Clone Name | bart48e12 |
---|---|
Clone Library Name | barley_pub |
>gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete sequence Length = 143406 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcaggtggcctttccgctgg 130 |||||||||||||||||||| Sbjct: 114388 gcaggtggcctttccgctgg 114369
>emb|AL772232.18| Mouse DNA sequence from clone RP23-119F15 on chromosome 4, complete sequence Length = 157168 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gcaggtggcctttccgctgg 130 |||||||||||||||||||| Sbjct: 22651 gcaggtggcctttccgctgg 22670
>gb|AY050668.1| Homo sapiens PKC-potentiated PP1 inhibitory protein (PPP1R14A) gene, complete cds Length = 169660 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 gccgggatctacagcctgacccc 61 ||||||||| ||||||||||||| Sbjct: 105504 gccgggatccacagcctgacccc 105482
>gb|AC132118.3| Mus musculus BAC clone RP23-467C14 from chromosome 5, complete sequence Length = 175070 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 ggatctacagcctgacccc 61 ||||||||||||||||||| Sbjct: 53795 ggatctacagcctgacccc 53813
>gb|AC073048.7| Homo sapiens BAC clone RP11-54E21 from 7, complete sequence Length = 166183 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 acatcctccgtggatggcg 88 ||||||||||||||||||| Sbjct: 49647 acatcctccgtggatggcg 49629
>ref|NM_166568.1| Drosophila melanogaster CG3499-RB (CG3499), mRNA Length = 2785 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 ggctgctggccaaatccga 19 ||||||||||||||||||| Sbjct: 1025 ggctgctggccaaatccga 1043
>gb|AY051480.1| Drosophila melanogaster GH14313 full length cDNA Length = 2493 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 ggctgctggccaaatccga 19 ||||||||||||||||||| Sbjct: 713 ggctgctggccaaatccga 731
>gb|AC008351.4|AC008351 Drosophila melanogaster, chromosome 2R, region 59A-59C, BAC clone BACR09K23, complete sequence Length = 191438 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggctgctggccaaatccga 19 ||||||||||||||||||| Sbjct: 128165 ggctgctggccaaatccga 128147
>gb|AC011479.7| Homo sapiens chromosome 19 clone CTB-102L5, complete sequence Length = 169661 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 gccgggatctacagcctgacccc 61 ||||||||| ||||||||||||| Sbjct: 105505 gccgggatccacagcctgacccc 105483
>gb|AC005650.1|AC005650 Drosophila melanogaster, chromosome 2R, region 59B4-59B7, P1 clone DS02885, complete sequence Length = 60019 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 ggctgctggccaaatccga 19 ||||||||||||||||||| Sbjct: 54961 ggctgctggccaaatccga 54979
>gb|AE003458.3| Drosophila melanogaster chromosome 2R, section 66 of 73 of the complete sequence Length = 302225 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggctgctggccaaatccga 19 ||||||||||||||||||| Sbjct: 291359 ggctgctggccaaatccga 291341
>emb|AL023516.3|GGBLOCUS Gallus gallus (chicken) DNA sequence from a contig of cosmids cB12, c4.5 and cBF23. Contains two Butyrophilin like genes, a gene coding for two isoforms of a B locus G (Zipper protein) like protein, genes coding for B locus Lectin like Natural Killer cell surface protein, C type Lectin, TAP Binding Protein (Tapasin) like protein, L Beta chain 1 and 2, M Alpha chain 1, B Beta chain 1 and 2, F Alpha chain 1 and 2, Transport Associated Proteins TAP1 and 2 and complement C4, a Histone H3 like gene, a Leu-tRNA gene and the RING3 kinase gene Length = 92863 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 cagcctgaccccgctgtcc 68 ||||||||||||||||||| Sbjct: 64279 cagcctgaccccgctgtcc 64261
>gb|DQ084250.1| Uncultured bacterium BAC10-10, complete sequence of BAC Length = 33764 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 gcgaggctaggcaggtggc 119 ||||||||||||||||||| Sbjct: 31181 gcgaggctaggcaggtggc 31163
>emb|AL954802.1| Chicken DNA sequence from clone XX-CBF23 on chromosome 16, complete sequence Length = 32612 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 cagcctgaccccgctgtcc 68 ||||||||||||||||||| Sbjct: 4029 cagcctgaccccgctgtcc 4011 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 611,459 Number of Sequences: 3902068 Number of extensions: 611459 Number of successful extensions: 37219 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37197 Number of HSP's gapped (non-prelim): 22 length of query: 131 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 110 effective length of database: 17,151,101,840 effective search space: 1886621202400 effective search space used: 1886621202400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)