR 720
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 30.0 bits (66), Expect(2) = 0.35 Identities = 23/87 (26%), Positives = 32/87 (36%) Frame = -2 Query: 310 PVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARK 131 P +PG + +P LPG + + P P+ +S P I P PG+ Sbjct: 613 PPPPLPGGACIPPPPQLPGSAA-IPPPPPLPGVASIPPPPPLPGATAIPPPPPLPGATAI 671 Query: 130 PRPGKTPNATRSETPRLSRPVDRSLPP 50 P P P T P P +PP Sbjct: 672 PPPPPLPGGTGIPPPPPPLPGSVGVPP 698 Score = 22.3 bits (46), Expect(2) = 0.35 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -1 Query: 458 VLPVDPGLPATTPLVLDPPLP 396 V+P P LP T + PPLP Sbjct: 598 VVPPSPPLPPGTCIPPPPPLP 618
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 33.5 bits (75), Expect = 0.41 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 2/81 (2%) Frame = -2 Query: 277 PTRAALPGQ--SQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNA 104 P R A P + V+ P RSS + RS L RK P + + PN Sbjct: 635 PKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNK 694 Query: 103 TRSETPRLSRPVDRSLPPRAR 41 S +PR P S PP R Sbjct: 695 RHSPSPRPRAPQTSSPPPVRR 715 Score = 31.2 bits (69), Expect = 2.0 Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Frame = -2 Query: 277 PTRAALPGQSQWVNRPSP-MAMRSSGIAPIRSKKLGKIKRKPVFPGSARK--PRPGKTPN 107 P+R+A P + SP M M +P+ K G+ +R P P + R+ P P P Sbjct: 525 PSRSASPSPRKRQKETSPRMQMGKRWQSPVT--KSGRRRRSPSPPPTRRRRSPSPAPPPR 582 Query: 106 ATRSETPRLSRPVDRSLPPRAR 41 R+ TP R S PPR R Sbjct: 583 RRRTPTPPPRRRTP-SPPPRRR 603
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 33.1 bits (74), Expect = 0.53 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 17/106 (16%) Frame = -2 Query: 340 NPEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGI------------- 200 +P G S +P +A P +S P P ++ V+ SP++ SG Sbjct: 781 SPRGRSYTRSPDRAGPQASTAPRSGGPPRKAGSVDNRSPLSRSPSGSRSPSPRRRRDSPS 840 Query: 199 -APIRSKKLGKIKRKPVFPGS--ARKPRP-GKTPNATRSETPRLSR 74 +P+R ++ G + PG+ AR+ R ++P+ TRS +P SR Sbjct: 841 RSPVRDRESGG-RAAAAAPGNSEARRGRSYSRSPSRTRSPSPAPSR 885
>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2| Length = 939 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%) Frame = -2 Query: 271 RAALPGQSQWVNRPSPMAMRSSGIA-------PIRSKKLGKIKRKPVFPGSARKPRPG-K 116 + A P + +P+ RS G+ PI+ ++ + +RKP P R PRP Sbjct: 210 KVATPASTDKKVKPAQQPYRSGGVRVIGRVELPIQREEPSRPRRKPTRPPVNRSPRPSTP 269 Query: 115 TPNATRSETPRLSRP 71 +PN + P+ + P Sbjct: 270 SPNRSAGGPPKPAAP 284
>KYE1_KLULA (P40952) NADPH dehydrogenase 1 (EC 1.6.99.1) (Old yellow enzyme 1)| Length = 398 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 225 GLGRFTHWLWPGNAARVGNHEL-PGTALTGASFPEFPSGFREA 350 G F + +W GN RVGN+ L P A+T + P G+ A Sbjct: 307 GTNEFVYSVWKGNVLRVGNYALDPDAAITDSKNPNTLIGYGRA 349
>RNB_HHV2H (P89479) Probable RNA-binding protein| Length = 151 Score = 31.6 bits (70), Expect = 1.5 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 211 SSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPPR 47 S + P R + ++ R+P P R+PR ++P R PR+ R PPR Sbjct: 81 SEAVRPSRIPRAPRVPREPRVPREPREPRVPRSPREPR--VPRIPRDPRPPRPPR 133
>EMAL_CAEEL (O45487) Echinoderm microtubule-associated protein-like elp-1| Length = 891 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -2 Query: 529 DQSESSDSDPERHPPP---SDGTMTMSYSLSILGSPRLRRWFLT 407 + SE P RH PP SDG + +S S GSP +R+W T Sbjct: 127 NNSEEVSPGPPRHRPPTRGSDGMVNVSVGKSARGSP-MRKWVST 169
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 31.2 bits (69), Expect = 2.0 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = -2 Query: 340 NPEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKR 161 N + NSG P VPGS P A Q+ +NRP P M SG P S G+ + Sbjct: 14 NNQQNSG--GPPNFVPGSQGNPNSLAANMQNLNINRPPP-PMPGSGPRP--SPPFGQSPQ 68 Query: 160 KPVFPGSARKPRPGKTPNATRSETP--RLSRP 71 FP ++ +P +P A P ++RP Sbjct: 69 S--FPQQQQQQQPRPSPMARPGPPPPAAMARP 98
>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1 kinase) Length = 806 Score = 30.8 bits (68), Expect = 2.6 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%) Frame = -2 Query: 313 APVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSAR 134 AP++ P +S L +++ +P P + SG + P FP Sbjct: 643 APLQTAPSTSLLASQSLVP----------PSGLPGSGAPEVL----------PYFPSGPP 682 Query: 133 KPRPGKTPNATRSETP-------RLSR-PVDRSLPP 50 P PG TP + SE+P +LS+ V+ LPP Sbjct: 683 PPDPGLTPQPSTSESPDVNLVTQQLSKSQVEDPLPP 718
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 30.4 bits (67), Expect = 3.4 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = -2 Query: 340 NPEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKR 161 +P+ S + +P K+ S PG PSP RS +P+ S + K Sbjct: 235 SPKAKSSRRSPAKSTSRS---------PGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSK- 284 Query: 160 KPVFPGSARKPRPGKTPNATRS 95 S KP P K+P TRS Sbjct: 285 ------SPSKPSPAKSPIHTRS 300
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 30.4 bits (67), Expect = 3.4 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 18/109 (16%) Frame = -2 Query: 322 GKEAPVKAVPGSSWLPTRAALPGQS-QWVNRPSPMAMRSSGIAPIRSKKLGKIKRKP--- 155 G AP A P +S P R A P Q+ + + P + SG +P ++ G ++ P Sbjct: 537 GPGAPPAARPPASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQRQGPPQKPPGPA 596 Query: 154 --------------VFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPP 50 P + ++PRP A R P+L++ + +PP Sbjct: 597 GPIRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPTKPQLAQKPSQDVPP 645
>GAB2_MOUSE (Q9Z1S8) GRB2-associated-binding protein 2 (GRB2-associated binder| 2) (PH domain-containing adaptor molecule p97) Length = 665 Score = 30.4 bits (67), Expect = 3.4 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Frame = -3 Query: 261 YPARASG*IGPAPWP*EAPGSLRSDQKNWAKSNENRCSLD-----LLENRDPARLQTQRE 97 YPAR SG A W E PG + N A S++N ++ LL P + Sbjct: 408 YPARGSG--ESASWSAEPPGKTAVGRSNSASSDDNYVPMNPGSSTLLAMERPG--DNSQS 463 Query: 96 AKPPASPGPSIDRSLPVPGSRL 31 P SPGP L P + L Sbjct: 464 VYIPMSPGPHHFDPLGYPSTAL 485
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.4 bits (67), Expect = 3.4 Identities = 25/80 (31%), Positives = 32/80 (40%) Frame = -2 Query: 310 PVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARK 131 PVKAV G LP+ +A P + R P A+ P LG KP PG+ Sbjct: 1283 PVKAVAG---LPSGSAGPSPAPSPARQPPAALAKPPGTP---PSLGASPAKPPSPGAPAL 1336 Query: 130 PRPGKTPNATRSETPRLSRP 71 P K P A + + P Sbjct: 1337 HVPAKPPRAAAAAAAAAAAP 1356
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.4 bits (67), Expect = 3.4 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 18/109 (16%) Frame = -2 Query: 322 GKEAPVKAVPGSSWLPTR-AALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKP--- 155 G AP A P +S P R A P ++ + P ++SG P ++ G ++ P Sbjct: 539 GPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPTKASGAPPGGQQRQGPPQKPPGPA 598 Query: 154 --------------VFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPP 50 P + ++PRP A R P+L++ + +PP Sbjct: 599 GPTRQASQAGPGPRTGPPTTQQPRPSGPGPAGRPAKPQLAQKPSQDVPP 647
>MYCB2_MOUSE (Q7TPH6) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4711 Score = 30.0 bits (66), Expect = 4.5 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -2 Query: 337 PEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSG--IAPIRSKKLGKIK 164 P G G A + S R+ +S N + ++S G + R++ G Sbjct: 2792 PRGTEGLSASESLMLKSDAAKLRSDSHSRSLSPNHNTLQTLKSDGRTSSGFRAESPGPGS 2851 Query: 163 RKPVFPGSARKPRPGKTPNATRS--ETPRLSRPVDRSLPPRA 44 R S+ KP+P TP ++ S +PR S P D++LP ++ Sbjct: 2852 RS-----SSPKPKPLPTPRSSPSGASSPRSSSPQDKNLPQKS 2888
>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)| Length = 706 Score = 30.0 bits (66), Expect = 4.5 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 18/111 (16%) Frame = -2 Query: 322 GKEAPVKAVPGSSWLPTRAALPGQSQWVNRPSPMAM-RSSGIAPIRSKKLGKIKRKP--- 155 G AP P +S P R A P Q+ S A ++SG+ P ++ G ++ P Sbjct: 539 GPGAPPATRPPASPSPQRQAGPPQATRQTSVSGQAPPKASGVPPGGQQRQGPPQKPPGPA 598 Query: 154 --------------VFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPPRA 44 P + ++PRP A R P+L++ + +PP A Sbjct: 599 GPTRQASQAGPMPRTGPPTTQQPRPSGPGPAGRPTKPQLAQKPSQDVPPPA 649
>DEXB_STRMU (Q99040) Glucan 1,6-alpha-glucosidase (EC 3.2.1.70) (Dextran| glucosidase) (Exo-1,6-alpha-glucosidase) (Glucodextranase) Length = 536 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = +3 Query: 126 LGFRADPGNTGFRLILPNFFDLIGAIPELLMAMGLGRFTHWLWPGNAARVGNHELPGTAL 305 + F D G GFR+ + D+IG IP + + +L NAA G H+L Sbjct: 180 MNFWIDKGIGGFRM---DVIDMIGKIPAQHIVSNGPKLHAYLKEMNAASFGQHDLLTVGE 236 Query: 306 TGASFPE 326 T + PE Sbjct: 237 TWGATPE 243
>CT174_HUMAN (Q5JPB2) Protein C20orf174| Length = 1082 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/66 (33%), Positives = 29/66 (43%) Frame = -2 Query: 262 LPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNATRSETPR 83 LP W R S ++ SSG R+ +G P+ P A P PG+ + E P Sbjct: 357 LPLPIPWGPRHSQDSLCSSGWPEERASFVGSGLGTPLSPSPASGPSPGEADSIL--EDPS 414 Query: 82 LSRPVD 65 SRP D Sbjct: 415 CSRPQD 420
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 29.6 bits (65), Expect = 5.9 Identities = 21/79 (26%), Positives = 39/79 (49%) Frame = -2 Query: 277 PTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNATR 98 PT+ LP Q+ + +P P+ P+ +L + + +P P + P+P P+ + Sbjct: 290 PTQPVLPPQTI-IQQPQPLIQPP----PLVQSQLPQQQPQPPQPQQQQGPQPQAQPHQVQ 344 Query: 97 SETPRLSRPVDRSLPPRAR 41 S+ P+L +R + PR R Sbjct: 345 SQQPQLQ---NRWVAPRNR 360
>DNMT1_HUMAN (P26358) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1)| (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT) (M.HsaI) Length = 1616 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 195 RSDQKNWAKSNENRCSLDLLENRDPARLQTQREAKPPASPGPSIDR 58 RS+ + ++ N L + R P R ++ EAKP SP P I R Sbjct: 114 RSEARRVGMADANSPPKPLSKPRTPRRSKSDGEAKPEPSPSPRITR 159
>Y934_PORGI (Q7MVU9) UPF0313 protein PG0934| Length = 634 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = -1 Query: 200 RSDQIKKIGQNQTKTGVPWICSKTETRQDSKRNEKRNPPPLQARRS 63 + ++ KI + + G P + +K R S RN++ PP Q R+S Sbjct: 582 KREEADKIRRELHRIGRPDLIAKLFDRTTSSRNDRHTPPSTQPRKS 627
>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)| Length = 1305 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 262 LPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNATRSETPR 83 LP + W R + RS+ + G ++ P G K +PGK +A R PR Sbjct: 12 LPWGASWAGRGQTLRARSTD--SLDGPGEGSVQPVPTTGGPGTKGKPGKRLSAPRGPFPR 69 Query: 82 LS 77 L+ Sbjct: 70 LA 71
>CREA_COCCA (Q9HFS2) DNA-binding protein creA (Carbon catabolite repressor)| Length = 430 Score = 29.6 bits (65), Expect = 5.9 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 14/102 (13%) Frame = -2 Query: 289 SSWLPTRAALPGQSQWVNRPSPMAM-RSSGIAPIRSKKLGKIKR----------KPVFPG 143 S + P LPG SQ+ PM+ S S ++ K R P F Sbjct: 245 SGYHPYANRLPGLSQYAYSSQPMSRSHSHEDDDPYSHRMTKKSRPGSPSSTAPPSPTFSH 304 Query: 142 SARKPRPGKTPNATRSETPRLSRP---VDRSLPPRARIQINK 26 + P P TP AT + +PRL RP D LP + +N+ Sbjct: 305 DSCSPTPDHTPLATPAHSPRL-RPHGFSDLQLPHLRHLSLNQ 345
>CRE1_NEUCR (O59958) DNA-binding protein cre-1 (Carbon catabolite repressor)| Length = 430 Score = 29.6 bits (65), Expect = 5.9 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 157 PVFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPPRARIQINKE 23 P F + P P TP AT + +PRL LPP + + ++ Sbjct: 300 PTFSHDSLSPTPDHTPLATPAHSPRLRPHPGLELPPFRNLSLGQQ 344
>IF2_SYNEL (Q8DK04) Translation initiation factor IF-2| Length = 957 Score = 29.6 bits (65), Expect = 5.9 Identities = 29/107 (27%), Positives = 37/107 (34%), Gaps = 7/107 (6%) Frame = -2 Query: 340 NPEGNSGKEAPVKAVPGSSWLPTRAALPGQ--SQWVNRPSPMAMRSSGI-----APIRSK 182 +P S PVK P A+ Q S+ P P + AP R Sbjct: 61 SPRKVSKTSPPVKKAPAPQKTQQIVAVHTQPRSETPEAPKPQLQKPPARPQPPQAPTRPT 120 Query: 181 KLGKIKRKPVFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPPRAR 41 + KPV P +A+ P P P P RPV +PP R Sbjct: 121 PPAPVAPKPVEPVAAKPPAPPAKPE------PTPPRPVPTLVPPPTR 161
>SAMD6_HUMAN (Q68DC2) Sterile alpha motif domain-containing protein 6 (Ankyrin| repeat domain-containing protein 14) Length = 871 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -2 Query: 208 SGIAPIRSKKLGKIKRKPVFPGSARKPRPGKTPNATRSETPRLSRPVDRSLPPRAR 41 S IA R K G +++KP S P PG +P+ + S PV + L R Sbjct: 666 SQIAAQRKKAAGLLEQKPSHRSSPVGPAPGSSPSELPASPAGGSAPVGKKLETSKR 721
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 29.3 bits (64), Expect = 7.7 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Frame = -3 Query: 213 EAPGSLRSDQKNWAKSNENRCSLDLLENRDPARLQT-----QREAKPPASPGPSIDRSLP 49 + P ++ +DQK +S + + +L + P+ + ++E KPPA+ P ++ P Sbjct: 1089 KTPPAVATDQK-LEESEVTKSLVSVLPEKKPSEEEKALPADKKEKKPPAAEAPPLEEKKP 1147 Query: 48 VPGSRLIKNSATRS 7 +P + + A S Sbjct: 1148 IPDDQKLPPDAKPS 1161
>FGD1_HUMAN (P98174) FYVE, RhoGEF and PH domain-containing protein 1| (Faciogenital dysplasia 1 protein) (Zinc finger FYVE domain-containing protein 3) (Rho/Rac guanine nucleotide exchange factor FGD1) (Rho/Rac GEF) Length = 961 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = -2 Query: 259 PGQSQWVNRPSPMAMRSSGIAPIR--SKKLGKIKRKPVFPGSARKPRPGKTPNATRSETP 86 PGQS + P +RS P S++ +KR P P+P P + + P Sbjct: 119 PGQSLEPHPEGPQRLRSDPGPPTETPSQRPSPLKRAP-------GPKPQVPPKPSYLQMP 171 Query: 85 RLSRPVDRSLPPRAR 41 R+ P++ PP +R Sbjct: 172 RMPPPLEPIPPPPSR 186
>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS| basic-helix-loop-helix leucine zipper protein) (WS-bHLH) (Mlx interactor) (MLX-interacting protein-like) Length = 852 Score = 29.3 bits (64), Expect = 7.7 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 3/91 (3%) Frame = -2 Query: 307 VKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKP 128 V PG S LP AA P Q V P+P PI LG +P F P Sbjct: 440 VPPAPGVSPLPAPAAFPPTPQSVPSPAPTPF------PIELLPLG--YSEPAFGPCFSMP 491 Query: 127 R---PGKTPNATRSETPRLSRPVDRSLPPRA 44 R P +P ++ P L+ P S P A Sbjct: 492 RGKPPAPSPRGQKASPPTLA-PATASPPTTA 521
>NBN_BRARE (Q5I2W8) Nibrin (Nijmegen breakage syndrome protein 1 homolog)| Length = 818 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/71 (26%), Positives = 32/71 (45%) Frame = -1 Query: 275 NSRGVTRPEPVGESAQPHGHEKLRDRSDQIKKIGQNQTKTGVPWICSKTETRQDSKRNEK 96 NS ++ + V ES G + + S I+ + ++ V T QD++ K Sbjct: 592 NSEQLSNQQEVTESKGRKGEKNQQSSSSNIQSMQLDRAGPAV--------TNQDTQTQSK 643 Query: 95 RNPPPLQARRS 63 R+PP L+A S Sbjct: 644 RSPPDLEAHSS 654
>PDPK1_HUMAN (O15530) 3-phosphoinositide-dependent protein kinase 1 (EC| 2.7.11.1) (hPDK1) Length = 556 Score = 29.3 bits (64), Expect = 7.7 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Frame = -2 Query: 265 ALPGQSQWV--NRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPRP--GKTPNATR 98 A+P QS V + PSP +R+ + G ++ P G+A +PRP G +A Sbjct: 11 AVPIQSSVVLCSCPSPSMVRTQTESSTPPGIPGGSRQGPAMDGTAAEPRPGAGSLQHAQP 70 Query: 97 SETPRLSRPVD 65 PR RP D Sbjct: 71 PPQPRKKRPED 81
>THD1_MYCTU (P66897) Probable threonine dehydratase biosynthetic (EC 4.3.1.19)| (Threonine deaminase) Length = 429 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 441 RIDREYDMVIVPSDGGGCLSG 503 +++ E D+V+VP GGGC++G Sbjct: 183 QLEDEPDLVVVPVGGGGCIAG 203
>THD1_MYCBO (P66898) Probable threonine dehydratase biosynthetic (EC 4.3.1.19)| (Threonine deaminase) Length = 429 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 441 RIDREYDMVIVPSDGGGCLSG 503 +++ E D+V+VP GGGC++G Sbjct: 183 QLEDEPDLVVVPVGGGGCIAG 203
>THD1_MYCLE (Q9X7F1) Probable threonine dehydratase biosynthetic (EC 4.3.1.19)| (Threonine deaminase) Length = 427 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 441 RIDREYDMVIVPSDGGGCLSG 503 +++ E D+V+VP GGGC++G Sbjct: 180 QLNTEPDLVVVPVGGGGCIAG 200
>HEM6_TOBAC (Q42946) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 397 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 10/50 (20%) Frame = +3 Query: 33 IWIRARGGSDRSTGL------ERRGVSLLVAFGVLPGLGFRA----DPGN 152 +W R GG S+ L E+ GV++ V +GV+P +RA D GN Sbjct: 122 VWSRPGGGGGHSSVLQDGAVFEKAGVNVSVVYGVMPPEAYRAARPTDNGN 171
>YK61_CAEEL (P34340) Putative cuticle collagen C29E4.1| Length = 305 Score = 29.3 bits (64), Expect = 7.7 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -2 Query: 337 PEGNSGKEAPVKAVPGSSWLPTRAALPGQSQWVNRP 230 P+G G + P +PG+++ P PG+ W+ +P Sbjct: 188 PKGFDGADGP-DGMPGTAYFPGAVGQPGEPGWLGQP 222
>DEXB_STREQ (Q59905) Glucan 1,6-alpha-glucosidase (EC 3.2.1.70) (Dextran| glucosidase) (Exo-1,6-alpha-glucosidase) (Glucodextranase) Length = 537 Score = 29.3 bits (64), Expect = 7.7 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = +3 Query: 126 LGFRADPGNTGFRLILPNFFDLIGAIPELLMAMGLGRFTHWLWPGNAARVGNHELPGTAL 305 + F G GFR+ + DLIG IP+ + R +L N A GNH++ Sbjct: 180 MNFWIAKGIGGFRM---DVIDLIGKIPDSEITGNGPRLHDYLKEMNQATFGNHDVMTVGE 236 Query: 306 TGASFPE 326 T + PE Sbjct: 237 TWGATPE 243
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 24.6 bits (52), Expect(2) = 9.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -2 Query: 310 PVKAVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAPI 191 PV +VP + LP + +P + P P M SG API Sbjct: 228 PVPSVPPMTTLPPMSGMPPLNPPPVAPLPAGMNGSG-API 266 Score = 22.7 bits (47), Expect(2) = 9.0 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = -1 Query: 455 LPVDPGLPATTPLVLDPPLP 396 +P P LP+ P+ + PP+P Sbjct: 196 MPSLPPLPSIPPIPVPPPVP 215
>YLB8_CAEEL (P46582) Hypothetical protein C34E10.8| Length = 1024 Score = 28.9 bits (63), Expect = 10.0 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Frame = -2 Query: 277 PTRAALPGQSQWVNRPSPMAMRSSGIAPIRSKKLG----KIKRKPVFPGSARKPRPGKTP 110 P ++ PG S R + IAP R+ G + +P + RPG TP Sbjct: 600 PPKSPQPGTSSQTFRSQASRLP---IAPHRAIAAGLNPADVGTRPAYRSQMAGQRPGMTP 656 Query: 109 NATRSETPRLSRPVDRSLPPRARIQINKELR 17 +A + +S P S+ P A Q + +R Sbjct: 657 SAQQGSPQLISPPRQGSMMPVAMNQSPQAVR 687
>COX1_CYACA (P48867) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 526 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +3 Query: 165 LILPNFFDLIGAIPELLMAMGLGRFTHWLWPGNAARVGNHELPGTALT 308 LI F L+GA LLM + L PGN +GNH+L +T Sbjct: 22 LIFGAFSGLLGASISLLMRIELSH------PGNQVLIGNHQLYNVLVT 63
>RIBD_CHLMU (Q9PLJ6) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 371 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Frame = -1 Query: 269 RGVTRPEPVGESAQPH-GHEKLRDRSDQIKKIGQNQTKTGVPWICSKTETRQDSKRNEKR 93 RGV R + G S GHE+ + +Q +TG+PW+ KT D + +++R Sbjct: 115 RGVARLKEAGISVYVGIGHEEAKASLQPYL----HQRETGLPWVVMKTAASLDGQTSDRR 170
>SCMH1_MOUSE (Q8K214) Polycomb protein SCMH1 (Sex comb on midleg homolog 1)| Length = 706 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 5/79 (6%) Frame = -2 Query: 256 GQSQWVNRPSPMAMRSSGIAPIRSKKLGKIKRKPVFPGSARKPR-----PGKTPNATRSE 92 G++ + P P + S P++ K KR P PGS RKPR P +P + E Sbjct: 281 GRTPKILIPHPTSTPSKSAEPLKFPK----KRGPK-PGSKRKPRTLLSPPPTSPTTSTPE 335 Query: 91 TPRLSRPVDRSLPPRARIQ 35 + P D + P + +Q Sbjct: 336 PDTSTVPQDAATVPSSAMQ 354
>LEU2_AZOSE (Q5P1J8) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 469 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = -3 Query: 120 ARLQTQREAKPPA---SPGPSIDRSLPVPGSRLIKNSA 16 +R++ REA A S PS+ R L VPGS L+K A Sbjct: 352 SRIEDLREAASVAKGRSKAPSVKRVLVVPGSGLVKRQA 389
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B)| (XIRS-L') Length = 1088 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Frame = -1 Query: 278 ANSRGVTRPEPVGESAQPHGHEKLRDR--SDQIKKIGQNQTKTGVPWICSKTETRQDSKR 105 A + T P G +A+ HG R R SD + + + G P S + T+ R Sbjct: 298 ARTESATATSPAGGAAK-HGSSSFRVRASSDGEGTMSRPASMEGSPVSPSASRTQSHRHR 356 Query: 104 NEKRNPPPLQARRSI 60 R PPL RSI Sbjct: 357 GSSRLHPPLNHSRSI 371
>SYC1_STRCO (Q9L0Q6) Cysteinyl-tRNA synthetase 1 (EC 6.1.1.16) (Cysteine--tRNA| ligase 1) (CysRS 1) Length = 613 Score = 28.9 bits (63), Expect = 10.0 Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 6/93 (6%) Frame = -2 Query: 301 AVPGSSWLPTRAALPGQSQWVNRPSPMAMRSSGIAP---IRSKKLGKIKRKPVFPG---S 140 + PG +PT G + RP AP + ++ K R+P P Sbjct: 24 SAPGPRPMPTHHPTRGDKKRARRPGVPTRGDKKRAPRLGVPARGDKKRARRPGVPAREDK 83 Query: 139 ARKPRPGKTPNATRSETPRLSRPVDRSLPPRAR 41 R PRPG + PRL P R RAR Sbjct: 84 KRAPRPGVPTRGDKKRAPRLGVPA-RGDKKRAR 115
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 28.9 bits (63), Expect = 10.0 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Frame = -1 Query: 278 ANSRGVTRPEPVGESAQPHGHEKLRDR--SDQIKKIGQNQTKTGVPWICSKTETRQDSKR 105 A + T P G +A+ HG R R SD + + + G P S + T+ R Sbjct: 95 ARTESATATSPAGGAAK-HGSSSFRVRASSDGEGTMSRPASMEGSPVSPSASRTQSHRHR 153 Query: 104 NEKRNPPPLQARRSI 60 R PPL RSI Sbjct: 154 GSSRLHPPLNHSRSI 168
>COX1_PHYME (Q02211) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 492 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +3 Query: 165 LILPNFFDLIGAIPELLMAMGLGRFTHWLWPGNAARVGNHELPGTALTGASF 320 LI F ++G LL+ M L + PGN +GNH+L +T +F Sbjct: 27 LIFSAFAGIVGTTLSLLIRMELAQ------PGNQIFMGNHQLYNVVVTAHAF 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,142,824 Number of Sequences: 219361 Number of extensions: 1532619 Number of successful extensions: 7690 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 6911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7643 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
