ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart48e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 42 0.40
2gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 o... 40 1.6
3dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 1.6
4gb|AF050676.1|AF050676 Pseudomonas aeruginosa lipoprotein (oprX)... 40 1.6
5gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 38 6.2
6gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 38 6.2
7gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 38 6.2
8ref|XM_364860.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 6.2
9gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 38 6.2
10gb|AY358303.1| Homo sapiens clone DNA52192 FGFRL1 (UNQ480) mRNA,... 38 6.2
11gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 6.2
12emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 38 6.2
13dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 38 6.2
14ref|NM_001004356.2| Homo sapiens fibroblast growth factor recept... 38 6.2
15gb|AF312678.1|AF312678 Homo sapiens FGF homologous factor recept... 38 6.2
16dbj|AB089954.1| Micromonospora griseorubida gene cluster for the... 38 6.2
17gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, comple... 38 6.2
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.2
19ref|XM_319753.2| Anopheles gambiae str. PEST ENSANGP00000017181 ... 38 6.2
20gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 6.2
21gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 38 6.2

>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 42.1 bits (21), Expect = 0.40
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 44     gtcaccatttgcttcaacggc 64
              |||||||||||||||||||||
Sbjct: 603014 gtcaccatttgcttcaacggc 603034



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>gb|AE004890.1| Pseudomonas aeruginosa PAO1, section 451 of 529 of the complete
            genome
          Length = 12326

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   gctggctgaggctacccttg 82
            ||||||||||||||||||||
Sbjct: 4199 gctggctgaggctacccttg 4218



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      cctcgccgggcccgcggcgt 35
               ||||||||||||||||||||
Sbjct: 1436170 cctcgccgggcccgcggcgt 1436151



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>gb|AF050676.1|AF050676 Pseudomonas aeruginosa lipoprotein (oprX) and ferric uptake
           regulator (fur) genes, complete cds; and unknown genes
          Length = 2292

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  gctggctgaggctacccttg 82
           ||||||||||||||||||||
Sbjct: 499 gctggctgaggctacccttg 480



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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 28      cgcggcgtgcgagggtgtc 46
               |||||||||||||||||||
Sbjct: 3304430 cgcggcgtgcgagggtgtc 3304448



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 13      gttcctcgccgggcccgcg 31
               |||||||||||||||||||
Sbjct: 3066543 gttcctcgccgggcccgcg 3066561



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 12     cgttcctcgccgggcccgcggcgtgcg 38
              ||||| ||||| |||||||||||||||
Sbjct: 120558 cgttcttcgcctggcccgcggcgtgcg 120584



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>ref|XM_364860.1| Magnaporthe grisea 70-15 hypothetical protein (MG09705.4) partial
           mRNA
          Length = 966

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  tcctcgccgggcccgcggc 33
           |||||||||||||||||||
Sbjct: 302 tcctcgccgggcccgcggc 284



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 12     cgttcctcgccgggcccgcggcgtgcg 38
              ||||| ||||| |||||||||||||||
Sbjct: 580725 cgttcttcgcctggcccgcggcgtgcg 580699



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>gb|AY358303.1| Homo sapiens clone DNA52192 FGFRL1 (UNQ480) mRNA, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 20 gccgggcccgcggcgtgcg 38
          |||||||||||||||||||
Sbjct: 95 gccgggcccgcggcgtgcg 77



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 6       tggtggcgttcctcgccgg 24
               |||||||||||||||||||
Sbjct: 1582454 tggtggcgttcctcgccgg 1582436



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 12     cgttcctcgccgggcccgcggcgtgcg 38
              ||||| ||||| |||||||||||||||
Sbjct: 389315 cgttcttcgcctggcccgcggcgtgcg 389289



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 76      acccttgctgaacacgctg 94
               |||||||||||||||||||
Sbjct: 2559466 acccttgctgaacacgctg 2559484



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>ref|NM_001004356.2| Homo sapiens fibroblast growth factor receptor-like 1 (FGFRL1),
          transcript variant 1, mRNA
          Length = 3215

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 20 gccgggcccgcggcgtgcg 38
          |||||||||||||||||||
Sbjct: 95 gccgggcccgcggcgtgcg 77



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>gb|AF312678.1|AF312678 Homo sapiens FGF homologous factor receptor (FHFR) mRNA, complete
          cds
          Length = 3397

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 20 gccgggcccgcggcgtgcg 38
          |||||||||||||||||||
Sbjct: 95 gccgggcccgcggcgtgcg 77



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>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide
             mycinamicin, partial and comeplete cds
          Length = 58343

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 9     tggcgttcctcgccgggcccgcg 31
             |||||||||||||||||| ||||
Sbjct: 58304 tggcgttcctcgccgggcgcgcg 58326



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>gb|AC019103.8| Homo sapiens BAC clone RP11-460I19 from 4, complete sequence
          Length = 177950

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    gccgggcccgcggcgtgcg 38
             |||||||||||||||||||
Sbjct: 88919 gccgggcccgcggcgtgcg 88901



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 18      tcgccgggcccgcggcgtg 36
               |||||||||||||||||||
Sbjct: 2595801 tcgccgggcccgcggcgtg 2595783



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>ref|XM_319753.2| Anopheles gambiae str. PEST ENSANGP00000017181 (ENSANGG00000014692),
            partial mRNA
          Length = 6315

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 79   cttgctgaacacgctgctc 97
            |||||||||||||||||||
Sbjct: 2514 cttgctgaacacgctgctc 2532



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 12     cgttcctcgccgggcccgcggcgtgcg 38
              ||||| ||||| |||||||||||||||
Sbjct: 370190 cgttcttcgcctggcccgcggcgtgcg 370164



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 7       ggtggcgttcctcgccggg 25
               |||||||||||||||||||
Sbjct: 1758205 ggtggcgttcctcgccggg 1758223


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 730,116
Number of Sequences: 3902068
Number of extensions: 730116
Number of successful extensions: 47652
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46748
Number of HSP's gapped (non-prelim): 904
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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