ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
2emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4,... 88 3e-14
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AK100828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
6gb|AC166931.3| Mus musculus chromosome 8, clone wi1-2751F18, com... 42 1.5
7ref|NM_023217.2| Mus musculus pyroglutamyl-peptidase I (Pgpep1),... 42 1.5
8gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, com... 42 1.5
9gb|BC051938.1| Mus musculus pyroglutamyl-peptidase I, mRNA (cDNA... 42 1.5
10gb|BC043041.1| Mus musculus RIKEN cDNA 2810003H13 gene, mRNA (cD... 42 1.5
11gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complet... 42 1.5
12dbj|AK003373.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 42 1.5
13dbj|AK049632.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 42 1.5
14dbj|AK012658.1| Mus musculus 10, 11 days embryo whole body cDNA,... 42 1.5
15dbj|AK047835.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.5
16emb|AJ278829.1|MMU278829 Mus musculus mRNA for putative pyroglut... 42 1.5
17ref|XM_472429.1| Oryza sativa (japonica cultivar-group), predic... 40 5.9
18ref|XM_547526.1| PREDICTED: Canis familiaris similar to Insulin ... 40 5.9
19emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
20emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 40 5.9
21dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
22dbj|AK109870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9

>ref|XM_473348.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 996

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299
           ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||  | |
Sbjct: 278 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 337

                           
Query: 300 acacgcgcgtggtgaa 315
           ||||||||||||||||
Sbjct: 338 acacgcgcgtggtgaa 353



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 27 tcgaccccgactacctctactttctccgccac 58
          |||||||||||||||||||||| |||||||||
Sbjct: 44 tcgaccccgactacctctacttcctccgccac 75



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212
           |||||||||| || ||||| || || ||||| ||| |||| |||||||||||||   |||
Sbjct: 176 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 235

                                   
Query: 213 aagagagggactcgtccgtggagg 236
           | |||| ||| ||||| |||||||
Sbjct: 236 aggagaaggagtcgtcggtggagg 259



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>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07,
             complete sequence
          Length = 143585

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                         
Query: 240   ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299
             ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||  | |
Sbjct: 22960 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 22901

                             
Query: 300   acacgcgcgtggtgaa 315
             ||||||||||||||||
Sbjct: 22900 acacgcgcgtggtgaa 22885



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 27    tcgaccccgactacctctactttctccgccac 58
             |||||||||||||||||||||| |||||||||
Sbjct: 23194 tcgaccccgactacctctacttcctccgccac 23163



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                         
Query: 153   ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212
             |||||||||| || ||||| || || ||||| ||| |||| |||||||||||||   |||
Sbjct: 23062 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 23003

                                     
Query: 213   aagagagggactcgtccgtggagg 236
             | |||| ||| ||||| |||||||
Sbjct: 23002 aggagaaggagtcgtcggtggagg 22979



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Minus

                                                                            
Query: 240      ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299
                ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||  | |
Sbjct: 26955260 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 26955201

                                
Query: 300      acacgcgcgtggtgaa 315
                ||||||||||||||||
Sbjct: 26955200 acacgcgcgtggtgaa 26955185



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 27       tcgaccccgactacctctactttctccgccac 58
                |||||||||||||||||||||| |||||||||
Sbjct: 26955494 tcgaccccgactacctctacttcctccgccac 26955463



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                            
Query: 153      ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212
                |||||||||| || ||||| || || ||||| ||| |||| |||||||||||||   |||
Sbjct: 26955362 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 26955303

                                        
Query: 213      aagagagggactcgtccgtggagg 236
                | |||| ||| ||||| |||||||
Sbjct: 26955302 aggagaaggagtcgtcggtggagg 26955279



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        cggcggcgactgctccgccg 20
                ||||||||||||||||||||
Sbjct: 20578680 cggcggcgactgctccgccg 20578699



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>dbj|AK100828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123A18, full
           insert sequence
          Length = 917

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299
           ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||  | |
Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399

                           
Query: 300 acacgcgcgtggtgaa 315
           ||||||||||||||||
Sbjct: 400 acacgcgcgtggtgaa 415



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212
           |||||||||| || ||||| || || ||||| ||| |||| |||||||||||||   |||
Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297

                                   
Query: 213 aagagagggactcgtccgtggagg 236
           | |||| ||| ||||| |||||||
Sbjct: 298 aggagaaggagtcgtcggtggagg 321



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 27  tcgaccccgactacctctactttctccgccac 58
           |||||||||||||||||||||| ||| |||||
Sbjct: 106 tcgaccccgactacctctacttcctcagccac 137



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>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full
           insert sequence
          Length = 1351

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                       
Query: 240 ccccctcgtggatcgactccatcgtcgacatggacgaggattaccgccttttcctgcacc 299
           ||||||| |||||||||||| |||||||||| |||||||| |||||||| |||||  | |
Sbjct: 340 ccccctcctggatcgactccctcgtcgacatcgacgaggactaccgcctcttcctcaagc 399

                           
Query: 300 acacgcgcgtggtgaa 315
           ||||||||||||||||
Sbjct: 400 acacgcgcgtggtgaa 415



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 27  tcgaccccgactacctctactttctccgccac 58
           |||||||||||||||||||||| |||||||||
Sbjct: 106 tcgaccccgactacctctacttcctccgccac 137



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 69/84 (82%)
 Strand = Plus / Plus

                                                                       
Query: 153 ccgacggcgaatgtgtctcggacccttccccgggcggcgcaagcaccaaccgccgagcgg 212
           |||||||||| || ||||| || || ||||| ||| |||| |||||||||||||   |||
Sbjct: 238 ccgacggcgagtgcgtctccgatccctcccctggccgcgccagcaccaaccgcccgccgg 297

                                   
Query: 213 aagagagggactcgtccgtggagg 236
           | |||| ||| ||||| |||||||
Sbjct: 298 aggagaaggagtcgtcggtggagg 321



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>gb|AC166931.3| Mus musculus chromosome 8, clone wi1-2751F18, complete sequence
          Length = 44136

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 251   atcgactccatcgtcgacatggacg 275
             |||||||||||| ||||||||||||
Sbjct: 21579 atcgactccatcatcgacatggacg 21555



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>ref|NM_023217.2| Mus musculus pyroglutamyl-peptidase I (Pgpep1), mRNA
          Length = 2151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 385 atcgactccatcatcgacatggacg 409



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>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence
          Length = 197906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 251  atcgactccatcgtcgacatggacg 275
            |||||||||||| ||||||||||||
Sbjct: 3471 atcgactccatcatcgacatggacg 3447



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>gb|BC051938.1| Mus musculus pyroglutamyl-peptidase I, mRNA (cDNA clone MGC:62180
           IMAGE:5717365), complete cds
          Length = 2161

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 370 atcgactccatcatcgacatggacg 394



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>gb|BC043041.1| Mus musculus RIKEN cDNA 2810003H13 gene, mRNA (cDNA clone
           IMAGE:5701330), partial cds
          Length = 2170

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 351 atcgactccatcatcgacatggacg 375



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>gb|AC074389.8| Homo sapiens BAC clone RP11-510K8 from 7, complete sequence
          Length = 195782

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 93    tcccgcccggcggtgcctcccctgtcccc 121
             ||||||||||| |||||||| ||||||||
Sbjct: 69182 tcccgcccggctgtgcctcctctgtcccc 69154



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>dbj|AK003373.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1110003L05 product:PROBABLE
           PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3)
           (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I)
           (PGP-I) homolog [Mus musculus], full insert sequence
          Length = 941

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 385 atcgactccatcatcgacatggacg 409



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>dbj|AK049632.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530009O03 product:PROBABLE
           PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3)
           (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I)
           (PGP-I) homolog [Mus musculus], full insert sequence
          Length = 2099

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 364 atcgactccatcatcgacatggacg 388



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>dbj|AK012658.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810003H13 product:PROBABLE
           PYRROLIDONE-CARBOXYLATE PEPTIDASE (EC 3.4.19.3)
           (5-OXOPROLYL-PEPTIDASE) (PYROGLUTAMYL-PEPTIDASE I)
           (PGP-I), full insert sequence
          Length = 1366

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 373 atcgactccatcatcgacatggacg 397



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>dbj|AK047835.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130003F01 product:hypothetical
           Pyrrolidone-carboxylate/pyroglutamyl peptidase I (C15)
           family containing protein, full insert sequence
          Length = 2151

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 385 atcgactccatcatcgacatggacg 409



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>emb|AJ278829.1|MMU278829 Mus musculus mRNA for putative pyroglutamyl-peptidase I (PGPEP1
           gene)
          Length = 1384

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 251 atcgactccatcgtcgacatggacg 275
           |||||||||||| ||||||||||||
Sbjct: 373 atcgactccatcatcgacatggacg 397



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>ref|XM_472429.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2634

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    cggcggcgactgctccgccg 20
            ||||||||||||||||||||
Sbjct: 1395 cggcggcgactgctccgccg 1414



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>ref|XM_547526.1| PREDICTED: Canis familiaris similar to Insulin receptor-related
            protein precursor (IRR) (IR-related receptor)
            (LOC490405), mRNA
          Length = 3903

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ccgcccggcggtgcctcccc 114
            ||||||||||||||||||||
Sbjct: 2242 ccgcccggcggtgcctcccc 2223



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>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16,
             complete sequence
          Length = 114051

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cggcggcgactgctccgccg 20
             ||||||||||||||||||||
Sbjct: 13014 cggcggcgactgctccgccg 13033



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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     cggcggcgactgctccgccg 20
             ||||||||||||||||||||
Sbjct: 89308 cggcggcgactgctccgccg 89327



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>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
            insert sequence
          Length = 3392

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  gtggatcgactccatcgtcg 266
            ||||||||||||||||||||
Sbjct: 1886 gtggatcgactccatcgtcg 1905



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>dbj|AK109870.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A10, full
           insert sequence
          Length = 2048

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   cggcggcgactgctccgccg 20
           ||||||||||||||||||||
Sbjct: 591 cggcggcgactgctccgccg 610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,164,828
Number of Sequences: 3902068
Number of extensions: 2164828
Number of successful extensions: 38268
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38185
Number of HSP's gapped (non-prelim): 83
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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