ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete seq... 40 1.6
2emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on ch... 40 1.6
3gb|AY050668.1| Homo sapiens PKC-potentiated PP1 inhibitory prote... 38 6.2
4gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosom... 38 6.2
5gb|AC073048.7| Homo sapiens BAC clone RP11-54E21 from 7, complet... 38 6.2
6ref|NM_166568.1| Drosophila melanogaster CG3499-RB (CG3499), mRNA 38 6.2
7gb|AY051480.1| Drosophila melanogaster GH14313 full length cDNA 38 6.2
8gb|AC008351.4|AC008351 Drosophila melanogaster, chromosome 2R, r... 38 6.2
9gb|AC011479.7| Homo sapiens chromosome 19 clone CTB-102L5, compl... 38 6.2
10gb|AC005650.1|AC005650 Drosophila melanogaster, chromosome 2R, r... 38 6.2
11gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66... 38 6.2
12emb|AL023516.3|GGBLOCUS Gallus gallus (chicken) DNA sequence fro... 38 6.2
13gb|DQ084250.1| Uncultured bacterium BAC10-10, complete sequence ... 38 6.2
14emb|AL954802.1| Chicken DNA sequence from clone XX-CBF23 on chro... 38 6.2

>gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete sequence
          Length = 143406

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gcaggtggcctttccgctgg 130
              ||||||||||||||||||||
Sbjct: 114388 gcaggtggcctttccgctgg 114369



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>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete
             sequence
          Length = 157168

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   gcaggtggcctttccgctgg 130
             ||||||||||||||||||||
Sbjct: 22651 gcaggtggcctttccgctgg 22670



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>gb|AY050668.1| Homo sapiens PKC-potentiated PP1 inhibitory protein (PPP1R14A) gene,
              complete cds
          Length = 169660

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 39     gccgggatctacagcctgacccc 61
              ||||||||| |||||||||||||
Sbjct: 105504 gccgggatccacagcctgacccc 105482



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>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence
          Length = 175070

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    ggatctacagcctgacccc 61
             |||||||||||||||||||
Sbjct: 53795 ggatctacagcctgacccc 53813



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>gb|AC073048.7| Homo sapiens BAC clone RP11-54E21 from 7, complete sequence
          Length = 166183

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    acatcctccgtggatggcg 88
             |||||||||||||||||||
Sbjct: 49647 acatcctccgtggatggcg 49629



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>ref|NM_166568.1| Drosophila melanogaster CG3499-RB (CG3499), mRNA
          Length = 2785

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    ggctgctggccaaatccga 19
            |||||||||||||||||||
Sbjct: 1025 ggctgctggccaaatccga 1043



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>gb|AY051480.1| Drosophila melanogaster GH14313 full length cDNA
          Length = 2493

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   ggctgctggccaaatccga 19
           |||||||||||||||||||
Sbjct: 713 ggctgctggccaaatccga 731



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>gb|AC008351.4|AC008351 Drosophila melanogaster, chromosome 2R, region 59A-59C, BAC clone
              BACR09K23, complete sequence
          Length = 191438

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ggctgctggccaaatccga 19
              |||||||||||||||||||
Sbjct: 128165 ggctgctggccaaatccga 128147



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>gb|AC011479.7| Homo sapiens chromosome 19 clone CTB-102L5, complete sequence
          Length = 169661

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 39     gccgggatctacagcctgacccc 61
              ||||||||| |||||||||||||
Sbjct: 105505 gccgggatccacagcctgacccc 105483



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>gb|AC005650.1|AC005650 Drosophila melanogaster, chromosome 2R, region 59B4-59B7, P1 clone
             DS02885, complete sequence
          Length = 60019

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     ggctgctggccaaatccga 19
             |||||||||||||||||||
Sbjct: 54961 ggctgctggccaaatccga 54979



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>gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66 of 73 of the complete
              sequence
          Length = 302225

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      ggctgctggccaaatccga 19
              |||||||||||||||||||
Sbjct: 291359 ggctgctggccaaatccga 291341



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>emb|AL023516.3|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids  cB12,
             c4.5 and cBF23. Contains two Butyrophilin like genes, a
             gene coding for two isoforms of a B locus G (Zipper
             protein) like protein,  genes coding for B locus Lectin
             like Natural Killer cell surface protein, C type Lectin,
             TAP Binding Protein (Tapasin) like protein, L Beta chain 1
             and 2, M Alpha chain 1, B Beta chain 1 and 2, F Alpha
             chain 1 and 2, Transport Associated Proteins TAP1 and 2
             and complement C4, a Histone H3 like gene, a Leu-tRNA gene
             and the RING3 kinase gene
          Length = 92863

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    cagcctgaccccgctgtcc 68
             |||||||||||||||||||
Sbjct: 64279 cagcctgaccccgctgtcc 64261



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>gb|DQ084250.1| Uncultured bacterium BAC10-10, complete sequence of BAC
          Length = 33764

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   gcgaggctaggcaggtggc 119
             |||||||||||||||||||
Sbjct: 31181 gcgaggctaggcaggtggc 31163



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>emb|AL954802.1| Chicken DNA sequence from clone XX-CBF23 on chromosome 16, complete
            sequence
          Length = 32612

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 50   cagcctgaccccgctgtcc 68
            |||||||||||||||||||
Sbjct: 4029 cagcctgaccccgctgtcc 4011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 611,459
Number of Sequences: 3902068
Number of extensions: 611459
Number of successful extensions: 37219
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37197
Number of HSP's gapped (non-prelim): 22
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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