Clone Name | bart48f12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 996 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 278 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 337 Query: 300 acacgcgcgtggtgaa 315 |||||||||||||||| Sbjct: 338 acacgcgcgtggtgaa 353 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 27 tcgaccccgactacctctactttctccgccac 58 |||||||||||||||||||||| ||||||||| Sbjct: 44 tcgaccccgactacctctacttcctccgccac 75 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 176 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 235 Query: 213 aagagagggactcgtccgtggagg 236 | |||| ||| ||||| ||||||| Sbjct: 236 aggagaaggagtcgtcggtggagg 259
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 22960 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 22901 Query: 300 acacgcgcgtggtgaa 315 |||||||||||||||| Sbjct: 22900 acacgcgcgtggtgaa 22885 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 27 tcgaccccgactacctctactttctccgccac 58 |||||||||||||||||||||| ||||||||| Sbjct: 23194 tcgaccccgactacctctacttcctccgccac 23163 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Minus Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 23062 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 23003 Query: 213 aagagagggactcgtccgtggagg 236 | |||| ||| ||||| ||||||| Sbjct: 23002 aggagaaggagtcgtcggtggagg 22979
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 26955260 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 26955201 Query: 300 acacgcgcgtggtgaa 315 |||||||||||||||| Sbjct: 26955200 acacgcgcgtggtgaa 26955185 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 27 tcgaccccgactacctctactttctccgccac 58 |||||||||||||||||||||| ||||||||| Sbjct: 26955494 tcgaccccgactacctctacttcctccgccac 26955463 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Minus Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 26955362 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 26955303 Query: 213 aagagagggactcgtccgtggagg 236 | |||| ||| ||||| ||||||| Sbjct: 26955302 aggagaaggagtcgtcggtggagg 26955279 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcggcgactgctccgccg 20 |||||||||||||||||||| Sbjct: 20578680 cggcggcgactgctccgccg 20578699
>dbj|AK100828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123A18, full insert sequence Length = 917 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399 Query: 300 acacgcgcgtggtgaa 315 |||||||||||||||| Sbjct: 400 acacgcgcgtggtgaa 415 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297 Query: 213 aagagagggactcgtccgtggagg 236 | |||| ||| ||||| ||||||| Sbjct: 298 aggagaaggagtcgtcggtggagg 321 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 27 tcgaccccgactacctctactttctccgccac 58 |||||||||||||||||||||| ||| ||||| Sbjct: 106 tcgaccccgactacctctacttcctcagccac 137
>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full insert sequence Length = 1351 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299 ||||||| |||||||||||| |||||||||| |||||||| |||||||| ||||| | | Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399 Query: 300 acacgcgcgtggtgaa 315 |||||||||||||||| Sbjct: 400 acacgcgcgtggtgaa 415 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 27 tcgaccccgactacctctactttctccgccac 58 |||||||||||||||||||||| ||||||||| Sbjct: 106 tcgaccccgactacctctacttcctccgccac 137 Score = 48.1 bits (24), Expect = 0.024 Identities = 69/84 (82%) Strand = Plus / Plus Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212 |||||||||| || ||||| || || ||||| ||| |||| ||||||||||||| ||| Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297 Query: 213 aagagagggactcgtccgtggagg 236 | |||| ||| ||||| ||||||| Sbjct: 298 aggagaaggagtcgtcggtggagg 321
>gb|AC166931.3| Mus musculus chromosome 8, clone wi1-2751F18, complete sequence Length = 44136 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 21579 atcgactccatcatcgacatggacg 21555
>ref|NM_023217.2| Mus musculus pyroglutamyl-peptidase I (Pgpep1), mRNA Length = 2151 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence Length = 197906 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 3471 atcgactccatcatcgacatggacg 3447
>gb|BC051938.1| Mus musculus pyroglutamyl-peptidase I, mRNA (cDNA clone MGC:62180 IMAGE:5717365), complete cds Length = 2161 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 370 atcgactccatcatcgacatggacg 394
>gb|BC043041.1| Mus musculus RIKEN cDNA 2810003H13 gene, mRNA (cDNA clone IMAGE:5701330), partial cds Length = 2170 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 351 atcgactccatcatcgacatggacg 375
>gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complete sequence Length = 195782 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 93 tcccgcccggcggtgcctcccctgtcccc 121 ||||||||||| |||||||| |||||||| Sbjct: 69182 tcccgcccggctgtgcctcctctgtcccc 69154
>dbj|AK003373.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110003L05 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I) homolog [Mus musculus], full insert sequence Length = 941 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>dbj|AK049632.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530009O03 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I) homolog [Mus musculus], full insert sequence Length = 2099 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 364 atcgactccatcatcgacatggacg 388
>dbj|AK012658.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810003H13 product:PROBABLE PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3) (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I) (PGP-I), full insert sequence Length = 1366 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 373 atcgactccatcatcgacatggacg 397
>dbj|AK047835.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130003F01 product:hypothetical Pyrrolidone-carboxylate/pyroglutamyl peptidase I (C15) family containing protein, full insert sequence Length = 2151 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 385 atcgactccatcatcgacatggacg 409
>emb|AJ278829.1|MMU278829 Mus musculus mRNA for putative pyroglutamyl-peptidase I (PGPEP1 gene) Length = 1384 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 atcgactccatcgtcgacatggacg 275 |||||||||||| |||||||||||| Sbjct: 373 atcgactccatcatcgacatggacg 397
>ref|XM_472429.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2634 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcggcgactgctccgccg 20 |||||||||||||||||||| Sbjct: 1395 cggcggcgactgctccgccg 1414
>ref|XM_547526.1| PREDICTED: Canis familiaris similar to Insulin receptor-related protein precursor (IRR) (IR-related receptor) (LOC490405), mRNA Length = 3903 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ccgcccggcggtgcctcccc 114 |||||||||||||||||||| Sbjct: 2242 ccgcccggcggtgcctcccc 2223
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcggcgactgctccgccg 20 |||||||||||||||||||| Sbjct: 13014 cggcggcgactgctccgccg 13033
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcggcgactgctccgccg 20 |||||||||||||||||||| Sbjct: 89308 cggcggcgactgctccgccg 89327
>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full insert sequence Length = 3392 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gtggatcgactccatcgtcg 266 |||||||||||||||||||| Sbjct: 1886 gtggatcgactccatcgtcg 1905
>dbj|AK109870.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A10, full insert sequence Length = 2048 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcggcgactgctccgccg 20 |||||||||||||||||||| Sbjct: 591 cggcggcgactgctccgccg 610 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,164,828 Number of Sequences: 3902068 Number of extensions: 2164828 Number of successful extensions: 38268 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38185 Number of HSP's gapped (non-prelim): 83 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)