Clone Name | bart48e11 |
---|---|
Clone Library Name | barley_pub |
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 gtcaccatttgcttcaacggc 64 ||||||||||||||||||||| Sbjct: 603014 gtcaccatttgcttcaacggc 603034
>gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 of the complete genome Length = 12326 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 gctggctgaggctacccttg 82 |||||||||||||||||||| Sbjct: 4199 gctggctgaggctacccttg 4218
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cctcgccgggcccgcggcgt 35 |||||||||||||||||||| Sbjct: 1436170 cctcgccgggcccgcggcgt 1436151
>gb|AF050676.1|AF050676 Pseudomonas aeruginosa lipoprotein (oprX) and ferric uptake regulator (fur) genes, complete cds; and unknown genes Length = 2292 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 gctggctgaggctacccttg 82 |||||||||||||||||||| Sbjct: 499 gctggctgaggctacccttg 480
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 28 cgcggcgtgcgagggtgtc 46 ||||||||||||||||||| Sbjct: 3304430 cgcggcgtgcgagggtgtc 3304448
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 13 gttcctcgccgggcccgcg 31 ||||||||||||||||||| Sbjct: 3066543 gttcctcgccgggcccgcg 3066561
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 6.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 12 cgttcctcgccgggcccgcggcgtgcg 38 ||||| ||||| ||||||||||||||| Sbjct: 120558 cgttcttcgcctggcccgcggcgtgcg 120584
>ref|XM_364860.1| Magnaporthe grisea 70-15 hypothetical protein (MG09705.4) partial mRNA Length = 966 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 tcctcgccgggcccgcggc 33 ||||||||||||||||||| Sbjct: 302 tcctcgccgggcccgcggc 284
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 6.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 12 cgttcctcgccgggcccgcggcgtgcg 38 ||||| ||||| ||||||||||||||| Sbjct: 580725 cgttcttcgcctggcccgcggcgtgcg 580699
>gb|AY358303.1| Homo sapiens clone DNA52192 FGFRL1 (UNQ480) mRNA, complete cds Length = 3402 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gccgggcccgcggcgtgcg 38 ||||||||||||||||||| Sbjct: 95 gccgggcccgcggcgtgcg 77
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 tggtggcgttcctcgccgg 24 ||||||||||||||||||| Sbjct: 1582454 tggtggcgttcctcgccgg 1582436
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 6.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 12 cgttcctcgccgggcccgcggcgtgcg 38 ||||| ||||| ||||||||||||||| Sbjct: 389315 cgttcttcgcctggcccgcggcgtgcg 389289
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 acccttgctgaacacgctg 94 ||||||||||||||||||| Sbjct: 2559466 acccttgctgaacacgctg 2559484
>ref|NM_001004356.2| Homo sapiens fibroblast growth factor receptor-like 1 (FGFRL1), transcript variant 1, mRNA Length = 3215 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gccgggcccgcggcgtgcg 38 ||||||||||||||||||| Sbjct: 95 gccgggcccgcggcgtgcg 77
>gb|AF312678.1|AF312678 Homo sapiens FGF homologous factor receptor (FHFR) mRNA, complete cds Length = 3397 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gccgggcccgcggcgtgcg 38 ||||||||||||||||||| Sbjct: 95 gccgggcccgcggcgtgcg 77
>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide mycinamicin, partial and comeplete cds Length = 58343 Score = 38.2 bits (19), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 tggcgttcctcgccgggcccgcg 31 |||||||||||||||||| |||| Sbjct: 58304 tggcgttcctcgccgggcgcgcg 58326
>gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, complete sequence Length = 177950 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 gccgggcccgcggcgtgcg 38 ||||||||||||||||||| Sbjct: 88919 gccgggcccgcggcgtgcg 88901
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 tcgccgggcccgcggcgtg 36 ||||||||||||||||||| Sbjct: 2595801 tcgccgggcccgcggcgtg 2595783
>ref|XM_319753.2| Anopheles gambiae str. PEST ENSANGP00000017181 (ENSANGG00000014692), partial mRNA Length = 6315 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 cttgctgaacacgctgctc 97 ||||||||||||||||||| Sbjct: 2514 cttgctgaacacgctgctc 2532
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 6.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 12 cgttcctcgccgggcccgcggcgtgcg 38 ||||| ||||| ||||||||||||||| Sbjct: 370190 cgttcttcgcctggcccgcggcgtgcg 370164
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 38.2 bits (19), Expect = 6.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 ggtggcgttcctcgccggg 25 ||||||||||||||||||| Sbjct: 1758205 ggtggcgttcctcgccggg 1758223 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 730,116 Number of Sequences: 3902068 Number of extensions: 730116 Number of successful extensions: 47652 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46748 Number of HSP's gapped (non-prelim): 904 length of query: 132 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 111 effective length of database: 17,151,101,840 effective search space: 1903772304240 effective search space used: 1903772304240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)