ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48g06 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 126 bits (317), Expect = 4e-29 Identities = 68/157 (43%), Positives = 93/157 (59%), Gaps = 1/157 (0%) Frame = +2 Query: 95 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDXXXXXXXXXXXXXXX 271 ++VT+LS+DGGG++GIIPA +L FLE +LQ++D DAR+ADYFD Sbjct: 27 EMVTVLSIDGGGIKGIIPATILEFLEGQLQEVDNNTDARLADYFDVIGGTSTGGLLTAMI 86 Query: 272 XXPDKDGRPLFDGKDLAKFYIDESPKIFPQNCRGSIFSKIGSGLATVTGPKYDGKYLHSL 451 P++ RP KD+ FY + PKIF + GSIF GPKYDGKYL + Sbjct: 87 TTPNETNRPFAAAKDIVPFYFEHGPKIFQSS--GSIF-----------GPKYDGKYLMQV 133 Query: 452 LRRHLGDTKLDGALTSVVIPAFDIAHLQPIIFSSFQL 562 L+ LG+T++ ALT V I +FDI +P+IF+ L Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNL 170
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 126 bits (317), Expect = 4e-29 Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Frame = +2 Query: 95 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDXXXXXXXXXXXXXXX 271 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFD Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 272 XXPDKDGRPLFDGKDLAKFYIDESPKIFPQNCRGSIFSKIGSGLATVTGPKYDGKYLHSL 451 P+++ RP KD+ FY + P IF N GSIF GP+YDGKYL + Sbjct: 87 TTPNENNRPFAAAKDIVPFYFEHGPHIF--NYSGSIF-----------GPRYDGKYLLQV 133 Query: 452 LRRHLGDTKLDGALTSVVIPAFDIAHLQPIIFSSFQL 562 L+ LG+T++ ALT V I +FDI +P+IF+ L Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNL 170
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 126 bits (317), Expect = 4e-29 Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 1/157 (0%) Frame = +2 Query: 95 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDXXXXXXXXXXXXXXX 271 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFD Sbjct: 18 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 77 Query: 272 XXPDKDGRPLFDGKDLAKFYIDESPKIFPQNCRGSIFSKIGSGLATVTGPKYDGKYLHSL 451 P+++ RP KD+ FY + P IF N GSIF GP+YDGKYL + Sbjct: 78 TTPNENNRPFAAAKDIVPFYFEHGPHIF--NYSGSIF-----------GPRYDGKYLLQV 124 Query: 452 LRRHLGDTKLDGALTSVVIPAFDIAHLQPIIFSSFQL 562 L+ LG+T++ ALT V I +FDI +P+IF+ L Sbjct: 125 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNL 161
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 123 bits (308), Expect = 4e-28 Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Frame = +2 Query: 95 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDXXXXXXXXXXXXXXX 271 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFD Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 272 XXPDKDGRPLFDGKDLAKFYIDESPKIFPQNCRGSIFSKIGSGLATVTGPKYDGKYLHSL 451 P+++ RP KD+ FY + P IF N GSI GP YDGKYL + Sbjct: 87 TTPNENNRPFAAAKDIVPFYFEHGPHIF--NYSGSII-----------GPMYDGKYLLQV 133 Query: 452 LRRHLGDTKLDGALTSVVIPAFDIAHLQPIIFSSFQL 562 L+ LG+T++ ALT V I +FDI +P+IF+ L Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNL 170
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 123 bits (308), Expect = 4e-28 Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 1/157 (0%) Frame = +2 Query: 95 KVVTILSVDGGGVRGIIPAIVLAFLEKELQKLDG-PDARIADYFDXXXXXXXXXXXXXXX 271 ++VT+LS+DGGG++GIIPAI+L FLE +LQ++D DAR+ADYFD Sbjct: 27 EMVTVLSIDGGGIKGIIPAIILEFLEGQLQEVDNNKDARLADYFDVIGGTSTGGLLTAMI 86 Query: 272 XXPDKDGRPLFDGKDLAKFYIDESPKIFPQNCRGSIFSKIGSGLATVTGPKYDGKYLHSL 451 P+++ RP KD+ FY + P IF N GSI GP YDGKYL + Sbjct: 87 TTPNENNRPFAAAKDIVPFYFEHGPHIF--NYSGSIL-----------GPMYDGKYLLQV 133 Query: 452 LRRHLGDTKLDGALTSVVIPAFDIAHLQPIIFSSFQL 562 L+ LG+T++ ALT V I +FDI +P+IF+ L Sbjct: 134 LQEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNL 170
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.0 bits (71), Expect = 1.3 Identities = 20/80 (25%), Positives = 27/80 (33%) Frame = +1 Query: 265 GAHSAGQGWPAAVRRQGPGQVLHRRVAQNLPTELQGLHLLQDRLGSGDGDRAKVRRQVPP 444 G H +G G + + G G + QG H S G RQ Sbjct: 349 GQHESGSGQSSGYSKHGSGSG---------HSSSQGQHGSTSGQASSSGQHGSSSRQSSS 399 Query: 445 FAAPSAPRRHEAGRGSHQRG 504 + + RH +GRG H G Sbjct: 400 YGQHESASRHSSGRGQHSSG 419
>NFASC_HUMAN (O94856) Neurofascin precursor| Length = 1347 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 289 WPAAVRRQG--PGQVLHRRVAQNLPTELQGLHLLQDRLGSGDGDRAKVRRQVPPFAAPSA 462 W + R+Q PG L V++ P L ++ G GDG R++ + P PSA Sbjct: 876 WVSQKRQQASFPGDRLRGVVSRLFPYSNYKLEMVVVN-GRGDGPRSETKEFTTPEGVPSA 934 Query: 463 PRR 471 PRR Sbjct: 935 PRR 937
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 31.2 bits (69), Expect = 2.1 Identities = 36/161 (22%), Positives = 66/161 (40%) Frame = -3 Query: 525 AISKAGITTLVRAPSSFVSPRCRRSSEWRYLPSYFGPVTVARPEPILEKMEPLQFCGKIL 346 ++S+ G TT+V SS + P S PVT Sbjct: 143 SLSEVGTTTVVS--SSAIEPSSA---------SIISPVTSTLSSTTSSNPTTTSLSSTST 191 Query: 345 GDSSM*NLARSLPSNSGRPSLSGAVSTTVKRPPVLVPATTSK*SAILASGPSNFWSSFSR 166 SS S ++S S S + ++T P++TS S++ ++ S+ +S S+ Sbjct: 192 SPSSTSTSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSS--TSTSQ 249 Query: 165 KARTMAGMIPLTPPPSTLRMVTTFAWSPAAITLEFANTSTS 43 + + + T P ST ++ + SP++ + ++TSTS Sbjct: 250 SSTSTSSSSTSTSPSSTSTSSSSTSTSPSSKSTSASSTSTS 290
>DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precursor (Dentin| matrix protein 1) (DMP-1) Length = 510 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Frame = -2 Query: 352 DFGRLVDVELGQVLAVEQRPAILVRRCEHH----RQEAPGARAGDDIEVVRDPSIRPVQF 185 D R ++V + + A L + EH RQE+ R+ +D + V+DPS Q Sbjct: 284 DDSRTIEVMSDSTENPDSKEAGLGQSREHSKSESRQESEENRSPEDSQDVQDPSSESSQE 343 Query: 184 LELLFKESEDDGRDDSSHAAAVDAQD 107 ++L +E+ + ++++ H + D D Sbjct: 344 VDLPSQENSSESQEEALHESRGDNPD 369
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 30.8 bits (68), Expect = 2.8 Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 15/98 (15%) Frame = +1 Query: 253 PLDGGAHSAGQGWPAA-VRR---------QGPGQVLHRRVAQNLPTEL-QGLHLLQDRLG 399 PLD +HS G AA V+R P V R A P + LHL Sbjct: 190 PLDPRSHSTGGVQLAAPVQRLRPLAERAIMPPRPVQPSRPAAAAPARNNETLHLRSGAAA 249 Query: 400 SGDGDRAKVRRQVPPFAAPSAPRRHEA----GRGSHQR 501 GD +R R+ P A P+ PRR A G GS +R Sbjct: 250 GGDDERRPAPRRSGPGAPPAPPRRPSAPSRKGGGSDRR 287
>NIR_NEUCR (P38681) Nitrite reductase [NAD(P)H] (EC 1.7.1.4)| Length = 1176 Score = 30.4 bits (67), Expect = 3.6 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Frame = -2 Query: 340 LVDVEL-GQVLAVEQRPAILVRRCEHHRQEA--PGARAGDDIEVVRDPSIRPVQFLELLF 170 L+D+++ G+V+ +E+ +L R+ + G R G +EV+ ++ V+ Sbjct: 201 LMDLQVFGRVVVIERNGWVLSRQVDGEAGALVLEGVR-GLGVEVLTRKRVKEVEC----- 254 Query: 169 KESEDDGRDDSSHAAAVDAQDGHHLRLVTCCHHFGV 62 ES+D+G + + +DG +L T C G+ Sbjct: 255 DESKDEGEKEKKRVKGIRFEDGEYLACSTICFAIGI 290
>KLCA2_ECOLI (P52603) Antirestriction protein klcA| Length = 146 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 501 TLVRAPSSFVSPRCRRSSEWRYLPSYFGP 415 T V+ PS V+ R + R+LP+YFGP Sbjct: 2 TDVQIPSPIVATRVAEADRLRFLPTYFGP 30
>ZN509_HUMAN (Q6ZSB9) Zinc finger protein 509| Length = 765 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +1 Query: 340 VAQNLPTELQGLHLLQDRLGSGDGDRAKVRRQVPPFAAPSAPRRHEAGRGSHQRGD 507 +++N P HLLQ+ S D + K + P A+PS R H AG S Q D Sbjct: 148 ISENYPP-----HLLQEC--SADAQQNKTLDESHPHASPSVNRHHSAGEISKQAPD 196
>IDI_BRELN (Q9KK75) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 182 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%) Frame = -1 Query: 356 GRFWATRRC---RTWPGPCRRTAAGHPCP 279 GR TRR RTWPG + GHP P Sbjct: 42 GRLLVTRRALKKRTWPGVWTNSFCGHPAP 70
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 4.8 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Frame = -3 Query: 288 SLSGAVSTTVKRPPVLVPA-TTSK*SAILASGPSNFWSSFSRKARTMAGMIPLTPPPSTL 112 +L A+ T PP A TT+ L+ PS S R P PST+ Sbjct: 4240 TLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSPPGTPTRGTTTGSSSAPTPSTV 4299 Query: 111 RMVTTFAWSPAAITL 67 + TT AW+P L Sbjct: 4300 QTTTTSAWTPTPTPL 4314
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 556 EAGEDDGLQVGDIEGR-DHHAGESPVQLRVAEVPTEQRME 440 EAGE+DGL G EG D GE V + ++P E ++ Sbjct: 13 EAGEEDGLYPGGEEGESDGEPGERQVDGGLEDIPEEMEVD 52
>PDR13_ORYSA (Q8S628) Pleiotropic drug resistance protein 13| Length = 1441 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/52 (32%), Positives = 28/52 (53%) Frame = +2 Query: 368 RGSIFSKIGSGLATVTGPKYDGKYLHSLLRRHLGDTKLDGALTSVVIPAFDI 523 RG I S++G + GP +DG +H L+++LG + T V+ AF + Sbjct: 1373 RGVITSQLGDVDTRIVGPGFDGT-VHEFLQQNLGFEQGMTGATVAVLVAFSV 1423
>PALST_EUGGR (P84739) Photoactivated adenylate cyclase alpha-subunit-like protein| ST- Length = 1019 Score = 29.3 bits (64), Expect = 8.1 Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 14/99 (14%) Frame = +1 Query: 295 AAVRRQGPGQVLHRRVAQNLPTEL---------QGLHLLQ-----DRLGSGDGDRAKVRR 432 A R G V+ V+ L +L +GLH + R+G G + + Sbjct: 745 ALTREAGRAIVITEPVSDRLSAKLRDTGIVPCQEGLHAVLLWYPGPRMGIGCANHQEDHL 804 Query: 433 QVPPFAAPSAPRRHEAGRGSHQRGDPGLRYRPPAAHHLL 549 +VP P RHE G HQR PG RP H L Sbjct: 805 RVPRRPGPG---RHEEGGRRHQRPGPG---RPRRGHPFL 837
>CS021_PONPY (Q5RBH3) Protein C19orf21 homolog| Length = 685 Score = 29.3 bits (64), Expect = 8.1 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 565 LQLEAGEDDGLQVGDIEGRDHHAG 494 L LE GED+GL+V + RD H G Sbjct: 82 LHLETGEDEGLKVYRLGARDAHQG 105
>CDC37_HUMAN (Q16543) Hsp90 co-chaperone Cdc37 (Hsp90 chaperone protein| kinase-targeting subunit) (p50Cdc37) Length = 378 Score = 29.3 bits (64), Expect = 8.1 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 14/76 (18%) Frame = +1 Query: 304 RRQGPGQVLHRRVAQNLPTELQ------GLHLLQDRLGSGDGDRAKVRRQ--------VP 441 +R GPG + V ++LP ELQ + +LQD + D AK Q VP Sbjct: 285 KRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVP 344 Query: 442 PFAAPSAPRRHEAGRG 489 A A EAG G Sbjct: 345 NSKASEAKEGEEAGPG 360 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,690,919 Number of Sequences: 219361 Number of extensions: 1675646 Number of successful extensions: 6276 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6265 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
