ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart48e08 |
|---|---|
| Clone Library Name | barley_pub |
>RETO_PAPSO (P93479) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 535 Score = 112 bits (279), Expect = 1e-24 Identities = 54/127 (42%), Positives = 79/127 (62%) Frame = +3 Query: 183 TPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGG 362 T ++ + LL +S++NP F P+ +P +IV P + + + V C R IR+RSGG Sbjct: 48 TDTNSDYFKLLHASMQNPLFAKPTVSKPSFIVMPGSKEELSSTVHCCTRESWTIRLRSGG 107 Query: 363 HDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIGKASSVLGF 542 H YEGLSY + F ++D+ +L + +D + TAWV+SGA LGELYYAI +++ LGF Sbjct: 108 HSYEGLSYTA--DTPFVIVDMMNLNRISIDVLSETAWVESGATLGELYYAIAQSTDTLGF 165 Query: 543 PGGLCPT 563 G CPT Sbjct: 166 TAGWCPT 172
>RETO_ESCCA (P30986) Reticuline oxidase precursor (EC 1.21.3.3)| (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) Length = 538 Score = 110 bits (276), Expect = 2e-24 Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 2/143 (1%) Frame = +3 Query: 141 LSCLSAS-IPRQLVFTPSSPS-FTPLLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAV 314 LSCL+ + + VF+ S S F L SI+NP F +P I+ P + + + Sbjct: 28 LSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTI 87 Query: 315 LCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQL 494 C R+ IR+RSGGH YEGLSY S F ++DL +L V +D ++ TAWV+SG+ L Sbjct: 88 RCIRKGSWTIRLRSGGHSYEGLSYTS--DTPFILIDLMNLNRVSIDLESETAWVESGSTL 145 Query: 495 GELYYAIGKASSVLGFPGGLCPT 563 GELYYAI ++SS LGF G CPT Sbjct: 146 GELYYAITESSSKLGFTAGWCPT 168
>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)| Length = 447 Score = 40.0 bits (92), Expect = 0.005 Identities = 24/77 (31%), Positives = 37/77 (48%) Frame = +3 Query: 261 RPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRS 440 RP Y+V + V AAV + V + GH SV A+ +++ + Sbjct: 29 RPAYVVEAADEQEVAAAVRLAAEQKRPVGVMATGHG------PSVSADDAVLVNTRRMEG 82 Query: 441 VRVDAQAATAWVDSGAQ 491 V VDA ATAW+++GA+ Sbjct: 83 VSVDAARATAWIEAGAR 99
>HDNO_ARTOX (P08159) 6-hydroxy-D-nicotine oxidase (EC 1.5.3.6) (6-HDNO)| Length = 458 Score = 39.3 bits (90), Expect = 0.009 Identities = 26/81 (32%), Positives = 38/81 (46%) Frame = +3 Query: 261 RPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRS 440 RP I +A V +V +GL I VRSGGH+ G + + VLDL + S Sbjct: 37 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYATN----DGGIVLDLRLMNS 92 Query: 441 VRVDAQAATAWVDSGAQLGEL 503 + +D + A + G G+L Sbjct: 93 IHIDTAGSRARIGGGVISGDL 113
>MPAG4_DACGL (P82946) Major pollen allergen Dac g 4 (Fragments)| Length = 55 Score = 37.0 bits (84), Expect = 0.044 Identities = 16/20 (80%), Positives = 17/20 (85%) Frame = +3 Query: 456 QAATAWVDSGAQLGELYYAI 515 QA TAWVDSGAQLGEL Y + Sbjct: 23 QARTAWVDSGAQLGELSYGV 42
>ESR1_SPAAU (Q9PVZ9) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 579 Score = 34.7 bits (78), Expect = 0.22 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G SD L L + LVF PSSP +P ++ + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPHLSPFMQPANHH---YLETTSTPIYS 99 Query: 276 VTPTNASHVQAAVLCG 323 V P++ V CG Sbjct: 100 V-PSSQHSVSREDQCG 114
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 33.5 bits (75), Expect = 0.49 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>ESR1_ORENI (Q9YH33) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 585 Score = 33.5 bits (75), Expect = 0.49 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +3 Query: 93 CYASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY 272 CY++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 42 CYSAPLDAHGPLSDGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVY 98
>YEK3_SCHPO (O36015) Putative ribosomal RNA methyltransferase C4F10.03c (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) Length = 285 Score = 31.6 bits (70), Expect = 1.8 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 234 PKFFTPSTVRPLYIVTPTNASHVQAAVLCGRRSG 335 P F P +PL ++ PTNA + + CG G Sbjct: 210 PSNFQPDLTKPLCVIDPTNAHEIAPFIACGDLDG 243
>ESR1_PAGMA (O42132) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 581 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLY- 272 Y++ + + G SD L L + LVF PSSP +P + + + +T P+Y Sbjct: 43 YSAPLDAHGPPSDGSLQSLGSGPNSPLVFVPSSPRLSPFMHPPTHH---YLETTSTPVYR 99 Query: 273 IVTPTNASHVQAAVLCG 323 P++ V CG Sbjct: 100 SSVPSSQQSVSREDQCG 116
>ALL5_APIGR (P81943) Allergen Api g 5 (Fragments)| Length = 86 Score = 31.2 bits (69), Expect = 2.4 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +3 Query: 429 SLRSVRVDAQAATAWVDSGAQLGELYYAI 515 +L++V D A TA V +GA LGE+YY I Sbjct: 24 NLKAVIADPVAKTAVVQAGATLGEVYYXI 52
>MIAA_MYCTU (P65352) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 314 Score = 30.4 bits (67), Expect = 4.1 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 14/101 (13%) Frame = +3 Query: 258 VRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHD----YEGLSY----------RSV 395 +RPL I+ PT A Q A+ R G R+ V D Y G+ R + Sbjct: 1 MRPLAIIGPTGAGKSQLALDVAARLGARVSVEIVNADAMQLYRGMDIGTAKLPVSERRGI 60 Query: 396 RAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIG 518 VLD++ +V +AA A +++ A G + +G Sbjct: 61 PHHQLDVLDVTETATVARYQRAAAADIEAIAARGAVPVVVG 101
>MIAA_MYCBO (P65353) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 314 Score = 30.4 bits (67), Expect = 4.1 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 14/101 (13%) Frame = +3 Query: 258 VRPLYIVTPTNASHVQAAVLCGRRSGLRIRVRSGGHD----YEGLSY----------RSV 395 +RPL I+ PT A Q A+ R G R+ V D Y G+ R + Sbjct: 1 MRPLAIIGPTGAGKSQLALDVAARLGARVSVEIVNADAMQLYRGMDIGTAKLPVSERRGI 60 Query: 396 RAEAFAVLDLSSLRSVRVDAQAATAWVDSGAQLGELYYAIG 518 VLD++ +V +AA A +++ A G + +G Sbjct: 61 PHHQLDVLDVTETATVARYQRAAAADIEAIAARGAVPVVVG 101
>ESR1_ORYLA (P50241) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 620 Score = 30.4 bits (67), Expect = 4.1 Identities = 21/78 (26%), Positives = 34/78 (43%) Frame = +3 Query: 96 YASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYI 275 Y++ + + G S+ L L + LVF PSSP +P + + + +T P+Y Sbjct: 88 YSAPLETNGPPSEGSLQSLGSGPTSPLVFVPSSPRLSPFMHPPSHH---YLETTSTPVYR 144 Query: 276 VTPTNASHVQAAVLCGRR 329 + AS CG R Sbjct: 145 SSHQGASREDQ---CGSR 159
>VIT2_FUNHE (Q98893) Vitellogenin-2 precursor (Vitellogenin II) (VTG II)| [Contains: Lipovitellin-1 (LV1); Phosvitin (PV); Lipovitellin-2 (LV2)] Length = 1687 Score = 30.4 bits (67), Expect = 4.1 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 11/101 (10%) Frame = +3 Query: 153 SASIPRQLVFTPSSPS-FTP--LLKSSIRNPKFFTPSTVRPLYIVTPTNASHVQAAVL-- 317 +AS+ Q +P P F P LLKS I TPS Y V N+ +QA+VL Sbjct: 812 AASVEVQATISPPLPEDFHPAHLLKSDISMKASVTPSVSLHTYGVMGVNSPFIQASVLSR 871 Query: 318 ------CGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLD 422 ++ R+ + G Y+ L V+ A A L+ Sbjct: 872 AKDHAALPKKMEARLDIVKGYFSYQFLPVEGVKTIASARLE 912
>GGLO_BOVIN (Q3ZC33) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/91 (21%), Positives = 39/91 (42%) Frame = +3 Query: 282 PTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQA 461 PT+ V+ + R+ R++V GGH ++ + F + R ++VD + Sbjct: 26 PTSVEEVREVLALARQQNKRVKVVGGGHSPSDIAC----TDGFMIHMGKMNRVLKVDTEK 81 Query: 462 ATAWVDSGAQLGELYYAIGKASSVLGFPGGL 554 V++G L +L+ + K L G + Sbjct: 82 KQVTVEAGILLADLHPQLDKHGLALSNLGAV 112
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.0 bits (66), Expect = 5.4 Identities = 35/145 (24%), Positives = 55/145 (37%) Frame = +3 Query: 99 ASSVASQGNSSDAFLSCLSASIPRQLVFTPSSPSFTPLLKSSIRNPKFFTPSTVRPLYIV 278 AS +S SS A S L++S SS + + L SSI + + ST Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161 Query: 279 TPTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQ 458 + TN++ S L S L+ S+ + A SSL S + Sbjct: 162 SSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAA-SN 220 Query: 459 AATAWVDSGAQLGELYYAIGKASSV 533 +AT+ + + L A +SS+ Sbjct: 221 SATSSSLASSSLNSTTSATATSSSI 245
>GGLO_PIG (Q8HXW0) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 29.6 bits (65), Expect = 7.0 Identities = 19/91 (20%), Positives = 39/91 (42%) Frame = +3 Query: 282 PTNASHVQAAVLCGRRSGLRIRVRSGGHDYEGLSYRSVRAEAFAVLDLSSLRSVRVDAQA 461 PT+ ++ + R+ R++V GGH ++ + F + R ++VD + Sbjct: 26 PTSVEEIREVLALARQQNKRVKVVGGGHSPSDIAC----TDGFMIHMGKMNRVLKVDMEK 81 Query: 462 ATAWVDSGAQLGELYYAIGKASSVLGFPGGL 554 V++G L +L+ + K L G + Sbjct: 82 KQVTVEAGILLADLHPQLDKHGLALSNLGAV 112
>PMPI_CHLTR (O84882) Probable outer membrane protein pmpI precursor| (Polymorphic membrane protein I) Length = 878 Score = 29.3 bits (64), Expect = 9.2 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Frame = +3 Query: 132 DAFLSCLSASIPRQLVFTP----SSPSFTPL---LKSSIRNPKFFTPSTVRPLYIVTPTN 290 DA LS L A L F P SS +PL L++S+ +P TP+T PL I T N Sbjct: 336 DAILSSLEARNGDILFFDPIVQESSSKESPLPSSLQASVTSP---TPATASPLVIQTSAN 392 Query: 291 AS 296 S Sbjct: 393 RS 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,048,679 Number of Sequences: 219361 Number of extensions: 836656 Number of successful extensions: 3226 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2923 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3136 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
